mRNA_Ecto-sp13_S_contig805.19383.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: D7FYG0_ECTSI (Glutamyl-tRNA(Gln) amidotransferase, B subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG0_ECTSI) HSP 1 Score: 151 bits (381), Expect = 4.970e-42 Identity = 77/92 (83.70%), Postives = 79/92 (85.87%), Query Frame = 2
Query: 374 LLQKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAVGW--DPGDFCEWLIGDIAGSLNRCRNVSSVCRRMGAAVPVFRHS 643
LLQKW SELCE PVGKRER Q EL LSEEDAAALSDE VAFYFEEAVG DPG+FC+WLIGDI GSLNR RNVSSVCRRMGAAVPVFR S
Sbjct: 139 LLQKWRSELCESPVGKRERYQSELGLSEEDAAALSDERSVAFYFEEAVGAGSDPGEFCKWLIGDITGSLNRWRNVSSVCRRMGAAVPVFRKS 230
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: D8LDP1_ECTSI (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDP1_ECTSI) HSP 1 Score: 103 bits (258), Expect = 4.050e-22 Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 2
Query: 374 LLQKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAVGW--DPGDFCEWLIGDIAGSLN 577
LLQ+W SELCE P GKRER Q EL LSEEDA+ALSD+ VA YFEEAVG DPG+ C+WLIGDIAG LN
Sbjct: 380 LLQRWRSELCELPAGKRERYQSELGLSEEDASALSDDQSVALYFEEAVGAGSDPGEACKWLIGDIAGYLN 449
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A6N2EEG6_9CYAN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=3 Tax=Synechococcales TaxID=1890424 RepID=A0A6N2EEG6_9CYAN) HSP 1 Score: 61.6 bits (148), Expect = 1.500e-7 Identity = 33/73 (45.21%), Postives = 41/73 (56.16%), Query Frame = 2
Query: 374 LLQKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLNRCR 586
L + W +EL E P KR R +L LS+ DA L+DE P+A YFE V G DP W+ GDIA +N R
Sbjct: 304 LREGWRAELPELPAAKRHRYAEQLGLSQYDARVLTDERPMADYFEAVVAAGADPKAAANWISGDIAAHVNANR 376
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: K9PB93_CYAGP (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=4 Tax=Synechococcales TaxID=1890424 RepID=K9PB93_CYAGP) HSP 1 Score: 60.5 bits (145), Expect = 3.710e-7 Identity = 33/71 (46.48%), Postives = 39/71 (54.93%), Query Frame = 2
Query: 380 QKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLNRCR 586
+ W +EL E P KR R L LS DA L+DE P+A YFE AV G DP W+ GDIA +N R
Sbjct: 310 ESWRAELPELPAAKRHRYAESLGLSIYDARVLTDERPMAEYFEAAVAAGGDPKAVANWVTGDIAAHVNANR 380
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A0G8ARX2_9SYNE (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=17 Tax=Synechococcus TaxID=1129 RepID=A0A0G8ARX2_9SYNE) HSP 1 Score: 59.7 bits (143), Expect = 6.750e-7 Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 2
Query: 380 QKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLN 577
Q W +EL E P +R +L LSE DA L+DE P+A YFE AV G +P WL+GD++ LN
Sbjct: 307 QAWQAELPELPAARRHCYGQQLGLSEYDARVLTDERPMADYFEAAVAAGGNPKTIANWLMGDLSAYLN 374
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A1S6YHX3_9EUKA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=3 Tax=Paulinella micropora TaxID=1928728 RepID=A0A1S6YHX3_9EUKA) HSP 1 Score: 59.7 bits (143), Expect = 6.750e-7 Identity = 32/66 (48.48%), Postives = 38/66 (57.58%), Query Frame = 2
Query: 386 WHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLN 577
W EL E P KR R E+ LS DA L+DE P+A YFE A+ G DP WL+GDI+ LN
Sbjct: 307 WICELPELPASKRHRYVEEIGLSIYDARVLTDELPMAEYFESAIASGADPKILANWLMGDISAYLN 372
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A7G8ERD6_9CYAN (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=2 Tax=unclassified Cyanobium TaxID=2627006 RepID=A0A7G8ERD6_9CYAN) HSP 1 Score: 59.3 bits (142), Expect = 9.130e-7 Identity = 32/69 (46.38%), Postives = 38/69 (55.07%), Query Frame = 2
Query: 386 WHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLNRCR 586
W +EL E P KR R L LS+ DA L+DE P+A YFE V G DP W+ GDIA +N R
Sbjct: 312 WRAELPELPAAKRHRYADTLGLSQYDARVLTDERPMAAYFEAVVAAGADPKVTANWITGDIAAHVNANR 380
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A076HFM9_9SYNE (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=9 Tax=Bacteria TaxID=2 RepID=A0A076HFM9_9SYNE) HSP 1 Score: 58.5 bits (140), Expect = 1.660e-6 Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 2
Query: 380 QKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLNRCR 586
+ W +EL E P KR R EL LS+ DA L+DE P+A YFE V G D W+ GDIA +N R
Sbjct: 303 ESWRAELPELPAAKRHRYADELGLSQYDARVLTDERPMADYFEAVVAAGADAKLSANWITGDIAAHVNSNR 373
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: GATB_SYNSC (Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=32 Tax=Synechococcales TaxID=1890424 RepID=GATB_SYNSC) HSP 1 Score: 58.5 bits (140), Expect = 1.660e-6 Identity = 32/71 (45.07%), Postives = 39/71 (54.93%), Query Frame = 2
Query: 380 QKWHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAVGW--DPGDFCEWLIGDIAGSLNRCR 586
+ W +EL E P KR R EL LS+ DA L+DE P+A YFE VG D W+ GDIA +N R
Sbjct: 306 ESWRAELPELPAAKRHRYADELGLSQYDARVLTDERPMADYFEAVVGAGADAKLAANWITGDIAAHVNSNR 376
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Match: A0A2H4ZP99_9EUKA (Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial n=1 Tax=Paulinella longichromatophora TaxID=1708747 RepID=A0A2H4ZP99_9EUKA) HSP 1 Score: 58.2 bits (139), Expect = 2.240e-6 Identity = 30/66 (45.45%), Postives = 39/66 (59.09%), Query Frame = 2
Query: 386 WHSELCEFPVGKRERSQPELRLSEEDAAALSDEWPVAFYFEEAV--GWDPGDFCEWLIGDIAGSLN 577
W+ EL E P KR R E+ LS DA ++DE P+A YFE A+ G +P WL+GDI+ LN
Sbjct: 307 WNYELPELPASKRHRYVEEIGLSIYDARVITDELPMAEYFESAMASGAEPKALANWLMGDISAYLN 372 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig805.19383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig805.19383.1 >prot_Ecto-sp13_S_contig805.19383.1 ID=prot_Ecto-sp13_S_contig805.19383.1|Name=mRNA_Ecto-sp13_S_contig805.19383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp SARCSGFWACRTATGRTGSFVSTSTSSSGPRAKHASIPKYLAARKHTQSMback to top mRNA from alignment at Ecto-sp13_S_contig805:14782..17325- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig805.19383.1 ID=mRNA_Ecto-sp13_S_contig805.19383.1|Name=mRNA_Ecto-sp13_S_contig805.19383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2544bp|location=Sequence derived from alignment at Ecto-sp13_S_contig805:14782..17325- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig805:14782..17325- >mRNA_Ecto-sp13_S_contig805.19383.1 ID=mRNA_Ecto-sp13_S_contig805.19383.1|Name=mRNA_Ecto-sp13_S_contig805.19383.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig805:14782..17325- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |