mRNA_Ecto-sp13_S_contig12322.1944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12322.1944.1
Unique NamemRNA_Ecto-sp13_S_contig12322.1944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12322.1944.1 vs. uniprot
Match: D8LSP7_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSP7_ECTSI)

HSP 1 Score: 447 bits (1149), Expect = 2.030e-149
Identity = 229/240 (95.42%), Postives = 233/240 (97.08%), Query Frame = 1 
Query:    1 QIRAGVLDCTAHPAQCEGSAKQKAPFLKVYPHGKGVDGDKRGFPSVLPATKLKEAVAEAGASLPEVVTVIPAGVGTQRIQDVVQSFLGANIFSGESPMCLFVLSKKEEPTAVVKTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMMLMFSQQEGMNVAALNPDQPQPGEGEQAMVTAHYSPAHWGPVTHDHVSEFIMSHLSSLDTSAFLQHAREMSATARLNRERLPVQLERFLNE 720
            +IRAGVLDCTAHPAQCEGSAKQK PFLKVYPHGKGVDGDKRGFPSVLPAT +KEAVAEA ASLPEVVTVIPAGVGTQRIQDVVQSFLGANIFSGESPMCLFVLSKKEEPTAV+KTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMMLMF QQEGMNVAALNPDQPQP EGEQAMVTAHYSPA WGPVTHDHVSEFIMSHLSSLDTSAFL HAREMSATA+LNRERLPVQLERFLNE
Sbjct:  379 EIRAGVLDCTAHPAQCEGSAKQKMPFLKVYPHGKGVDGDKRGFPSVLPATGVKEAVAEAEASLPEVVTVIPAGVGTQRIQDVVQSFLGANIFSGESPMCLFVLSKKEEPTAVIKTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMMLMFPQQEGMNVAALNPDQPQPREGEQAMVTAHYSPAQWGPVTHDHVSEFIMSHLSSLDTSAFLLHAREMSATAKLNRERLPVQLERFLNE 618
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BLAST of mRNA_Ecto-sp13_S_contig12322.1944.1 vs. uniprot
Match: A0A7S2GE96_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GE96_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.840e-8
Identity = 59/202 (29.21%), Postives = 95/202 (47.03%), Query Frame = 1 
Query:    4 IRAGVLDCTAHPAQCEGSAKQKAPFLKVYPHGKGVDGDKRGFPSVLPATKLKEAVAEAGASLPEVVTVIPAGVGTQRIQDVV--QSFLGANIFSGESPMCLFVLSKKEEPTAVVKTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMMLMFSQQEGMNVAALNPDQPQPGEGEQAMVTAHYSPAHWGPVTHDHVSEFIM 603
            I A  ++C+A P  C G      P +KV+ +G     D    P   PA++  +A+  AG S+P++         T +I D+    + +GA   S +S + L ++S K+EP  ++K++A A     V   F   PD   L  L + +LP  + MFSQ  G + +  NP++ Q G          + P  +G  T   VS FI+
Sbjct:   33 IGAAQVNCSASPKLCSGGGA--LPHVKVFDYGIEEKEDILAAPEQFPASESAQALESAGESIPDL---------TLKINDMSLDNAIIGA---SQDSKILLVLMSNKDEPPVMLKSLAMALPVG-VAFAFFQSPDPQTLERLQINRLPMFITMFSQ--GASDSG-NPNEMQLG-------VRAFDPREFGKPTFSAVSNFIV 209
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BLAST of mRNA_Ecto-sp13_S_contig12322.1944.1 vs. uniprot
Match: A0A7S2GFB5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GFB5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.650e-8
Identity = 59/202 (29.21%), Postives = 95/202 (47.03%), Query Frame = 1 
Query:    4 IRAGVLDCTAHPAQCEGSAKQKAPFLKVYPHGKGVDGDKRGFPSVLPATKLKEAVAEAGASLPEVVTVIPAGVGTQRIQDVV--QSFLGANIFSGESPMCLFVLSKKEEPTAVVKTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMMLMFSQQEGMNVAALNPDQPQPGEGEQAMVTAHYSPAHWGPVTHDHVSEFIM 603
            I A  ++C+A P  C G      P +KV+ +G     D    P   PA++  +A+  AG S+P++         T +I D+    + +GA   S +S + L ++S K+EP  ++K++A A     V   F   PD   L  L + +LP  + MFSQ  G + +  NP++ Q G          + P  +G  T   VS FI+
Sbjct:  353 IGAAQVNCSASPKLCSGGGA--LPHVKVFDYGIEEKEDILAAPEQFPASESAQALESAGESIPDL---------TLKINDMSLDNAIIGA---SQDSKILLVLMSNKDEPPVMLKSLAMALPVG-VAFAFFQSPDPQTLERLQINRLPMFITMFSQ--GASDSG-NPNEMQLG-------VRAFDPREFGKPTFSAVSNFIV 529
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12322.1944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSP7_ECTSI2.030e-14995.42Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S2GE96_9STRA3.840e-829.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2GFB5_9STRA4.650e-829.21Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12322contigEcto-sp13_S_contig12322:1845..4787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size729
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-15_003070.1
Cds size729
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12322.1944.1prot_Ecto-sp13_S_contig12322.1944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12322 1845..4787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.9752104-CDS-Ecto-sp13_S_contig12322:1844..19971681462655.9752104-CDS-Ecto-sp13_S_contig12322:1844..1997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 1845..1997 +
1681462655.9887066-CDS-Ecto-sp13_S_contig12322:2454..25801681462655.9887066-CDS-Ecto-sp13_S_contig12322:2454..2580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 2455..2580 +
1681462655.9987237-CDS-Ecto-sp13_S_contig12322:2869..29951681462655.9987237-CDS-Ecto-sp13_S_contig12322:2869..2995Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 2870..2995 +
1681462656.0085914-CDS-Ecto-sp13_S_contig12322:3440..35631681462656.0085914-CDS-Ecto-sp13_S_contig12322:3440..3563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 3441..3563 +
1681462656.0194404-CDS-Ecto-sp13_S_contig12322:4238..43241681462656.0194404-CDS-Ecto-sp13_S_contig12322:4238..4324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 4239..4324 +
1681462656.0280435-CDS-Ecto-sp13_S_contig12322:4672..47871681462656.0280435-CDS-Ecto-sp13_S_contig12322:4672..4787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12322 4673..4787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12322.1944.1

>prot_Ecto-sp13_S_contig12322.1944.1 ID=prot_Ecto-sp13_S_contig12322.1944.1|Name=mRNA_Ecto-sp13_S_contig12322.1944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
QIRAGVLDCTAHPAQCEGSAKQKAPFLKVYPHGKGVDGDKRGFPSVLPAT
KLKEAVAEAGASLPEVVTVIPAGVGTQRIQDVVQSFLGANIFSGESPMCL
FVLSKKEEPTAVVKTVAAAFQSAKVRVMFIAKPDQDLLAALGVYKLPAMM
LMFSQQEGMNVAALNPDQPQPGEGEQAMVTAHYSPAHWGPVTHDHVSEFI
MSHLSSLDTSAFLQHAREMSATARLNRERLPVQLERFLNEVQ*
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mRNA from alignment at Ecto-sp13_S_contig12322:1845..4787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12322.1944.1 ID=mRNA_Ecto-sp13_S_contig12322.1944.1|Name=mRNA_Ecto-sp13_S_contig12322.1944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12322:1845..4787+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCCGAGCGGGAGTGCTGGACTGCACCGCGCACCCGGCCCAGTGCGA
GGGATCGGCGAAGCAGAAGGCGCCTTTCTTGAAGGTCTACCCTCACGGCA
AGGGCGTCGACGGGGACAAGCGGGGCTTCCCTTCCGTGCTCCCGGCAACG
AAGGTGAGAGCGGTTGCTGGTGATGGTTTTGGCGCCCACACGTGTGAGGT
ATAGGTAGCATCGTGCCACCGTTTGGGCTCGTGAGGGGGGGGCGTGATCA
TGATCTGGATTTGGGTAGGTCGGGGGGAGGGTGGGTTGGGTTGGCCTGCA
TCCCGTTGTTGTTTTTTATCTTTGGCATTTGGTTATGATATTTCTCCTAC
CGTCATATGACACCGCGCGGGGTGGCTTCCCACGCAAAGCCGTTCTCGGA
GTTGCGCGTCGAACCTCCCACAGTTGCAGCAGTCAAGACTAGTTTTGGCT
TCGTGATTTGAACGGGGGGGGCTAGAGGTGGAGGTGTGTGACGTGGGCGT
GCGTTGTTTTTCATCCCATCTGTGTGGTTATCAGCACGCGTTGCTTGTCA
CGTCCATCCCATCCTGTTCTCGTCCTGTTTTTTTTCCCCGTCCTTTGCCT
GGGTCTCCAGCTGAAGGAGGCCGTTGCCGAGGCGGGAGCGTCTCTCCCGG
AAGTTGTAACCGTCATACCGGCGGGAGTCGGCACCCAGAGGATCCAAGAC
GTGGTGCAGTCCTTCTTGGGCGCAAATATCTTTTCGGTGAGCATACTGCC
GTTTTTCAACGTACAACTGGCTGAGTACGGCAATCTTTTCGGTGAGTATG
CTGCCGTTTTCCGACCGACAGACTGCTGTGTGTGTCGCTGCGAAGCACTG
TTGCGTAGTCGACAAGCGTTTGATTCCGCGTGTCGCTGTCCTTTTTGTGC
AGTTTCTGTCCCTTTTTCTGGGCTTATTGTGTCTCATCTCTTCATTCTAA
AAACAAGTTCGGACTTGCTGCTGATGCTAATGCCGCTACTGCTGCTATTG
CTGCTGTATGCGGTGGTGTATGTAGGGCGAAAGCCCGATGTGCCTCTTCG
TGCTGTCGAAGAAGGAAGAGCCTACGGCTGTGGTCAAGACCGTAGCAGCG
GCCTTCCAGTCGGCCAAGGTTCGCGTCATGTTCATCGCGAAGCCCGATCA
GGTATGCATGTATGTCCGGGATTTTCGGTTTTGTGTGGAAAGCTTTTCTC
GTGCGTGCAGCTCGGCAACGGTCGCTCTGGCCGTCGTAGTTCAAGGCAAG
GTGGTGTTTTTTCGCTCTGTGGCTTGCGCCGTGTCCCGAATTTGCTGTTG
TGGTTTCGACACCAAGAACCACTGGATAGCATCAAGCGATTCCTCTGGCG
CTGTCACCTCGTGTGATTTGCTGTGCTAAAACGTTTTCCTACATGTTTGC
GTCTGTGCTGCTTCCTTTTGTTTTCTTGTCTCAATGCGTACCGTACACGT
AACTTTTGTTTGGAGAGAGAGTGTGAATGCGAGCGAGATCTGTTGTTTCT
CCGACGAAAACCTCCCGCTCATGGTCTCGCGCATGTTTGCCTGCTGTTTC
TTCACGTCCGCTTTCCTGTGTTTCTTGGTGGGGGGGGGGTCCGCAGGATC
TTCTCGCAGCTCTCGGCGTGTACAAGCTTCCGGCCATGATGCTCATGTTC
TCGCAACAGGAGGGCATGAACGTCGCCGCCCTGAACCCCGATCAGCCACA
GCCCGGAGAAGGGGAGCAGGTGATTCTTTTCCTCCTTTTCGGCCTGTTGT
TGTTGATTATGTTATTGTCACTGCTTTCATCCGCATATCTGGCCGTGGCT
GTGGCGGTGGTGGTGATGCTGGTACTGCTGCTGCTATCTTGACACGGAGA
ATCACGTCCGGAGGTATCGAGGACGACATGATCTGTGTTCACGTGCCTCC
CGTGTTGTTTTTTTGGATAGGTCGCATGACAGTCATTGGCTACACAGAAT
CACGGAGCGAGAAATGGCGGCGCGTTATCCAAGTGTCAAGCGAACGTTGT
CCCACATCGAGGATGGCCGTTTCTTGGAGTCTAAAGTGAACGTTATCCCA
CGACGCTCGTGTTGCGGGCGTTCCGCTCGCCCTCCTGTTGCGCTTCATAC
GCCCCTCGCTCGTTCCCTCTATCTCTGTCGTTTTTGCGCGCTCGCTGGCT
CATCCCCCTCCCCTCCTCTCCTGCTTTCATCCCCCGCGCGAAGCTCTTTC
TGTGTGTGTCCTCCCTCGCGGCCGGCAGTGGCGTTCACTTGTGACCCTAT
CCCCCTTTGGTTCTCCCTGTGGGCTCTCTGTCTCTCACACAGGCCGTGAC
TACTATATGAAGTAGATGAAGTGAACCAGCTTGCGGACCTCTTCCTTTTT
GGTCCTGATTTTTGTTTCGGTGTTTTCTTTGCTTTGTCTCCCAGGCCATG
GTGACCGCGCACTATTCCCCGGCTCACTGGGGCCCCGTGACTCACGACCA
CGTGAGCGAGTTCATCATGTCTCACCTCAGGTGCGGTTAGCGGCAGTTTT
TTCGCAGTTTGATCCTAGTTCTGTCCGGAAACATGGCGTCACTTCTACCG
TAGAGGGGTCACGACTCATGACCGCGAGAGCGAATGTTCATCACGTCAGC
GAAAACGGGGACGCGGTCGAAGCGTTGAGAGACTAGGAAAACAGGGACCT
AGAGAAAGTAGGGAGGCCTTCGAAACCGACATTAGAACGGACGCAATATC
TGACTGAGCATGACTTGGCCCTCACACGTACGATAGGTAACTATAGCAGC
TCTCTGAAAAACTCGACCAGTTCCCCCCTGCTGCCTTTCGTGTTGTCGTC
GCGGCCGTGGCTGTTCTCCATTTATCAGCTCCCTCGACACGAGCGCCTTC
CTGCAGCACGCTCGCGAGATGTCGGCGACGGCCAGGCTCAACCGGGAGAG
GCTCCCGGTTCAGCTCGAGAGGTTCCTCAACGAGGTGCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12322:1845..4787+

>mRNA_Ecto-sp13_S_contig12322.1944.1 ID=mRNA_Ecto-sp13_S_contig12322.1944.1|Name=mRNA_Ecto-sp13_S_contig12322.1944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12322:1845..4787+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGATCCGAGCGGGAGTGCTGGACTGCACCGCGCACCCGGCCCAGTGCGA
GGGATCGGCGAAGCAGAAGGCGCCTTTCTTGAAGGTCTACCCTCACGGCA
AGGGCGTCGACGGGGACAAGCGGGGCTTCCCTTCCGTGCTCCCGGCAACG
AAGCTGAAGGAGGCCGTTGCCGAGGCGGGAGCGTCTCTCCCGGAAGTTGT
AACCGTCATACCGGCGGGAGTCGGCACCCAGAGGATCCAAGACGTGGTGC
AGTCCTTCTTGGGCGCAAATATCTTTTCGGGCGAAAGCCCGATGTGCCTC
TTCGTGCTGTCGAAGAAGGAAGAGCCTACGGCTGTGGTCAAGACCGTAGC
AGCGGCCTTCCAGTCGGCCAAGGTTCGCGTCATGTTCATCGCGAAGCCCG
ATCAGGATCTTCTCGCAGCTCTCGGCGTGTACAAGCTTCCGGCCATGATG
CTCATGTTCTCGCAACAGGAGGGCATGAACGTCGCCGCCCTGAACCCCGA
TCAGCCACAGCCCGGAGAAGGGGAGCAGGCCATGGTGACCGCGCACTATT
CCCCGGCTCACTGGGGCCCCGTGACTCACGACCACGTGAGCGAGTTCATC
ATGTCTCACCTCAGCTCCCTCGACACGAGCGCCTTCCTGCAGCACGCTCG
CGAGATGTCGGCGACGGCCAGGCTCAACCGGGAGAGGCTCCCGGTTCAGC
TCGAGAGGTTCCTCAACGAGGTGCAGTAG
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