mRNA_Ecto-sp13_S_contig80358.19363.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80358.19363.1
Unique NamemRNA_Ecto-sp13_S_contig80358.19363.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Match: D7FKY3_ECTSI (Outer dynein arm docking complex protein oda-dc n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 6.400e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:   10 GSQQAPAPTQGGGSVRGINLPMGMGXXXXXXXXXX-ATFLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL 300
            GSQQAPAPTQGGGSVRGI+LPMGM XXXXXXXXXX A FLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL
Sbjct:   27 GSQQAPAPTQGGGSVRGISLPMGMXXXXXXXXXXXXAAFLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL 124
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BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Match: A0A835Z6M1_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.990e-5
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:  139 LLSGKS-VISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKA 288
            L +GKS VIS+QS  LA+ ++  YD+QI YT+KIQ +R R+EDL F++ +A
Sbjct:   46 LTTGKSTVISLQSHNLAELLDVQYDQQIYYTDKIQQERGRVEDLRFKLKRA 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKY3_ECTSI6.400e-4195.92Outer dynein arm docking complex protein oda-dc n=... [more]
A0A835Z6M1_9STRA2.990e-552.94Plastocyanin-like domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80358contigEcto-sp13_S_contig80358:297..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score154.1
Seed ortholog evalue3.5e-35
Seed eggNOG ortholog2880.D7FKY3
Model size300
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2ENQM@1,2SS36@2759
Cds size300
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464076.6710377-CDS-Ecto-sp13_S_contig80358:296..5961681464076.6710377-CDS-Ecto-sp13_S_contig80358:296..596Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80358 297..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80358.19363.1prot_Ecto-sp13_S_contig80358.19363.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80358 297..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80358.19363.1

>prot_Ecto-sp13_S_contig80358.19363.1 ID=prot_Ecto-sp13_S_contig80358.19363.1|Name=mRNA_Ecto-sp13_S_contig80358.19363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
LSAGSQQAPAPTQGGGSVRGINLPMGMGGGGGGGGGGAATFLTGGGLLSG
KSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL
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mRNA from alignment at Ecto-sp13_S_contig80358:297..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80358.19363.1 ID=mRNA_Ecto-sp13_S_contig80358.19363.1|Name=mRNA_Ecto-sp13_S_contig80358.19363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80358:297..596+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCAGCAGGGTCGCAGCAAGCGCCAGCTCCCACCCAAGGCGGTGGAAG
CGTTAGAGGCATCAACCTTCCGATGGGGATGGGAGGAGGCGGCGGAGGCG
GCGGCGGCGGAGCGGCGACTTTCCTCACGGGAGGGGGGTTGCTGTCGGGG
AAGAGCGTGATCTCTGTGCAGAGCAAGCGACTGGCTGACGATGTCAACTA
CGTGTACGATCGGCAGATTCTGTACACGAACAAGATTCAGTTCCAACGGA
GCCGCATCGAAGACCTGACGTTTCGAATAGCCAAGGCGGAGAAGGAGCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80358:297..596+

>mRNA_Ecto-sp13_S_contig80358.19363.1 ID=mRNA_Ecto-sp13_S_contig80358.19363.1|Name=mRNA_Ecto-sp13_S_contig80358.19363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80358:297..596+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTCAGCAGGGTCGCAGCAAGCGCCAGCTCCCACCCAAGGCGGTGGAAG
CGTTAGAGGCATCAACCTTCCGATGGGGATGGGAGGAGGCGGCGGAGGCG
GCGGCGGCGGAGCGGCGACTTTCCTCACGGGAGGGGGGTTGCTGTCGGGG
AAGAGCGTGATCTCTGTGCAGAGCAAGCGACTGGCTGACGATGTCAACTA
CGTGTACGATCGGCAGATTCTGTACACGAACAAGATTCAGTTCCAACGGA
GCCGCATCGAAGACCTGACGTTTCGAATAGCCAAGGCGGAGAAGGAGCTC
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