prot_Ecto-sp13_S_contig8029.19352.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8029.19352.1
Unique Nameprot_Ecto-sp13_S_contig8029.19352.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length198
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Match: D8LFD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.810e-45
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 
Query:  103 MRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP 198
            MR WRGGGT GGTPPT SKGEPKKSD PS+P RSTGDGV GGNT RAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVIST+GQP
Sbjct:    1 MRAWRGGGTAGGTPPTASKGEPKKSDGPSVPPRSTGDGVMGGNTVRAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTIGQP 96
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BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Match: A0A6H5K3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.840e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 0 
Query:  103 MRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP 198
            MR WRGGGT GGT PT +KGEPKKSDEPS+P RSTGDGVKGGNT RAGTMESASLLAGNVQRLQFLRKKTGVDL VTVYSLYAMAIRSVISTVGQP
Sbjct:    1 MRAWRGGGTAGGTSPTATKGEPKKSDEPSVPPRSTGDGVKGGNTVRAGTMESASLLAGNVQRLQFLRKKTGVDLWVTVYSLYAMAIRSVISTVGQP 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD5_ECTSI4.810e-4590.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3A7_9PHAE1.840e-4490.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..198
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 36..44
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 45..52
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8029contigEcto-sp13_S_contig8029:4615..6447 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8029.19352.1mRNA_Ecto-sp13_S_contig8029.19352.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8029 4615..6449 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8029.19352.1 ID=prot_Ecto-sp13_S_contig8029.19352.1|Name=mRNA_Ecto-sp13_S_contig8029.19352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
PLTATCRVPTFRAMAPPCTTRMPRRIRTGSRCRSYSLLGFLLLGPRSSAV
LAGACRHSTCLGGGKRGGGDRRQLRAATPEQSRLVTPATGGRGGGSPLLH
RSMRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAG
TMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP
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