mRNA_Ecto-sp13_S_contig80877.19427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 8.420e-21 Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAA VGILEG
Sbjct: 304 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEG 355
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 8.310e-20 Identity = 49/52 (94.23%), Postives = 49/52 (94.23%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLS GV AA VGILEG
Sbjct: 186 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEG 237
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A383WBC0_TETOB (Uncharacterized protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBC0_TETOB) HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6 Identity = 28/51 (54.90%), Postives = 38/51 (74.51%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILE 153
RE+LMD+ D EGDR+AGV TLPVL+G+ AAL+ A + +G G A V +L+
Sbjct: 290 REILMDLNDAEGDRQAGVWTLPVLLGKPAALLCAASCALLGCGGALVRLLQ 340
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A0U5CWL1_9EURY (Digeranylgeranylglyceryl phosphate synthase n=6 Tax=Halobacteriaceae TaxID=2236 RepID=A0A0U5CWL1_9EURY) HSP 1 Score: 52.0 bits (123), Expect = 2.110e-6 Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
REV+ D+ DV GDRE G+RTLP++MG + ALV T LL V V A+ V L G
Sbjct: 174 REVIKDVEDVAGDREEGLRTLPIVMGERRALVLGTVLLIVAVLASPVPYLAG 225
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: UPI001F27BF68 (geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Halobacterium sp. TGN-42-S1 TaxID=2902625 RepID=UPI001F27BF68) HSP 1 Score: 50.8 bits (120), Expect = 5.490e-6 Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
REV+ D+ DV GDRE G+RTLPV +G + AL+ ALL+V V A+ V L G
Sbjct: 175 REVVKDVEDVAGDREEGLRTLPVAVGERRALLLGAALLAVAVAASPVPYLAG 226
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A7J7PTZ1_9CHLO (UbiA prenyltransferase family n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PTZ1_9CHLO) HSP 1 Score: 50.4 bits (119), Expect = 8.050e-6 Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILE 153
RE+LMD+ D EGDR+A V TLPVL+G+ AAL+ A +L +G G A +L+
Sbjct: 211 REILMDLNDAEGDRQARVMTLPVLLGKPAALLCACTVLLLGSGGALARLLQ 261
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: M0HSH6_HALEO (Digeranylgeranylglyceryl phosphate synthase n=3 Tax=Haloferax TaxID=2251 RepID=M0HSH6_HALEO) HSP 1 Score: 50.1 bits (118), Expect = 1.040e-5 Identity = 24/52 (46.15%), Postives = 39/52 (75.00%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
RE++ D+ D+ GD+E G+RTLP+++G + +LVF T +L V V A++V L+G
Sbjct: 174 REIVKDVEDIAGDKEEGLRTLPIVVGERPSLVFGTGVLVVAVLASAVPYLDG 225
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A4S3TPE4_9EURY (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Salinadaptatus halalkaliphilus TaxID=2419781 RepID=A0A4S3TPE4_9EURY) HSP 1 Score: 49.7 bits (117), Expect = 1.430e-5 Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
RE++ D+ D+EGDRE G+RTLP+ +G + AL A LL VGV A+ V L G
Sbjct: 174 REIIKDVEDLEGDREEGLRTLPIAIGERRALQIALGLLVVGVFASPVPFLLG 225
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: A0A0D2MBQ7_9CHLO (Digeranylgeranylglyceryl phosphate synthase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MBQ7_9CHLO) HSP 1 Score: 48.1 bits (113), Expect = 5.190e-5 Identity = 20/35 (57.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFAT 105
RE++MD+ D+EGDR AG++TLPV++G++ AL+ AT
Sbjct: 189 REIVMDLTDLEGDRAAGIKTLPVMIGQRGALLAAT 223
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Match: UPI001F402B72 (geranylgeranylglycerol-phosphate geranylgeranyltransferase n=1 Tax=Halobaculum sp. CBA1158 TaxID=2904243 RepID=UPI001F402B72) HSP 1 Score: 47.8 bits (112), Expect = 6.970e-5 Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 1 REVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEG 156
REV+ D+ DV GDRE G+RTLP++ G + AL ATA ++V A+++ L G
Sbjct: 174 REVVKDVEDVAGDREEGLRTLPIVAGERPALALATAAMAVAALASALPYLRG 225 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80877.19427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig80877.19427.1 >prot_Ecto-sp13_S_contig80877.19427.1 ID=prot_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp MDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAASVGILEGback to top mRNA from alignment at Ecto-sp13_S_contig80877:225..380+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig80877.19427.1 ID=mRNA_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80877:225..380+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80877:225..380+ >mRNA_Ecto-sp13_S_contig80877.19427.1 ID=mRNA_Ecto-sp13_S_contig80877.19427.1|Name=mRNA_Ecto-sp13_S_contig80877.19427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80877:225..380+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |