mRNA_Ecto-sp13_S_contig8064.19404.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI) HSP 1 Score: 483 bits (1243), Expect = 6.450e-162 Identity = 261/310 (84.19%), Postives = 263/310 (84.84%), Query Frame = 2
Query: 443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGIGGGDGXXXXFXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGGAYQGQTTQAXXXXXXXGGQQGY 1372
VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLP RAGGGMQGGAMQGGAGGMMXX VGGSGED+SARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGAS RKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWG+GGGD XXX F G X NGGGAYQGQ TQA GGQQGY
Sbjct: 161 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPARAGGGMQGGAMQGGAGGMMXXAVGGSGEDVSARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASNRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGVGGGDXXXXGFGGQXQWGQQQQFGAPQGVQQAYGNGAYAGGAAAYGTNGGGAYQGQATQAAGGAGAWGGQQGY 470
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 1.460e-154 Identity = 275/310 (88.71%), Postives = 277/310 (89.35%), Query Frame = 2
Query: 443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGIGGGDGXXXXFXGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGGGAYQGQTTQAXXXXXXXGGQQGY 1372
VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGG MQGGAG XXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFR+A NAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWG+GG D XXXX X XXXXXXXXXXXX XXXXXX NGG AYQGQTTQA GGQQGY
Sbjct: 61 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGVMQGGAGXXXXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRYAVNAAAAVAEPEKQLDGRLTHCNIAAEGASGRKNQNYGGPQAGQHWGMMGQQQQYPAQGQGSGQWGVGG-DXXXXXXXXXXXXXXXXXXXXPQGVQQAYGNGAYXXXXXXYGTNGG-AYQGQTTQAAGGAGAWGGQQGY 368
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A388KX58_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KX58_CHABU) HSP 1 Score: 181 bits (460), Expect = 1.710e-47 Identity = 92/204 (45.10%), Postives = 128/204 (62.75%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
AS+ ++K+FVRGL WET Q+LR F ++GEI E V+ DK T KS+G+GF+TFK MD A AL P K IDGR+++CNLAA G + GG G D S RK+++ GLS++T+TE+L +F QFGE+E+ V D+A+GKS+G+GFVT++ A A++EP + +DGR HC +AAEG
Sbjct: 67 ASKDPAHRKLFVRGLAWETTSQALRDAFAEFGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALREPSKKIDGRITVCNLAAA------------------------GTLGGSQGGGGGDQSQRKLYIGGLSYETSTETLLNIFGQFGEIEEGSVAYDKATGKSRGFGFVTYKTVEGANRALSEPTRTIDGRTVHCKLAAEG 246
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA) HSP 1 Score: 167 bits (422), Expect = 4.530e-42 Identity = 86/204 (42.16%), Postives = 126/204 (61.76%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
AS+ V++K+FVRGL WET+ +LR FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+ P K IDGR+++CNLA+ S+ G S D + RK+++ GLS+DTT+++L +FSQ+GE+E+ + D+ + KS+G+ FVTF+ A A+ + K ++GR +AAEG
Sbjct: 87 ASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKEPSKNIDGRITVCNLASAGSTS---------------------------GTSSTDQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAKRAIEDSNKSIEGRHVTVKLAAEG 263
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER) HSP 1 Score: 166 bits (420), Expect = 8.010e-42 Identity = 90/204 (44.12%), Postives = 122/204 (59.80%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
AS+ ++K+FVRGL WET+ Q+L A FEQYGEI E V+MDK T KS+G+GFVTFK MD A AL+ P K IDGR+++ NLAA SS G D++ RK+++ GLS+DT E L +FS++GE+E+ V D+ + KS+G+ FVTF+ A A+ EP K +DGR +AAEG
Sbjct: 69 ASKDPAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITISNLAASSSSP----------------------------GQNADLAQRKLYIGGLSYDTPNEKLLEVFSKYGEIEEGSVAYDKKTNKSRGFAFVTFKTVEAAKRALKEPNKNIDGRGVTVKLAAEG 244
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: D8QPR6_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPR6_SELML) HSP 1 Score: 164 bits (416), Expect = 1.680e-41 Identity = 89/222 (40.09%), Postives = 129/222 (58.11%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG-----ASGRKNQNYGGPQ 1078
AS+ ++K+FVRGL WET Q+LR F+ YGEI E V+ DK T KS+G+GF+TFK MD A AL+ P K IDGR+++CNLA++ SS G D + RK+++ GLS++T+ E+L +FSQ+GE+E+ V D+ + KS+G+ F+T++ A A+ +P K ++GR +AAEG S QN GGPQ
Sbjct: 64 ASKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGSS---------------------------AGAGSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRGFAFITYKSVEAARKAIDDPNKTIEGRHVIVKLAAEGQKEKAVSQSSAQNQGGPQ 258
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2D4CE34_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE34_PYTIN) HSP 1 Score: 166 bits (419), Expect = 1.720e-41 Identity = 102/232 (43.97%), Postives = 136/232 (58.62%), Query Frame = 2
Query: 410 ECSAARASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALR----------SSQPLPQR-AGGGMQGGAMQGGAGGMMXXXVGGS---------GEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGAS 1045
E AA ++ V ++K+FVRGL WET + LR F +G++ EA V+ DK + KS+GYGFVTF M GA A+E IDGRV+ CNLAA+R S Q P R + +Q M XX S G D S RK+FVRGL+WDT+ E+LR +F FGEL + V +R +GKSKG+GFVT+R A+A A+ +P K +DGR +CN+A+ G S
Sbjct: 80 EIKAAASTDV-AHRKVFVRGLAWETTSERLREAFSVFGDVDEAAVIYDKASGKSRGYGFVTFIDMHGAEQAVEKQTLEIDGRVTTCNLAAVRTQQSDEHASHSQQQTPSRNSQPQLQPSVMMXXXXXXXXXMASVSTPPGQGFRGGNDESERKLFVRGLAWDTSDETLRAVFQVFGELVEASVVRERKTGKSKGFGFVTYRHRASAELALQQPAKMIDGRQVNCNLASLGRS 310
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A1Y1I415_KLENI (RNA binding domain protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I415_KLENI) HSP 1 Score: 166 bits (421), Expect = 2.270e-41 Identity = 92/209 (44.02%), Postives = 126/209 (60.29%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASGRK 1054
AS+ +K+FVRGLPWET + L A +E++G+I EA V++DK++ KSKG+GFVTF+ +D A AL NP+K I R NLAAL SS QR D+S RK++V GL++DTT E+L +F +FGE+E+ + T+R +GKS+G+ FVTFR A A AA AEP K +D R +AAEG R+
Sbjct: 62 ASKDPATRKLFVRGLPWETTTEELTAAYEEFGDIDEAAVIVDKISGKSKGFGFVTFRHIDSAQKALRNPKKQIRDRTVHANLAALGSSAT--QR------------------------DNNDVSQRKVYVGGLNYDTTNETLLEVFGKFGEIEEGSIATERTTGKSRGFAFVTFRTAEGAQAACAEPVKHIDTRNVQVKLAAEGRQQRQ 244
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A1W0A0X4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0X4_9STRA) HSP 1 Score: 161 bits (407), Expect = 2.810e-40 Identity = 88/201 (43.78%), Postives = 123/201 (61.19%), Query Frame = 2
Query: 443 VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAAL-RSSQPLPQRAGGGMQGGAMQGGAGGMMXXX--VGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAE 1036
V++KIF+RGLPW+ LR F ++G + EA V++DK T KSKG+GF+ F M+ A L+ I+GR C LAA + +P PQ + ++ A A ++ VG G++ RK+FVRGL WDT ESL F ++G++ED VT DR +GKSKGYGF+ FR A A+A+P K +DGR THCN+A +
Sbjct: 75 VHRKIFIRGLPWDLTSNGLREYFNKFGPVDEAIVIVDKSTGKSKGFGFLVFPDMETADIVLKAQPHEIEGRKCPCKLAATPHTEEPTPQPSNR-IKNSANTSSAANILQPQQDVGPPGDEAD-RKLFVRGLHWDTHAESLNAEFKKYGDIEDVTVTKDRQTGKSKGYGFIVFRHQMGARRALAQPTKVIDGRSTHCNLAIQ 273
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Match: A0A2R6X2I3_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X2I3_MARPO) HSP 1 Score: 160 bits (406), Expect = 4.760e-40 Identity = 84/204 (41.18%), Postives = 124/204 (60.78%), Query Frame = 2
Query: 428 ASRV*VNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGAMQGGAGGMMXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEG 1039
AS+ ++K+FVRGL WET Q+LR FEQYGEI E V+ DK T KS+G+GF+TFK MD A AL+ P K IDGR+++CNLA+ S+ + D + RK+++ GLS++T++++L T+FSQ+GE+E+ V D+ + KS+G+ FVTF+ A A+ +P K ++GR +AAEG
Sbjct: 74 ASKDPAHRKLFVRGLAWETTSQALRDAFEQYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKNIDGRITVCNLASSGSTT-----------------------------TATDQAQRKLYIGGLSYETSSDTLLTIFSQYGEIEEGAVAYDKNTNKSRGFAFVTFKTLEAAKRAMDDPNKNIEGRHVIVKLAAEG 248 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8064.19404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8064.19404.1 >prot_Ecto-sp13_S_contig8064.19404.1 ID=prot_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp MDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPback to top mRNA from alignment at Ecto-sp13_S_contig8064:2..3463+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8064.19404.1 ID=mRNA_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8064:2..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8064:2..3463+ >mRNA_Ecto-sp13_S_contig8064.19404.1 ID=mRNA_Ecto-sp13_S_contig8064.19404.1|Name=mRNA_Ecto-sp13_S_contig8064.19404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8064:2..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |