prot_Ecto-sp13_S_contig80358.19363.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig80358.19363.1
Unique Nameprot_Ecto-sp13_S_contig80358.19363.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
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BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Match: D7FKY3_ECTSI (Outer dynein arm docking complex protein oda-dc n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKY3_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 6.400e-41
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 0 
Query:    4 GSQQAPAPTQGGGSVRGINLPMGMGXXXXXXXXXX-ATFLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL 100
            GSQQAPAPTQGGGSVRGI+LPMGM XXXXXXXXXX A FLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL
Sbjct:   27 GSQQAPAPTQGGGSVRGISLPMGMXXXXXXXXXXXXAAFLTGGGLLSGKSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL 124
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BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Match: A0A835Z6M1_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6M1_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 2.990e-5
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:   47 LLSGKS-VISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKA 96
            L +GKS VIS+QS  LA+ ++  YD+QI YT+KIQ +R R+EDL F++ +A
Sbjct:   46 LTTGKSTVISLQSHNLAELLDVQYDQQIYYTDKIQQERGRVEDLRFKLKRA 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80358.19363.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKY3_ECTSI6.400e-4195.92Outer dynein arm docking complex protein oda-dc n=... [more]
A0A835Z6M1_9STRA2.990e-552.94Plastocyanin-like domain-containing protein n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 79..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80358contigEcto-sp13_S_contig80358:297..596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80358.19363.1mRNA_Ecto-sp13_S_contig80358.19363.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig80358 297..596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig80358.19363.1 ID=prot_Ecto-sp13_S_contig80358.19363.1|Name=mRNA_Ecto-sp13_S_contig80358.19363.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
LSAGSQQAPAPTQGGGSVRGINLPMGMGGGGGGGGGGAATFLTGGGLLSG
KSVISVQSKRLADDVNYVYDRQILYTNKIQFQRSRIEDLTFRIAKAEKEL
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