prot_Ecto-sp13_S_contig80877.19427.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig80877.19427.1
Unique Name	prot_Ecto-sp13_S_contig80877.19427.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	48

Homology

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BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.700e-18
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0

Query:    1 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 48
            MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAA VGILEG
Sbjct:  308 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355

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BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 2.260e-17
Identity = 45/48 (93.75%), Postives = 45/48 (93.75%), Query Frame = 0

Query:    1 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 48
            MDIADVEGDREAGVRTLPVLMGRQAALVFATALLS GV AA VGILEG
Sbjct:  190 MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5LBF2_9PHAE	1.700e-18	97.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LD89_ECTSI	2.260e-17	93.75	Prenyltransferase, UbiA family, Putative 4-hydroxy...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 25..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..24
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 47..48
None	No IPR available	TMHMM	TMhelix		coord: 24..46

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig80877	contig	Ecto-sp13_S_contig80877:237..380 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig80877.19427.1	mRNA_Ecto-sp13_S_contig80877.19427.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig80877 225..380 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig80877.19427.1 ID=prot_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG