prot_Ecto-sp13_S_contig12318.1943.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12318.1943.1
Unique Nameprot_Ecto-sp13_S_contig12318.1943.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length501
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12318.1943.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI)

HSP 1 Score: 513 bits (1320), Expect = 8.110e-168
Identity = 290/321 (90.34%), Postives = 294/321 (91.59%), Query Frame = 0 
Query:  181 KEEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTILGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAALTACSAAAAAGDNVGEVGWSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 501
            K+EKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGA+IVLD MSNEGLWATTSTYNT LWYFRQERDAKGALSMLQSLRESE VKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEA ATGG SSFASKDLLDARLVLVQAVGGDVLQGL+EMSERGVTADEST+LGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXX    TAVCPRPSYRSYLAAL                  SGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC
Sbjct:  256 KKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXX---TTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXX-XSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 572
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BLAST of mRNA_Ecto-sp13_S_contig12318.1943.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE)

HSP 1 Score: 475 bits (1222), Expect = 1.250e-151
Identity = 282/349 (80.80%), Postives = 286/349 (81.95%), Query Frame = 0 
Query:  181 KEEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTILGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAALTACSAAAAAGDNVGEVGW--SGDGVRGDWRAAKEVLRMMWEDEAARAAK--------------------------GDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 501
            KEEKVERKA PASRAGEMGRFWAASTLLQESLACNYTAGA+IVL  MS EGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESE VKPDQSSYTLAIQACVWSGSRVEEAWAIVEEA+AAATGG  SFASKDLLDARL LVQAVGGDVL GLREMSERGVTADEST+LGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAA                     SGDGVRGDWRAAKEVLRMMWEDEAAR                             G +A  GTWSTELQEAL LGPSHVTMPAVPDAACYQLAMECC
Sbjct:  411 KEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECC 759
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12318.1943.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKT0_ECTSI8.110e-16890.34Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L195_9PHAE1.250e-15180.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 311..501
e-value: 9.7E-8
score: 33.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 180..305
e-value: 1.8E-10
score: 42.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 223..283
e-value: 0.011
score: 15.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 205..300

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12318contigEcto-sp13_S_contig12318:3..4575 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12318.1943.1mRNA_Ecto-sp13_S_contig12318.1943.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12318 3..4575 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12318.1943.1 ID=prot_Ecto-sp13_S_contig12318.1943.1|Name=mRNA_Ecto-sp13_S_contig12318.1943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp
RTLTSFDETDLELALQAGQLTADQLKIKDPTTTPASSSTTKTKATTAATT
RKKNKKNPHVDDKKTAATAAAAPKHSTGPPTLASSSSGDLPSAITTTTTK
NARGKERGSADGGKKKTKGGKGPSSLAAAKDGAAGGSAQSGAKHGGGKTT
STTTTTATASAKKKPQRGGGGGAETATGGQKEEKVERKAAPASRAGEMGR
FWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQER
DAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAE
AAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTIL
GVIEACAQRGDAAGALDILQMMRGAAAAAASASSAAKKKKKGSAAATAVC
PRPSYRSYLAALTACSAAAAAGDNVGEVGWSGDGVRGDWRAAKEVLRMMW
EDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMEC
C
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat