mRNA_Ecto-sp13_S_contig12314.1941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE) HSP 1 Score: 320 bits (819), Expect = 6.660e-98 Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1
Query: 4 FCLGSLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 501
FCLG LLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEA+VVAAASAAGFDLVVTT FRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESS+CSENHRRGRSNA
Sbjct: 647 FCLGLLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSTCSENHRRGRSNA 812
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI) HSP 1 Score: 296 bits (757), Expect = 1.250e-91 Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1
Query: 49 AATWFTPYMSGLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 501
AATWFTPYMSGLGLRCLVVLEDVWEA+VVAAASAAGFDLVVTT FRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA
Sbjct: 746 AATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 896
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 2.870e-9 Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 1
Query: 79 GLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAW 408
G GL+CL V+++VWE +VV AG ++++T +LV ++V L+ EA S+LR+ + L + LP A +I+ CG +A+ L G L VR RSD AW
Sbjct: 276 GEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWE-GEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAW 384
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 63.2 bits (152), Expect = 2.490e-8 Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL 450
LVVL+DVWE +VV A GF ++VTT R +V C L++G + +EA LL + SG + + V+ CG L L L IAGSLP V+ + A AW L L + T++
Sbjct: 266 LVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRC--LELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKM 384
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 4.680e-8 Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSAD------GVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL 450
LVVL+DVWE +VV A GF L++TT R +V D RL++G + +EA LLR+ SG + P D V+ CG L L L IAGS+ AV+ + A AW L + A ++
Sbjct: 174 LVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDP--AGRLELGDMTEEEALELLRKTSGT-----VDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKM 291
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 62.0 bits (149), Expect = 6.220e-8 Identity = 51/137 (37.23%), Postives = 67/137 (48.91%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLV--PDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGV-------IKACGALALPLTIAGSLPAVRCRS-DEAAWANLYSILSHKATRLGESSSCSEN 477
LVVL+DVWE +VVAA G ++VTT R +V P L++G +A DEA LL + SG Q DGV + CG L L L IAGS+P V+ + + AW L + T + E S N
Sbjct: 366 LVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGG----LLELGDMAEDEALELLWKTSGTVGQ-----PGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRN 493
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 7.850e-8 Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
LVVL+DVWE +VV A GF +++TT R +V RL+VG + +EA LLR+ SG Q + V+ CG L L L IAGS+ V+ + A AW L L + A ++ GE SS
Sbjct: 335 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVP--AGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSS 461
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 8.540e-8 Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
LVVL+DVWE +VV A GF +++TT R +V RL++G + +EA LLR+ SG Q + V+ CG L L L IAGS+ VR + A AW L L + A ++ GE SS
Sbjct: 389 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--GLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSS 515
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 8.680e-8 Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
LVVL+DVWE +VV A GF +++TT R +V RL++G + +EA LLR+ SG Q + V+ CG L L L IAGS+ VR + A AW L L + A ++ GE SS
Sbjct: 372 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--GVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSS 498
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 2.100e-7 Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = 1
Query: 88 LRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDS--PLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSIL 429
LRCLVVL+DVW+A +V GF +VTT ++P +CT +++ L EA LL+ S P V K CG L LPL I G++ + R D A W ++++L
Sbjct: 358 LRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEM--LTNAEALELLKNASRATAAIPTNEGLK-VAKDCGFLPLPLAIVGAMGSSRADPDSAETWRGIHALL 471 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12314.1941.1 >prot_Ecto-sp13_S_contig12314.1941.1 ID=prot_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp MFCLGSLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEADVVAAASAback to top mRNA from alignment at Ecto-sp13_S_contig12314:2586..3806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12314.1941.1 ID=mRNA_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12314:2586..3806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12314:2586..3806- >mRNA_Ecto-sp13_S_contig12314.1941.1 ID=mRNA_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12314:2586..3806- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |