mRNA_Ecto-sp13_S_contig8064.19404.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8064.19404.1
Unique NamemRNA_Ecto-sp13_S_contig8064.19404.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 483 bits (1243), Expect = 6.450e-162
Identity = 261/310 (84.19%), Postives = 263/310 (84.84%), Query Frame = 2
Query:  443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGIGGGDGXXXXFXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGGAYQGQTTQAXXXXXXXGGQQGY 1372
            VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLP RAGGGMQGGAMQGGAGGMMXX VGGSGED+SARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGAS RKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWG+GGGD XXX F G X                                NGGGAYQGQ TQA       GGQQGY
Sbjct:  161 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPARAGGGMQGGAMQGGAGGMMXXAVGGSGEDVSARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASNRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGVGGGDXXXXGFGGQXQWGQQQQFGAPQGVQQAYGNGAYAGGAAAYGTNGGGAYQGQATQAAGGAGAWGGQQGY 470          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 460 bits (1184), Expect = 1.460e-154
Identity = 275/310 (88.71%), Postives = 277/310 (89.35%), Query Frame = 2
Query:  443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGIGGGDGXXXXFXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGGAYQGQTTQAXXXXXXXGGQQGY 1372
            VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGG MQGGAG   XXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFR+A NAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWG+GG D XXXX X XXXXXXXXXXXX             XXXXXX   NGG AYQGQTTQA       GGQQGY
Sbjct:   61 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGVMQGGAGXXXXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRYAVNAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGVGG-DXXXXXXXXXXXXXXXXXXXXPQGVQQAYGNGAYXXXXXXYGTNGG-AYQGQTTQAAGGAGAWGGQQGY 368          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A388KX58_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KX58_CHABU)

HSP 1 Score: 181 bits (460), Expect = 1.710e-47
Identity = 92/204 (45.10%), Postives = 128/204 (62.75%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
            AS+   ++K+FVRGL WET  Q+LR  F ++GEI E  V+ DK T KS+G+GF+TFK MD A  AL  P K IDGR+++CNLAA                         G +    GG G D S RK+++ GLS++T+TE+L  +F QFGE+E+  V  D+A+GKS+G+GFVT++    A  A++EP + +DGR  HC +AAEG
Sbjct:   67 ASKDPAHRKLFVRGLAWETTSQALRDAFAEFGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALREPSKKIDGRITVCNLAAA------------------------GTLGGSQGGGGGDQSQRKLYIGGLSYETSTETLLNIFGQFGEIEEGSVAYDKATGKSRGFGFVTYKTVEGANRALSEPTRTIDGRTVHCKLAAEG 246          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA)

HSP 1 Score: 167 bits (422), Expect = 4.530e-42
Identity = 86/204 (42.16%), Postives = 126/204 (61.76%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
            AS+  V++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+ P K IDGR+++CNLA+  S+                            G S  D + RK+++ GLS+DTT+++L  +FSQ+GE+E+  +  D+ + KS+G+ FVTF+    A  A+ +  K ++GR     +AAEG
Sbjct:   87 ASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKEPSKNIDGRITVCNLASAGSTS---------------------------GTSSTDQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAKRAIEDSNKSIEGRHVTVKLAAEG 263          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER)

HSP 1 Score: 166 bits (420), Expect = 8.010e-42
Identity = 90/204 (44.12%), Postives = 122/204 (59.80%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
            AS+   ++K+FVRGL WET+ Q+L A FEQYGEI E  V+MDK T KS+G+GFVTFK MD A  AL+ P K IDGR+++ NLAA  SS                             G   D++ RK+++ GLS+DT  E L  +FS++GE+E+  V  D+ + KS+G+ FVTF+    A  A+ EP K +DGR     +AAEG
Sbjct:   69 ASKDPAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITISNLAASSSSP----------------------------GQNADLAQRKLYIGGLSYDTPNEKLLEVFSKYGEIEEGSVAYDKKTNKSRGFAFVTFKTVEAAKRALKEPNKNIDGRGVTVKLAAEG 244          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: D8QPR6_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPR6_SELML)

HSP 1 Score: 164 bits (416), Expect = 1.680e-41
Identity = 89/222 (40.09%), Postives = 129/222 (58.11%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG-----ASGRKNQNYGGPQ 1078
            AS+   ++K+FVRGL WET  Q+LR  F+ YGEI E  V+ DK T KS+G+GF+TFK MD A  AL+ P K IDGR+++CNLA++ SS                            G    D + RK+++ GLS++T+ E+L  +FSQ+GE+E+  V  D+ + KS+G+ F+T++    A  A+ +P K ++GR     +AAEG      S    QN GGPQ
Sbjct:   64 ASKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGSS---------------------------AGAGSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRGFAFITYKSVEAARKAIDDPNKTIEGRHVIVKLAAEGQKEKAVSQSSAQNQGGPQ 258          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2D4CE34_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE34_PYTIN)

HSP 1 Score: 166 bits (419), Expect = 1.720e-41
Identity = 102/232 (43.97%), Postives = 136/232 (58.62%), Query Frame = 2
Query:  410 ECSAARASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALR----------SSQPLPQR-AGGGMQGGAMQGGAGGMMXXXVGGS---------GEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGAS 1045
            E  AA ++ V  ++K+FVRGL WET  + LR  F  +G++ EA V+ DK + KS+GYGFVTF  M GA  A+E     IDGRV+ CNLAA+R          S Q  P R +   +Q   M        XX    S         G D S RK+FVRGL+WDT+ E+LR +F  FGEL +  V  +R +GKSKG+GFVT+R  A+A  A+ +P K +DGR  +CN+A+ G S
Sbjct:   80 EIKAAASTDV-AHRKVFVRGLAWETTSERLREAFSVFGDVDEAAVIYDKASGKSRGYGFVTFIDMHGAEQAVEKQTLEIDGRVTTCNLAAVRTQQSDEHASHSQQQTPSRNSQPQLQPSVMMXXXXXXXXXMASVSTPPGQGFRGGNDESERKLFVRGLAWDTSDETLRAVFQVFGELVEASVVRERKTGKSKGFGFVTYRHRASAELALQQPAKMIDGRQVNCNLASLGRS 310          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A1Y1I415_KLENI (RNA binding domain protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I415_KLENI)

HSP 1 Score: 166 bits (421), Expect = 2.270e-41
Identity = 92/209 (44.02%), Postives = 126/209 (60.29%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRK 1054
            AS+    +K+FVRGLPWET  + L A +E++G+I EA V++DK++ KSKG+GFVTF+ +D A  AL NP+K I  R    NLAAL SS    QR                           D+S RK++V GL++DTT E+L  +F +FGE+E+  + T+R +GKS+G+ FVTFR A  A AA AEP K +D R     +AAEG   R+
Sbjct:   62 ASKDPATRKLFVRGLPWETTTEELTAAYEEFGDIDEAAVIVDKISGKSKGFGFVTFRHIDSAQKALRNPKKQIRDRTVHANLAALGSSAT--QR------------------------DNNDVSQRKVYVGGLNYDTTNETLLEVFGKFGEIEEGSIATERTTGKSRGFAFVTFRTAEGAQAACAEPVKHIDTRNVQVKLAAEGRQQRQ 244          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A1W0A0X4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X4_9STRA)

HSP 1 Score: 161 bits (407), Expect = 2.810e-40
Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = 2
Query:  443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAAL-RSSQPLPQRAGGGMQGGAMQGGAGGMMXXX--VGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAE 1036
            V++KIF+RGLPW+     LR  F ++G + EA V++DK T KSKG+GF+ F  M+ A   L+     I+GR   C LAA   + +P PQ +   ++  A    A  ++     VG  G++   RK+FVRGL WDT  ESL   F ++G++ED  VT DR +GKSKGYGF+ FR    A  A+A+P K +DGR THCN+A +
Sbjct:   75 VHRKIFIRGLPWDLTSNGLREYFNKFGPVDEAIVIVDKSTGKSKGFGFLVFPDMETADIVLKAQPHEIEGRKCPCKLAATPHTEEPTPQPSNR-IKNSANTSSAANILQPQQDVGPPGDEAD-RKLFVRGLHWDTHAESLNAEFKKYGDIEDVTVTKDRQTGKSKGYGFIVFRHQMGARRALAQPTKVIDGRSTHCNLAIQ 273          
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2R6X2I3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2I3_MARPO)

HSP 1 Score: 160 bits (406), Expect = 4.760e-40
Identity = 84/204 (41.18%), Postives = 124/204 (60.78%), Query Frame = 2
Query:  428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
            AS+   ++K+FVRGL WET  Q+LR  FEQYGEI E  V+ DK T KS+G+GF+TFK MD A  AL+ P K IDGR+++CNLA+  S+                              +  D + RK+++ GLS++T++++L T+FSQ+GE+E+  V  D+ + KS+G+ FVTF+    A  A+ +P K ++GR     +AAEG
Sbjct:   74 ASKDPAHRKLFVRGLAWETTSQALRDAFEQYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKNIDGRITVCNLASSGSTT-----------------------------TATDQAQRKLYIGGLSYETSSDTLLTIFSQYGEIEEGAVAYDKNTNKSRGFAFVTFKTLEAAKRAMDDPNKNIEGRHVIVKLAAEG 248          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN41_ECTSI6.450e-16284.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW4_9PHAE1.460e-15488.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388KX58_CHABU1.710e-4745.10Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
A0A2K1L9M1_PHYPA4.530e-4242.16Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A0C9QX59_9SPER8.010e-4244.12TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_... [more]
D8QPR6_SELML1.680e-4140.09Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A2D4CE34_PYTIN1.720e-4143.97Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A1Y1I415_KLENI2.270e-4144.02RNA binding domain protein n=1 Tax=Klebsormidium n... [more]
A0A1W0A0X4_9STRA2.810e-4043.78Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A2R6X2I3_MARPO4.760e-4041.18Uncharacterized protein n=2 Tax=Marchantia polymor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8064contigEcto-sp13_S_contig8064:2..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score122.1
Seed ortholog evalue4.1e-25
Seed eggNOG ortholog157072.XP_008869796.1
Model size2059
KEGG koko:K12741
KEGG Pathwayko03040,map03040
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0001101,GO:0001837,GO:0002237,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005730,GO:0005737,GO:0005829,GO:0005849,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0007623,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009605,GO:0009607,GO:0009617,GO:0009692,GO:0009693,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010150,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0010817,GO:0016070,GO:0016071,GO:0017091,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030154,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031330,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042221,GO:0042445,GO:0042446,GO:0042752,GO:0042789,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043449,GO:0043450,GO:0043487,GO:0043488,GO:0043489,GO:0043565,GO:0043631,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045292,GO:0045727,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0048255,GO:0048366,GO:0048367,GO:0048511,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048762,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0051972,GO:0051973,GO:0060255,GO:0060485,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0070935,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071495,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090575,GO:0090693,GO:0097159,GO:0097167,GO:0097305,GO:0097306,GO:0097659,GO:0099402,GO:1900673,GO:1900674,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902369,GO:1902373,GO:1902679,GO:1902680,GO:1903311,GO:1903312,GO:1903506,GO:1903507,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000113,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons7
EggNOG free text desc.RNA binding
EggNOG OGsKOG0118@1,KOG0118@2759
Ec32 ortholog descriptionUncharacterized protein
Ec32 orthologEc-06_008310.1
Cds size828
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8064.19404.1prot_Ecto-sp13_S_contig8064.19404.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8064 974..2779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.716474-UTR-Ecto-sp13_S_contig8064:1..5361681464079.716474-UTR-Ecto-sp13_S_contig8064:1..536Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8064 2..536 +
1681464079.729015-UTR-Ecto-sp13_S_contig8064:961..9731681464079.729015-UTR-Ecto-sp13_S_contig8064:961..973Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8064 962..973 +
1681464079.8082144-UTR-Ecto-sp13_S_contig8064:2779..34631681464079.8082144-UTR-Ecto-sp13_S_contig8064:2779..3463Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8064 2780..3463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464079.738205-CDS-Ecto-sp13_S_contig8064:973..10751681464079.738205-CDS-Ecto-sp13_S_contig8064:973..1075Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 974..1075 +
1681464079.7483034-CDS-Ecto-sp13_S_contig8064:1347..15291681464079.7483034-CDS-Ecto-sp13_S_contig8064:1347..1529Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 1348..1529 +
1681464079.7585142-CDS-Ecto-sp13_S_contig8064:1677..18491681464079.7585142-CDS-Ecto-sp13_S_contig8064:1677..1849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 1678..1849 +
1681464079.7690744-CDS-Ecto-sp13_S_contig8064:2090..22171681464079.7690744-CDS-Ecto-sp13_S_contig8064:2090..2217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 2091..2217 +
1681464079.7797773-CDS-Ecto-sp13_S_contig8064:2361..24651681464079.7797773-CDS-Ecto-sp13_S_contig8064:2361..2465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 2362..2465 +
1681464079.7931094-CDS-Ecto-sp13_S_contig8064:2638..27791681464079.7931094-CDS-Ecto-sp13_S_contig8064:2638..2779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8064 2639..2779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8064.19404.1

>prot_Ecto-sp13_S_contig8064.19404.1 ID=prot_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQP
LPQRAGGGMQGGAMQGGAGGMMGGAVGGSGEDISARKIFVRGLSWDTTTE
SLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQ
LDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQ
WGIGGGDGQAQGFGGQGQWGQQQQFGAPQGVQQAYGNGAYAGGAAAYGTN
GGGAYQGQTTQAAGGAGAWGGQQGY*
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mRNA from alignment at Ecto-sp13_S_contig8064:2..3463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8064.19404.1 ID=mRNA_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8064:2..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCTTTGCTGGCGGGATATTCAATCCTGACTTGGTTTCCTCGGTCTCTT AAAGTTGATGCCGGAACGAAAAAGTCCCATCATTTTATGAGATTTTCCAC AACTGCTGTCATGTCAGCACTGGAACTGTGTAGGGGTGAACTTCAAGTAC AGCATGTTGCAGTACTCATAAAATAAAGTCCACCTTCATTTCAGTGTAGG GACGCTCCTAAATATTTGAATGCTGAAAGACAAAAAAAGACAGTGAACAT TCAAAATACACCTTTTCTTGCAATTTGGTTCCACCCGACCGTCACACAAG CCGCTGCTCGAATTTGATGGGTGCAGTGCAGATGTGAGGTTGTCTCGGCG CTTCAGCTTTAGGCACCTATTCATACATCACACTTGTACTTGCTGGAGCA TCTTAGGCTGAGTGCTCCGCTGCACGTGCTTCTCGTGTTTAGGTGAACAA GAAGATTTTCGTTCGCGGCTTACCGTGGGAAACCAACGACCAGTCCCTTC GTGCAGTCTTCGAGCAATACGGAGAGATCGCCGAGGTAGGCCCCTCTGCA TGAGAAACGTGGTCCCAATAGCATGCATCTATATATTGGGCGAGTCGGCC CCGCCAAGGGCTCGTACTTTTTTTGTCCATGCAGTCAGCGATTGTCGGCC ATCTCCCCAATCTTGCGATGTTTTTGCATTCCCCTGGATCAGAGTTTTAG AATTTGGAATAGCAGCTCACCTGTCATTCATCGCAAGGCACTTCCTCCCT GTCTTCGTTTCGGCCCACCTGAACGACGCTGGCGCTTCCCCTCGTTGTGA TTGTTCTTGCATCAAAACATACGGCTCTCGGCCAGTTGTATTCGCTGTTT ATTGTGTCACATCGGGTAGTGTCAAAGACTGAATATAATTCTCTCACCTT TGAATAGCTGGTTGACTCGGACCCTTGCTTTTTCCGCCTGCTCGGTGACT TGCGCTCTAGGCCACCGTGGTGATGGACAAGATGACACAGAAATCGAAGG GATACGGCTTTGTCACCTTCAAGAGCATGGACGGCGCCCATGCCGCTCTG GAAAATCCTGAGAAGATGATCGACGTGAGGAACTGGAGTCGACCGGTTGT TGACACGTCCACGTGCTTGAGTCGACCGTTTTCTCTTCCCCACTCTCGTG TAATGCTTTTTGATCCCGTTAGGACGCGCGATTCATGTTGGTGTCATTGG GCTAGACGCACAGCCGCTTTGTATCCTTGATTCGAGTACTGCTGCAGCCT ACATCGCGCGTGCAAGCAACCGCCTGTTTGGGCCGAAGCTGTTCGACCTT ATCAGGCATTTCTCGTTTCCCTTGGCATCACATGCTCTCGTTGCAGGGGC GGGTGAGCTTGTGCAACTTGGCGGCCCTCCGCTCCTCTCAACCGCTGCCT CAAAGGGCTGGTGGCGGCATGCAAGGCGGCGCTATGCAGGGTGGAGCGGG TGGCATGATGGGTGGCGCCGTGGGTGGATCAGGAGAGGACATCAGTGCCA GGAAGATCTTCGTCAGAGGGCTCTCCTGGTGGGTACTCGAACATAGTCGA TGGAAGCTTACCACTTTTCACTTTTTAATACTTGGGTGCGGAAGGATCGC TACGTTGCTATCTTGTGCATACAGCACGCCCTTTCCGAAGTCTTTCTCAA ACACGTTTTGCTGTCTCGGTTAACAGGGACACTACGACGGAGTCTCTGCG CACGATGTTCTCTCAATTCGGCGAACTGGAGGATTGTGTGGTGACAACTG ACCGCGCGTCGGGCAAGTCCAAGGGATACGGCTTTGTGACCTTCCGCTTT GCCGCCAACGCTGCTGCTGCCGTTGCTGAGCCGGAGAAGCAGCTTGATGT GAGTCCGAAATGACACACGCTAGGGATCAAGTCAAAGGGCAACAACTATG CGTGAGGGAAGCAGTATGTTAAAGTTGGCCAATGTCAACCACAAGGGTTA ATCTATTTCGCCTTGTATTCAGCTTTCGCCTGTCTTGCGTGCTGGCGTCA AACAGGCTTCTTGAGTTCCCTGTAGTATTTTTCCACAGGACCGACGGTTT ATTTGTTATCGCTGCGTCGCTGCTTTGCTGGGGTTGCAGGGTCGCCTGAC CCACTGCAACATCGCAGCCGAGGGAGCCTCGGGTAGGAAAAACCAAAACT ACGGTGGACCTCAGGCCGGTCAGCACTGGGGCATGATGGGTCAGCAGCAG CAGTACCCTGCTCAAGGTACGCGGTTTCGTGTGCTCCTGCCGACATGACA TGGTAATCCACCTTTCTAAATATTGTATATAGTCAGACACGTCTAAAGCC CGTCTTTTGTTCCAACCTTGACCACACAACACAATTTATACGCTTGCGCC ATTTTCACAGGTCAAGGCTCTGGTCAGTGGGGTATTGGTGGCGGTGATGG TCAAGCCCAAGGCTTCGGCGGTCAGGGACAGTGGGGGCAGCAGCAGCAGT TCGGCGCACCTCAGGTACGTTCGTTCATCACTTACCCCAACGCCAGCTGT TTACCCGTACCATGGCGCCAAACGAAAACTGGTAAGGTATGCTGCTGATA ACTGCACCCTCCACCCCGCTTAGTTACTTCGAATACATCCGGACTGTTGA GAATTGACGATGTTGGTACCCGCTTCCGTCGGTACAGGGAGTGCAGCAAG CGTATGGCAACGGTGCGTATGCAGGAGGCGCTGCTGCGTACGGCACTAAC GGTGGTGGTGCATACCAAGGCCAGACTACCCAGGCTGCCGGAGGAGCGGG TGCATGGGGCGGACAGCAGGGATACTGATCCTCCCTTTCGATGTGCAAAA GCCGATGATTCCTTTTCAGATTATTTGCTTCAATTGGTGGAAAGTAGCGT GGACAAAAAATATGGTGGTTTCAATGGAGGAATATGGTCTCAGAGCTTGT ACCGTCTTCCAAAGTCTAAGCCCAAGGCACTCAGTCAGAGGATTAACGAC ACAAAGGACCCGGCGACGGAAGAGGGAGGACCTATGGTATTGTGAGTTTG CTGTAGGACAGGAGGACCTATGGTATTGTGAGCTTGCGTTAGGACAGAGT TCGGCTCAGCGGCCGTTTTGATTGCTTGATTCACGCCAGGGAGAGGTAGA CCCAACATTTGGAGCCTGCATCCGTCCGCTCCCTCGAGCTCCACAGCTGT TCCTTTACCTATTACACATGTAATCGGCTACAGTTGCAAGCCACGAATAT AATTGGACATGAAATGGGTTTTGTAACGGAGTGGAGAGCTGTGCTAATAT CGATATAAAGAGAATATTTGTGTCGGTCATTCTGTGGGTGAAAACGAACG CATCCCATGAAATGTGTGCACAACAACACACGTATCGACACCTAGCACAC ATGATATCACTTCGAAGTCGCATGATGACTCGGGTGTCTTGCAATGGTTT GGAGGAATCACAGTTATTGTGCGTCAAGATCACAATTAACCGATTCCTTT TCTGGAAAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8064:2..3463+

>mRNA_Ecto-sp13_S_contig8064.19404.1 ID=mRNA_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8064:2..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGATGACACAGAAATCGAAGGGATACGGCTTTGTCACCTTCAA
GAGCATGGACGGCGCCCATGCCGCTCTGGAAAATCCTGAGAAGATGATCG
ACGGGCGGGTGAGCTTGTGCAACTTGGCGGCCCTCCGCTCCTCTCAACCG
CTGCCTCAAAGGGCTGGTGGCGGCATGCAAGGCGGCGCTATGCAGGGTGG
AGCGGGTGGCATGATGGGTGGCGCCGTGGGTGGATCAGGAGAGGACATCA
GTGCCAGGAAGATCTTCGTCAGAGGGCTCTCCTGGGACACTACGACGGAG
TCTCTGCGCACGATGTTCTCTCAATTCGGCGAACTGGAGGATTGTGTGGT
GACAACTGACCGCGCGTCGGGCAAGTCCAAGGGATACGGCTTTGTGACCT
TCCGCTTTGCCGCCAACGCTGCTGCTGCCGTTGCTGAGCCGGAGAAGCAG
CTTGATGGTCGCCTGACCCACTGCAACATCGCAGCCGAGGGAGCCTCGGG
TAGGAAAAACCAAAACTACGGTGGACCTCAGGCCGGTCAGCACTGGGGCA
TGATGGGTCAGCAGCAGCAGTACCCTGCTCAAGGTCAAGGCTCTGGTCAG
TGGGGTATTGGTGGCGGTGATGGTCAAGCCCAAGGCTTCGGCGGTCAGGG
ACAGTGGGGGCAGCAGCAGCAGTTCGGCGCACCTCAGGGAGTGCAGCAAG
CGTATGGCAACGGTGCGTATGCAGGAGGCGCTGCTGCGTACGGCACTAAC
GGTGGTGGTGCATACCAAGGCCAGACTACCCAGGCTGCCGGAGGAGCGGG
TGCATGGGGCGGACAGCAGGGATACTGA
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