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Homology
BLAST of mRNA_Ecto-sp13_S_contig12318.1943.1 vs. uniprot
Match: D8LKT0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKT0_ECTSI) HSP 1 Score: 513 bits (1320), Expect = 8.110e-168 Identity = 290/321 (90.34%), Postives = 294/321 (91.59%), Query Frame = 1
Query: 541 KEEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTILGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAALTACSAAAAAGDNVGEVGWSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 1503
K+EKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGA+IVLD MSNEGLWATTSTYNT LWYFRQERDAKGALSMLQSLRESE VKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEA ATGG SSFASKDLLDARLVLVQAVGGDVLQGL+EMSERGVTADEST+LGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXX TAVCPRPSYRSYLAAL SGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC
Sbjct: 256 KKEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLDTMSNEGLWATTSTYNTFLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAVATGGDSSFASKDLLDARLVLVQAVGGDVLQGLKEMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXX---TTAVCPRPSYRSYLAALXXXXXXXXXXXXXXXX-XSGDGVRGDWRAAKEVLRMMWEDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 572
BLAST of mRNA_Ecto-sp13_S_contig12318.1943.1 vs. uniprot
Match: A0A6H5L195_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L195_9PHAE) HSP 1 Score: 475 bits (1222), Expect = 1.250e-151 Identity = 282/349 (80.80%), Postives = 286/349 (81.95%), Query Frame = 1
Query: 541 KEEKVERKAAPASRAGEMGRFWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAEAAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTILGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAALTACSAAAAAGDNVGEVGW--SGDGVRGDWRAAKEVLRMMWEDEAARAAK--------------------------GDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMECC 1503
KEEKVERKA PASRAGEMGRFWAASTLLQESLACNYTAGA+IVL MS EGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESE VKPDQSSYTLAIQACVWSGSRVEEAWAIVEEA+AAATGG SFASKDLLDARL LVQAVGGDVL GLREMSERGVTADEST+LGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAA SGDGVRGDWRAAKEVLRMMWEDEAAR G +A GTWSTELQEAL LGPSHVTMPAVPDAACYQLAMECC
Sbjct: 411 KEEKVERKAGPASRAGEMGRFWAASTLLQESLACNYTAGAEIVLHTMSKEGLWATTSTYNTLLWYFRQERDAKGALSMLQSLRESENVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAQAAATGGDYSFASKDLLDARLALVQAVGGDVLHGLREMSERGVTADESTMLGVIEACAQRGDAAGALDILQMMRGAXXXXXXXXXXXXXXXXXXXXATAVCPRPSYRSYLAAXXXXXXXXXXXXXXXXXXXXXSGDGVRGDWRAAKEVLRMMWEDEAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGLAWCGTWSTELQEALRLGPSHVTMPAVPDAACYQLAMECC 759
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 0 |
| Seed ortholog score | 513.1 |
| Seed ortholog evalue | 1.5e-142 |
| Seed eggNOG ortholog | 2880.D8LKT0 |
| Model size | 1503 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| EggNOG free text desc. | endonuclease activity |
| EggNOG OGs | KOG4197@1,KOG4197@2759 |
| Cds size | 1503 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462655.864549-CDS-Ecto-sp13_S_contig12318:2..109 | 1681462655.864549-CDS-Ecto-sp13_S_contig12318:2..109 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 3..109 - |
| 1681462655.8799827-CDS-Ecto-sp13_S_contig12318:754..1099 | 1681462655.8799827-CDS-Ecto-sp13_S_contig12318:754..1099 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 755..1099 - |
| 1681462655.8914218-CDS-Ecto-sp13_S_contig12318:1380..1459 | 1681462655.8914218-CDS-Ecto-sp13_S_contig12318:1380..1459 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 1381..1459 - |
| 1681462655.9013479-CDS-Ecto-sp13_S_contig12318:2009..2141 | 1681462655.9013479-CDS-Ecto-sp13_S_contig12318:2009..2141 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 2010..2141 - |
| 1681462655.9114296-CDS-Ecto-sp13_S_contig12318:2862..2953 | 1681462655.9114296-CDS-Ecto-sp13_S_contig12318:2862..2953 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 2863..2953 - |
| 1681462655.9215767-CDS-Ecto-sp13_S_contig12318:3547..3631 | 1681462655.9215767-CDS-Ecto-sp13_S_contig12318:3547..3631 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 3548..3631 - |
| 1681462655.9328332-CDS-Ecto-sp13_S_contig12318:3910..4575 | 1681462655.9328332-CDS-Ecto-sp13_S_contig12318:3910..4575 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12318 3911..4575 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12318.1943.1 >prot_Ecto-sp13_S_contig12318.1943.1 ID=prot_Ecto-sp13_S_contig12318.1943.1|Name=mRNA_Ecto-sp13_S_contig12318.1943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp
RTLTSFDETDLELALQAGQLTADQLKIKDPTTTPASSSTTKTKATTAATT RKKNKKNPHVDDKKTAATAAAAPKHSTGPPTLASSSSGDLPSAITTTTTK NARGKERGSADGGKKKTKGGKGPSSLAAAKDGAAGGSAQSGAKHGGGKTT STTTTTATASAKKKPQRGGGGGAETATGGQKEEKVERKAAPASRAGEMGR FWAASTLLQESLACNYTAGAQIVLDAMSNEGLWATTSTYNTLLWYFRQER DAKGALSMLQSLRESEKVKPDQSSYTLAIQACVWSGSRVEEAWAIVEEAE AAATGGHSSFASKDLLDARLVLVQAVGGDVLQGLREMSERGVTADESTIL GVIEACAQRGDAAGALDILQMMRGAAAAAASASSAAKKKKKGSAAATAVC PRPSYRSYLAALTACSAAAAAGDNVGEVGWSGDGVRGDWRAAKEVLRMMW EDEAARAAKGDVAVPGTWSTELQEALSLGPSHVTMPAVPDAACYQLAMEC C back to topmRNA from alignment at Ecto-sp13_S_contig12318:3..4575- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig12318.1943.1 ID=mRNA_Ecto-sp13_S_contig12318.1943.1|Name=mRNA_Ecto-sp13_S_contig12318.1943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12318:3..4575- (Ectocarpus species13 EcNAP12_S_4_19m) AGAACGCTCACGAGCTTCGACGAGACCGACCTCGAGCTGGCCCTGCAAGC
GGGCCAGCTGACCGCGGACCAGCTCAAGATCAAGGACCCAACGACCACAC
CCGCATCATCCTCCACAACCAAAACGAAAGCTACAACGGCTGCCACCACC
AGGAAGAAGAACAAGAAGAATCCCCACGTAGACGACAAGAAGACGGCTGC
AACTGCTGCCGCGGCACCCAAGCATTCTACGGGACCCCCTACCCTTGCCT
CCTCCTCCTCAGGCGACCTCCCCTCGGCGATCACGACCACCACCACGAAG
AACGCTCGGGGGAAGGAAAGGGGCTCCGCAGATGGGGGCAAGAAGAAAAC
AAAGGGGGGGAAGGGGCCGTCGTCTCTCGCTGCCGCGAAAGACGGTGCGG
CGGGGGGGAGTGCCCAGAGCGGTGCCAAGCATGGCGGTGGCAAGACAACA
TCCACCACCACCACCACCGCCACCGCTTCCGCGAAGAAAAAACCACAGCG
CGGAGGCGGTGGCGGCGCGGAGACGGCTACTGGTGGGCAGAAGGAGGAGA
AGGTGGAGAGAAAGGCGGCCCCCGCGTCTAGGGCGGGGGAGATGGGCCGC
TTCTGGGCGGCCTCGACCCTGCTGCAGGAGTCGCTAGCGTGTAATTACAC
GGCAGGGGCGCAAATGTGAGCGGGGTTGACTCGTGGGCGAAATATTCAAG
CCGCCAATTGTTGTTGTTGGTGCTGTCGAATAGTATTATAGTTGTTGTTG
TTGTTGTGGGTGTGGTTGTCATCTGTGTTATTTTTCCTTTACGGTGCACG
GACACTGTTTGTCATGGGGTAACGAGCTTTTAGTTTTTTTGTTTTCATCG
TTTTTTTTTTTCGGGGTTTTTTTTTTTTTCCTTGAAAAATGATCCCCCCC
CCCCCCCCCCCTCCCTACTGTTACACACTCGCGCGTGCTTGCAGAGTGTT
GGATGCGATGAGCAACGAGGGGCTGTGGGCGACAACAAGCACGTACAACA
CTCTCCTGTGGTACTTTCGCCAGGAGAGGTGCGTATGCGAGGCTGCAAGC
TGTGAACCAGCAGGAACGGCGATTGGGTTACAAGGCTGTACCGGGAGGAG
GAGGGGCACCGTGGTTGGGTTTTCTACGCCCTCTTGTAGAATTTCGGCGC
TAAATAGAGGCCCGCCTTCATGTTAGCCTTCGTGTGAGAAGTGTGCGGTT
TGCGGGCGGGTACGCCGAATGTGTTGTTTGCTTATCCATGCTTTGGAGTT
GGTGGCAAGGCGGTGTAAAACTGAGCGATCATGTGGCAACTTTGGAACAA
CTTTTTCTTGGCGTGCATGGCGTCATTCCACGGCTGCGCTTCCCCCCTCC
CTTTGTAAGAAGTGGACTGAAAAGGCGAGAAGTGATGTCGATAGGCTAGG
GAAAAAAAAATTGAGCCGCCGCAAGAAGGAACGCTTGGTCACCGGTGATC
GGTCGTGTGGGAACACTACTCCGTCCTCTCCAGGACGCGCGGCCAACGGC
TTTCCAAATATTTAAGGCATGCTAAACATAACGGTACGCCGCTCTCCAAC
CGCTGCCTCGATTCCCCCGCCTCCGCCCCGCTTGAACTCCCTGGCACATG
GAAATGCTTTTGTTTTGTGCAGGGATGCAAAGGGGGCGTTGTCGATGCTG
CAGAGCCTGCGCGAGAGCGAGAAGGTCAAGCCTGATCAGTCGTCCTACAC
TCTCGCCATTCAGGTGGAAGTTGCGCTCGGGAATACGTGTTCGCATGTCA
TTTCGCGTGCGTACGAGCCCATCTGGTTCTGCGTGGCACTATTTTTTTTG
TTTTTTTCGGATGATTCCTCGCGTGCTTTTCGTTCGCGCAACTGCTCCCG
CCTGTGTGTGTGTGTGTGTGTGTGTGTCTCTCTCTGTCTGCCTGTGTGTG
TGAGTGTGTGCCTGTTCGTCTGCCTGTCTGTCTGTGTTTCTGTCTTGTCG
GCCTCCTTCAAGCACCCCTTTCGTACATTTTTTGTACCGAGACAGCATCG
AGGTCTCCTCTCCTTGCGTACCCCCCCCCCTCTTTAGCCACCTCTTTGGG
CACACTCCTCGGAAAACGCCTTCCTTTGTTGCACACGGTGCTCGTAGATT
TTGTACCCTCTCGGAGTGAACCCATACCCCAACGCTAACGCTAACGCTAA
CGCTAACCCTCGCCTCTTCTTTCGCGCACGCCTCGGAAAAACCTTCCTTT
GTCGCGCGCGTCGCCAGTCTGCGGATCCCCCTCGGATTGAACCCAAACAC
TAACGCTAACCCTCTCCTCGGCAAGGAAAAACAATCAGAAACGTGCTGCC
AACAACCACTCGTACGCGTATGCACGCACATCTGTATCTATGCATACATG
CATGCGTACTGCACGTGCTGCAAAGCAACAAGTAATAACTCGTACGTGTG
TGTGTGTGTGTCTATGCTGCGTGTATGCATGAAGGCGTGCGTGTGGTCAG
GGAGTCGCGTGGAGGAGGCGTGGGCCATAGTCGAGGAGGCGGAGGCGGCG
GCCACGGGGGGGCACTCCTCGTTCGCCAGCAAGGACCTTCTCGACGCTCG
CCTCGTGCTCGTACAGGTGAACGCTCGCTTGGCACATTCCCAAGGCTTCT
TTCTGTTGGTATTGGTTTTAGCTTTTTTAACAATCATTGATTTATTTCGA
GCTCATTCATCACGATTAGGGAGGGGTAGAGAGAGACGGAGGAAGGAACA
AGCGCTAGACACACGCAAGCCTCGTGCTCGTCCAGGTGAATGCTCGCTGG
ATCGATCGCTCGATCGATCTATCGATCTCCCCGCCTCGTTTTTTTTTTGC
AGTCGTGTATGCTACCTGCTACCTTTTTTCGACACCAACCTACTTGAATT
CTATCTCCCCTATTAACAGAGCGGCCGAGCTCGGCCTTTCACCTACAACA
CGACCCACGTTCCCTTCAGCCCCTATCCCCCTTTCGCCGCCGCGTACGTA
TTGGCGTGGCTTGGTTAGGCCTGGTGGTGCTTCGGTTGGCGTTCGCCCTT
CGTTTTTGCTGCTGCTGCTGCTGCTACTGCTGCTGCTGTTCCTCGGTTGT
CGCGCACGTACCTGCTCGCTTACATCCTTCGCTTGTACACACGCTCCTAT
GCTGTGCCTTCGCCAGGCCGTAGGCGGCGACGTCTTGCAAGGGCTGAGGG
AGATGTCGGAGAGGGGGGTCACCGCAGACGAGAGCACCATCTTGGGTGAG
ATTTTTTTTGTGTTTACCCGTAAAGGCCTTGCCCGTTGATTGATTTACAG
TACTGATGTTGTTGCGTTGCGCGTTGTTTTTCTTTTTTTGTGAAGCCTGT
GGTTGTTTTCGGGAGCGGTAAGGGAATCAGCAGTCATCTCGAAAGCAGGG
CAATGCGAGAAGTGGAGAAGCAAGTGAGCCTATTTGTGTTTTACCTCCGT
TCAGCACCCACACGCATGCGCACCCACCTCTCCACCCACCTATGCTCTCC
TGAATTTGGGTTTCGATGGATGGCAGGCGTGATTGAGGCCTGCGCCCAGC
GCGGGGACGCGGCCGGCGCTCTGGACATCCTCCAGATGATGCGAGGGGCC
GCCGCCGCTGCCGCCTCCGCTAGCTCGGCTGCGAAAAAGAAGAAGAAAGG
ATCGGCGGCGGCGACGGCAGTTTGTCCCCGACCGTCATACCGGTCCTACC
TAGCGGCGCTGACCGCGTGCTCGGCCGCCGCCGCCGCCGGGGACAACGTT
GGCGAAGTCGGCTGGAGCGGCGACGGGGTGCGCGGGGACTGGCGGGCTGC
GAAGGAGGTGCTGCGGATGATGTGGGAGGACGAGGCGGCGCGGGCGGCCA
AGGGGGACGTCGCTGTACCTGGTACGGGTTTTAGGGTGGGGGGGGGCAGG
GGCGTTTGAGGGAGGGAGGGGGTGGGGGGGGAGGTTGGCGTGGTGCGGTT
GGTCGTTGGCGCGTCGAGTACAGCTGCCGGTAGCGGTGGCGGCGACTGGG
GCCGGCGAGGTGGTGTTGCTTCGAACTGCATTGTTTTTTATCGTTTGGAC
GGCGAATGGTCAGCGCGGAGAAATCGAAGAGGCCAGGTCGCGTGGTGTAT
CTTGACCCAGACTGAAATGCGCGCGTTTTACGTCTCTCGACGAAAAACCT
GGCTTGCCTTTTACTGCTGTACGCTGCCCTTCTAAAAGGTACCCAGATAA
CTGTCGTCCTGCAGTTTGAACCAGACCACGCGAGGGCGGACAACCTTTTT
CTCGCGTGCTGCTCTTGGGCGTTTCCAATTACGGAACGCGTTCATATCCG
TACAACAACAAAACAAATGGTGCGCCCCGGCATTGACGCCAAACCCCGAT
GATCCGATTCTCCCGGGGAAAAGTGTCATCTCTGGCCACCACTTTTTTTC
TCCGAAATGCTGTTGTGAAACGCCCATGGAGTGCGTTCAATAGCCACAAA
ACTACCACACACGCAAAGCACGCCCACACATGCCCACTCCTTCATTCTTG
TCACCCGCTGTACCAGGTACGTGGTCGACAGAGCTCCAGGAAGCCCTGAG
CCTGGGGCCCTCGCACGTGACAATGCCGGCCGTGCCGGACGCGGCGTGCT
ACCAGCTGGCCATGGAGTGCTGC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig12318:3..4575- >mRNA_Ecto-sp13_S_contig12318.1943.1 ID=mRNA_Ecto-sp13_S_contig12318.1943.1|Name=mRNA_Ecto-sp13_S_contig12318.1943.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12318:3..4575- (Ectocarpus species13 EcNAP12_S_4_19m) AGAACGCTCACGAGCTTCGACGAGACCGACCTCGAGCTGGCCCTGCAAGC GGGCCAGCTGACCGCGGACCAGCTCAAGATCAAGGACCCAACGACCACAC CCGCATCATCCTCCACAACCAAAACGAAAGCTACAACGGCTGCCACCACC AGGAAGAAGAACAAGAAGAATCCCCACGTAGACGACAAGAAGACGGCTGC AACTGCTGCCGCGGCACCCAAGCATTCTACGGGACCCCCTACCCTTGCCT CCTCCTCCTCAGGCGACCTCCCCTCGGCGATCACGACCACCACCACGAAG AACGCTCGGGGGAAGGAAAGGGGCTCCGCAGATGGGGGCAAGAAGAAAAC AAAGGGGGGGAAGGGGCCGTCGTCTCTCGCTGCCGCGAAAGACGGTGCGG CGGGGGGGAGTGCCCAGAGCGGTGCCAAGCATGGCGGTGGCAAGACAACA TCCACCACCACCACCACCGCCACCGCTTCCGCGAAGAAAAAACCACAGCG CGGAGGCGGTGGCGGCGCGGAGACGGCTACTGGTGGGCAGAAGGAGGAGA AGGTGGAGAGAAAGGCGGCCCCCGCGTCTAGGGCGGGGGAGATGGGCCGC TTCTGGGCGGCCTCGACCCTGCTGCAGGAGTCGCTAGCGTGTAATTACAC GGCAGGGGCGCAAATAGTGTTGGATGCGATGAGCAACGAGGGGCTGTGGG CGACAACAAGCACGTACAACACTCTCCTGTGGTACTTTCGCCAGGAGAGG GATGCAAAGGGGGCGTTGTCGATGCTGCAGAGCCTGCGCGAGAGCGAGAA GGTCAAGCCTGATCAGTCGTCCTACACTCTCGCCATTCAGGCGTGCGTGT GGTCAGGGAGTCGCGTGGAGGAGGCGTGGGCCATAGTCGAGGAGGCGGAG GCGGCGGCCACGGGGGGGCACTCCTCGTTCGCCAGCAAGGACCTTCTCGA CGCTCGCCTCGTGCTCGTACAGGCCGTAGGCGGCGACGTCTTGCAAGGGC TGAGGGAGATGTCGGAGAGGGGGGTCACCGCAGACGAGAGCACCATCTTG GGCGTGATTGAGGCCTGCGCCCAGCGCGGGGACGCGGCCGGCGCTCTGGA CATCCTCCAGATGATGCGAGGGGCCGCCGCCGCTGCCGCCTCCGCTAGCT CGGCTGCGAAAAAGAAGAAGAAAGGATCGGCGGCGGCGACGGCAGTTTGT CCCCGACCGTCATACCGGTCCTACCTAGCGGCGCTGACCGCGTGCTCGGC CGCCGCCGCCGCCGGGGACAACGTTGGCGAAGTCGGCTGGAGCGGCGACG GGGTGCGCGGGGACTGGCGGGCTGCGAAGGAGGTGCTGCGGATGATGTGG GAGGACGAGGCGGCGCGGGCGGCCAAGGGGGACGTCGCTGTACCTGGTAC GTGGTCGACAGAGCTCCAGGAAGCCCTGAGCCTGGGGCCCTCGCACGTGA CAATGCCGGCCGTGCCGGACGCGGCGTGCTACCAGCTGGCCATGGAGTGC TGC back to top
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