mRNA_Ecto-sp13_S_contig12314.1941.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12314.1941.1
Unique NamemRNA_Ecto-sp13_S_contig12314.1941.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 6.660e-98
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 1
Query:    4 FCLGSLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 501
            FCLG LLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEA+VVAAASAAGFDLVVTT FRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESS+CSENHRRGRSNA
Sbjct:  647 FCLGLLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSTCSENHRRGRSNA 812          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 1.250e-91
Identity = 149/151 (98.68%), Postives = 150/151 (99.34%), Query Frame = 1
Query:   49 AATWFTPYMSGLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 501
            AATWFTPYMSGLGLRCLVVLEDVWEA+VVAAASAAGFDLVVTT FRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA
Sbjct:  746 AATWFTPYMSGLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRLGESSSCSENHRRGRSNA 896          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.870e-9
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 1
Query:   79 GLGLRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAW 408
            G GL+CL V+++VWE +VV     AG  ++++T   +LV        ++V  L+  EA S+LR+ + L  +  LP  A  +I+ CG +A+ L   G L  VR RSD  AW
Sbjct:  276 GEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWE-GEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFGGRLSTVRGRSDRTAW 384          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.490e-8
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL 450
            LVVL+DVWE +VV A    GF ++VTT  R +V     C  L++G +  +EA  LL + SG   +    +      V+  CG L L L IAGSLP V+ +   A AW  L   L +  T++
Sbjct:  266 LVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRC--LELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTKVVTLCGRLPLVLAIAGSLPVVKGKGLTAGAWGKLIDELENVVTKM 384          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 4.680e-8
Identity = 48/125 (38.40%), Postives = 66/125 (52.80%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSAD------GVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL 450
            LVVL+DVWE +VV A    GF L++TT  R +V D     RL++G +  +EA  LLR+ SG      + P  D       V+  CG L L L IAGS+ AV+ +   A AW  L     + A ++
Sbjct:  174 LVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDP--AGRLELGDMTEEEALELLRKTSGT-----VDPGDDVRMKMTKVVALCGHLPLVLAIAGSMSAVKGKGLTAVAWEELAKEFENVAKKM 291          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.220e-8
Identity = 51/137 (37.23%), Postives = 67/137 (48.91%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLV--PDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGV-------IKACGALALPLTIAGSLPAVRCRS-DEAAWANLYSILSHKATRLGESSSCSEN 477
            LVVL+DVWE +VVAA    G  ++VTT  R +V  P       L++G +A DEA  LL + SG   Q       DGV       +  CG L L L IAGS+P V+ +   + AW  L     +  T + E    S N
Sbjct:  366 LVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGG----LLELGDMAEDEALELLWKTSGTVGQ-----PGDGVRTQMTKVVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRN 493          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.850e-8
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
            LVVL+DVWE +VV A    GF +++TT  R +V       RL+VG +  +EA  LLR+ SG   Q    +      V+  CG L L L IAGS+  V+ +   A AW  L   L + A ++   GE SS
Sbjct:  335 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVP--AGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVKGKGLTAVAWKELAENLENVAKKMRARGEQSS 461          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.540e-8
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
            LVVL+DVWE +VV A    GF +++TT  R +V       RL++G +  +EA  LLR+ SG   Q    +      V+  CG L L L IAGS+  VR +   A AW  L   L + A ++   GE SS
Sbjct:  389 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--GLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSS 515          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.680e-8
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1
Query:   97 LVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQA--PLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSILSHKATRL---GESSS 465
            LVVL+DVWE +VV A    GF +++TT  R +V       RL++G +  +EA  LLR+ SG   Q    +      V+  CG L L L IAGS+  VR +   A AW  L   L + A ++   GE SS
Sbjct:  372 LVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVV--GVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTKVVALCGHLPLVLAIAGSMSVVRGKGLTAVAWEELAKELENVAKKMRARGEQSS 498          
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.100e-7
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = 1
Query:   88 LRCLVVLEDVWEADVVAAASAAGFDLVVTTGFRDLVPDS--PLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIKACGALALPLTIAGSLPAVRCRSDEA-AWANLYSIL 429
            LRCLVVL+DVW+A +V      GF  +VTT    ++P     +CT +++  L   EA  LL+  S      P       V K CG L LPL I G++ + R   D A  W  ++++L
Sbjct:  358 LRCLVVLDDVWDAQIVPLFLCGGFHSLVTTRDLAVIPRDLQGVCTEVEM--LTNAEALELLKNASRATAAIPTNEGLK-VAKDCGFLPLPLAIVGAMGSSRADPDSAETWRGIHALL 471          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12314.1941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JQC7_9PHAE6.660e-9897.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK2_ECTSI1.250e-9198.68Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJ30_9PHAE2.870e-937.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU94_9PHAE2.490e-838.02NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FUD7_ECTSI4.680e-838.40NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI6.220e-837.23NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
A0A6H5KXS7_9PHAE7.850e-838.76NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI8.540e-838.76NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI8.680e-838.76NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LL58_ECTSI2.100e-735.90NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12314contigEcto-sp13_S_contig12314:2586..3806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score68.2
Seed ortholog evalue4.6e-09
Seed eggNOG ortholog2880.D7FZX2
Model size550
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size549
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.7548933-CDS-Ecto-sp13_S_contig12314:2585..28071681462655.7548933-CDS-Ecto-sp13_S_contig12314:2585..2807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12314 2586..2807 -
1681462655.7664678-CDS-Ecto-sp13_S_contig12314:3124..32661681462655.7664678-CDS-Ecto-sp13_S_contig12314:3124..3266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12314 3125..3266 -
1681462655.7759032-CDS-Ecto-sp13_S_contig12314:3621..38061681462655.7759032-CDS-Ecto-sp13_S_contig12314:3621..3806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12314 3622..3806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12314.1941.1prot_Ecto-sp13_S_contig12314.1941.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12314 2586..3806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12314.1941.1

>prot_Ecto-sp13_S_contig12314.1941.1 ID=prot_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
MFCLGSLLKAEATATAAATWFTPYMSGLGLRCLVVLEDVWEADVVAAASA
AGFDLVVTTGFRDLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPL
PPSADGVIKACGALALPLTIAGSLPAVRCRSDEAAWANLYSILSHKATRL
GESSSCSENHRRGRSNASTTSSAGGGGGASTSS
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mRNA from alignment at Ecto-sp13_S_contig12314:2586..3806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12314.1941.1 ID=mRNA_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12314:2586..3806- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCTTGGGCTCGCTCTTGAAGGCGGAAGCAACCGCTACCGCGGC GGCGACGTGGTTCACCCCCTACATGTCCGGGCTTGGGCTGCGGTGTCTGG TGGTGCTGGAAGATGTGTGGGAGGCGGACGTGGTGGCGGCCGCGAGCGCG GCGGGTTTCGACTTGGTCGTGACCACCGGGTTCAGGTACATCAAGCGGTA CCAGTGTCGTTGTTTTGTGTGTTGTGTCTGGGTCGCATCGACTTTTCATG TGATGATCAAACGACAAGTGTTTAGTGGTTACTTGAAAATAGCGATGTCG ATACCGCCGAGCGGAGGTTATCGATGACCCAGCTCTTTGTCGCAATCATG ATGATCTATCTCTCACCCCAATGGCACCATCATGAAAAACGTTGAAGCCT GACGATGCAGTCATGACAACCCATCTCATCATGATGAACTAACTCCAAAA AAACGGAAGCTTAGCACCGCAAGCACGACGATCTACGAAAGTATCTCACC ACAACAACTTGGGCGATACGAAAAAAAAAATGATTGGAAGGGACCTAGTA CCGGACTCACCACTCTGCACCCGTCTCGACGTGGGAGGGCTCGCGAGGGA CGAGGCGAGGTCTCTGCTCCGGCGTTGCAGCGGTCTGGCCTGGCAGGCGC CCCTGCCCCCCTCCGCGGATGGAGTCATCAAGGTTCGGCGGCGTTTCTTT TTGTTTGCTGTGGATGAAATCCCCGCCCTCCATGAGCTGTGTGCCTGCGT TTTTGTTTTGGTGGCCGTTGTTTTTGTTCTCGTTGTTGCCCGTTGCTATT GCTGTTTGTCGTGGGTATTGTTGCTGCGGCTGTCTGCTGTTGCTGCTGCT GTCGCTGTGGTTGGTGCGGCGTCGTCTCGAGTTGAAACCGCTCCGGCCCC CACCCTGTACCCCTCCTCCTCTAGTACACCTACTCGTATTCAACCCCCCT CGTGTCCACCGAACCAAATGCGCGCCGCGCATCAACAACCACCGCACAGG CGTGCGGGGCGCTGGCCCTCCCCCTGACGATCGCGGGCTCCCTTCCGGCT GTCCGCTGCCGGTCCGACGAGGCGGCGTGGGCGAACCTCTACTCGATCCT CTCCCACAAGGCCACCCGCCTGGGTGAGTCTTCAAGCTGCTCCGAAAACC ACCGCCGCGGAAGGAGTAACGCGTCTACCACCTCGTCCGCCGGCGGGGGG GGCGGCGCCTCGACGAGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12314:2586..3806-

>mRNA_Ecto-sp13_S_contig12314.1941.1 ID=mRNA_Ecto-sp13_S_contig12314.1941.1|Name=mRNA_Ecto-sp13_S_contig12314.1941.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12314:2586..3806- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGCTTGGGCTCGCTCTTGAAGGCGGAAGCAACCGCTACCGCGGC
GGCGACGTGGTTCACCCCCTACATGTCCGGGCTTGGGCTGCGGTGTCTGG
TGGTGCTGGAAGATGTGTGGGAGGCGGACGTGGTGGCGGCCGCGAGCGCG
GCGGGTTTCGACTTGGTCGTGACCACCGGGTTCAGGGACCTAGTACCGGA
CTCACCACTCTGCACCCGTCTCGACGTGGGAGGGCTCGCGAGGGACGAGG
CGAGGTCTCTGCTCCGGCGTTGCAGCGGTCTGGCCTGGCAGGCGCCCCTG
CCCCCCTCCGCGGATGGAGTCATCAAGGCGTGCGGGGCGCTGGCCCTCCC
CCTGACGATCGCGGGCTCCCTTCCGGCTGTCCGCTGCCGGTCCGACGAGG
CGGCGTGGGCGAACCTCTACTCGATCCTCTCCCACAAGGCCACCCGCCTG
GGTGAGTCTTCAAGCTGCTCCGAAAACCACCGCCGCGGAAGGAGTAACGC
GTCTACCACCTCGTCCGCCGGCGGGGGGGGCGGCGCCTCGACGAGCAGC
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