mRNA_Ecto-sp13_S_contig80555.19392.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 2.120e-15 Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1
Query: 46 ILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
++ GT+QGWQD+STWSRGQAWAIYGFTMV RYLKEQRFL
Sbjct: 157 LVDKGTYQGWQDDSTWSRGQAWAIYGFTMVYRYLKEQRFL 196
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: D7FUK3_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK3_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 2.530e-15 Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query: 58 GTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
GT+QGWQD+STWSRGQAWAIYGFTMV RYL EQRFL
Sbjct: 6 GTYQGWQDDSTWSRGQAWAIYGFTMVHRYLTEQRFL 41
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: A0A6H5JQR3_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR3_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.160e-13 Identity = 30/36 (83.33%), Postives = 34/36 (94.44%), Query Frame = 1
Query: 58 GTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
G +QGWQD+STWSRGQAWA+YGFTMV RYLK+QRFL
Sbjct: 118 GAYQGWQDDSTWSRGQAWAMYGFTMVHRYLKKQRFL 153
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.690e-13 Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1
Query: 58 GTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
GT+QGWQD+STWSRGQAWA+YGF MV RYLK++RFL
Sbjct: 161 GTYQGWQDDSTWSRGQAWAVYGFAMVHRYLKDERFL 196
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI) HSP 1 Score: 70.9 bits (172), Expect = 5.870e-13 Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query: 46 ILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
++ GT+QGWQD+STWSRGQAWAIYGF MV RYL++ RFL
Sbjct: 215 LVDKGTYQGWQDDSTWSRGQAWAIYGFIMVHRYLQKPRFL 254
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: UPI00197E02EF (Glycoside hydrolase family 88 protein n=4 Tax=Paenibacillus TaxID=44249 RepID=UPI00197E02EF) HSP 1 Score: 65.5 bits (158), Expect = 4.390e-11 Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 7 SDHTLYHRHILLHILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
S HT Y + + + GT QG+QD STW+RGQAW +YGF + RYLKE RFL
Sbjct: 196 SYHTFYFDQLTGNAIRGGTGQGFQDGSTWTRGQAWGVYGFALAYRYLKEPRFL 248
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: A0A1R1ANP5_9BACL (Glucuronyl hydrolase n=5 Tax=Bacillales TaxID=1385 RepID=A0A1R1ANP5_9BACL) HSP 1 Score: 65.1 bits (157), Expect = 5.950e-11 Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 1 RYSDHTLYHRHILLHILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
R S HT Y H L GTHQG++D STW+RGQAW IYGF + RY K+ FL
Sbjct: 190 RSSYHTFYFDPKTGHALRGGTHQGYEDGSTWTRGQAWGIYGFALAYRYTKDAAFL 244
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: UPI001C0FA9C8 (glycoside hydrolase family 88 protein n=1 Tax=unclassified Paenibacillus TaxID=185978 RepID=UPI001C0FA9C8) HSP 1 Score: 64.7 bits (156), Expect = 8.170e-11 Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 7 SDHTLYHRHILLHILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
S HT Y H L GTHQG++D STW+RGQAW IYGF + RY K+ FL
Sbjct: 190 SYHTFYFDPSTGHALRGGTHQGYEDGSTWTRGQAWGIYGFALAYRYTKDAAFL 242
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: F0SAJ8_PSESL (Glycosyl hydrolase family 88 n=1 Tax=Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / CCUG 39354 / LMG 10337 / NBRC 100064 / NCIMB 13643) TaxID=762903 RepID=F0SAJ8_PSESL) HSP 1 Score: 64.7 bits (156), Expect = 8.400e-11 Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 46 ILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
+L THQG+ DES W+RGQAWAIYG+TM RY K+QR+L
Sbjct: 235 VLQRNTHQGYSDESAWARGQAWAIYGYTMCYRYTKDQRYL 274
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Match: A0A6C0NY43_9BACL (Glucuronyl hydrolase n=1 Tax=Paenibacillus rhizovicinus TaxID=2704463 RepID=A0A6C0NY43_9BACL) HSP 1 Score: 64.3 bits (155), Expect = 1.120e-10 Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1
Query: 7 SDHTLYHRHILLHILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKEQRFL 165
S HT Y H + GTHQG+QD STW+RGQAW IYGF + RY +E FL
Sbjct: 192 SYHTFYFDPDTGHAIRGGTHQGFQDGSTWTRGQAWGIYGFALAYRYFQEPAFL 244 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80555.19392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig80555.19392.1 >prot_Ecto-sp13_S_contig80555.19392.1 ID=prot_Ecto-sp13_S_contig80555.19392.1|Name=mRNA_Ecto-sp13_S_contig80555.19392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp RYSDHTLYHRHILLHILSAGTHQGWQDESTWSRGQAWAIYGFTMVRRYLKback to top mRNA from alignment at Ecto-sp13_S_contig80555:2..166- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig80555.19392.1 ID=mRNA_Ecto-sp13_S_contig80555.19392.1|Name=mRNA_Ecto-sp13_S_contig80555.19392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80555:2..166- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80555:2..166- >mRNA_Ecto-sp13_S_contig80555.19392.1 ID=mRNA_Ecto-sp13_S_contig80555.19392.1|Name=mRNA_Ecto-sp13_S_contig80555.19392.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80555:2..166- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |