mRNA_Ecto-sp13_S_contig8029.19352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig8029.19352.1
Unique Name	mRNA_Ecto-sp13_S_contig8029.19352.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Match: D8LFD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 4.810e-45
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1

Query:  307 MRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP 594
            MR WRGGGT GGTPPT SKGEPKKSD PS+P RSTGDGV GGNT RAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVIST+GQP
Sbjct:    1 MRAWRGGGTAGGTPPTASKGEPKKSDGPSVPPRSTGDGVMGGNTVRAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTIGQP 96

[Close]

BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Match: A0A6H5K3A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A7_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.840e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 1

Query:  307 MRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAGTMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP 594
            MR WRGGGT GGT PT +KGEPKKSDEPS+P RSTGDGVKGGNT RAGTMESASLLAGNVQRLQFLRKKTGVDL VTVYSLYAMAIRSVISTVGQP
Sbjct:    1 MRAWRGGGTAGGTSPTATKGEPKKSDEPSVPPRSTGDGVKGGNTVRAGTMESASLLAGNVQRLQFLRKKTGVDLWVTVYSLYAMAIRSVISTVGQP 96

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig8029.19352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LFD5_ECTSI	4.810e-45	90.63	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5K3A7_9PHAE	1.840e-44	90.63	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig8029	contig	Ecto-sp13_S_contig8029:4615..6449 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	171.0
Seed ortholog evalue	5.5e-40
Seed eggNOG ortholog	2880.D8LFD5
Model size	596
KEGG ko	ko:K14950
KEGG TC	3.A.3.10
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
Exons	3
EggNOG free text desc.	calcium-transporting ATPase activity
EggNOG OGs	COG0474@1,KOG0209@2759
Cds size	594
COG Functional cat.	P
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464075.9619997-CDS-Ecto-sp13_S_contig8029:4614..4857	1681464075.9619997-CDS-Ecto-sp13_S_contig8029:4614..4857	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8029 4615..4857 +
1681464075.976039-CDS-Ecto-sp13_S_contig8029:5767..6055	1681464075.976039-CDS-Ecto-sp13_S_contig8029:5767..6055	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8029 5768..6055 +
1681464075.9868698-CDS-Ecto-sp13_S_contig8029:6384..6447	1681464075.9868698-CDS-Ecto-sp13_S_contig8029:6384..6447	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig8029 6385..6447 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig8029.19352.1	prot_Ecto-sp13_S_contig8029.19352.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig8029 4615..6447 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig8029:4615..6449+
coding sequence from alignment at Ecto-sp13_S_contig8029:4615..6449+

protein sequence of mRNA_Ecto-sp13_S_contig8029.19352.1

>prot_Ecto-sp13_S_contig8029.19352.1 ID=prot_Ecto-sp13_S_contig8029.19352.1|Name=mRNA_Ecto-sp13_S_contig8029.19352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=198bp
PLTATCRVPTFRAMAPPCTTRMPRRIRTGSRCRSYSLLGFLLLGPRSSAV
LAGACRHSTCLGGGKRGGGDRRQLRAATPEQSRLVTPATGGRGGGSPLLH
RSMRVWRGGGTVGGTPPTVSKGEPKKSDEPSMPSRSTGDGVKGGNTARAG
TMESASLLAGNVQRLQFLRKKTGVDLGVTVYSLYAMAIRSVISTVGQP

mRNA from alignment at Ecto-sp13_S_contig8029:4615..6449+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig8029.19352.1 ID=mRNA_Ecto-sp13_S_contig8029.19352.1|Name=mRNA_Ecto-sp13_S_contig8029.19352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8029:4615..6449+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCTGACTGCTACGTGTAGAGTTCCAACCTTCCGTGCGATGGCTCCTCC
ATGTACGACACGGATGCCTCGTCGCATCCGCACGGGCAGCCGGTGCCGCA
GTTATAGCCTTCTGGGCTTTCTGCTTCTGGGCCCTCGATCATCAGCCGTG
TTGGCTGGAGCTTGCAGACACAGCACATGTTTGGGCGGCGGCAAACGAGG
GGGTGGGGATCGGCGGCAGCTTCGGGCCGCGACGCCTGAGCAGGTGAGTG
CATGTATACTGGCGTTACTTGAGTGGTATCATTGTGTTGAAGAGTGCAGG
AAAATTAGTTCCACGCCATGAGTTCAATCACGCGGTACTGGGTTACTGGG
TTTGGCTCCATCGGTGGGGTGTGTCGCCTTACAACACACCGAGATAATCA
TTGTGGCATCAATCAGGTCGAGTGCGCCGTGTTGGCGGGTACTGTAGGCC
ACCCCCGACTTGAGCAAAACGTCGATCAGAACAAATACGAGGGTGGATTG
CGCTTACCGTTGAAGGTTTGCGAAACGCAAGGTCTGCAAGCTTGCCACGC
GGCAGCACGGGGGGCATTTATAGGAAGCATGCCGCAAATCTGCAGTTAGC
TGCTCCCTGCTTTACCGTGGAGCTCACGATAGGTTGTGCTGGGAGCACTG
TCTTCGATTCGAGCTTCCTCTGCTGCTGGCCGTGTAAAGCGCCAACGGTT
GATGGCGCCGTCGATAGCGGTCTGCCGGCGGGTAGGACAAACATGGCCTC
TGGCAAACCCTCTGGTCGGTTGGCACGGGAACTAGTTTCTCCCTCAATAA
CTGACCCCGTTCGCAGGCGGTAACTTATGGGTCTCAGGGATTGGTGTGTT
TCTCCATTGCAGTGGACACGTCGTGTCCAACGCGGTTTCCCATCTGTTAT
GACCCGGCCTTTGCCACCTTCCCGAAGTGTGGGGACGCGGGGCACACTCA
CGAAGTTTTCACGAAGTGGATGGTACTTTTCGAAGGCAAAACAATCGAGG
AGGCGCCCGGAGGGGCAGCGCTTTGAAAAAGTCGGTGCTCTTAGTCCAGA
TCCGACGCTGGAGAGATGCCTCCACAAGTATGTTCGACCATGCCGTGACC
CTTTTCCGGCCCATACCGCTGCTGTGTCTTTACGGTTCTGTATCGTGTCT
CAGTCGCGTCTCGTCACCCCCGCAACGGGCGGGAGAGGCGGCGGTTCTCC
TCTGCTGCACAGGAGCATGCGTGTTTGGCGGGGGGGCGGGACGGTGGGAG
GCACTCCGCCTACTGTTAGCAAGGGCGAGCCGAAGAAGAGCGACGAGCCC
TCGATGCCGTCCCGCTCTACGGGTGATGGCGTTAAGGGTGGTAACACCGC
GAGGGCGGGCACAATGGAGTCCGCGTCCTTGCTTGCGGGCAACGTTCAGC
GGTTGCAGTTTCTGAGGAAGAAGACGGGGGTTGATCTCGGGGTAAGTTCG
AGGTTGTGGAGAGGCCGGGCACTCGAGAGTTGACTCGAACGTCATCGTGT
CCAGGTGGTCGCCGGGACGATATAGAAATTTAGCACACCCAGGTATTACC
TCGAGGAGCGTCCTCCTCGGCCTAACTACCTTTTCTAGATTGGGAAGCAT
GCGTTTGCCCCACCGAAGAAGGGTTTGTTGTGTTTAGTCGTGCGCGGGTG
ACTCAGCAAACAATGCATGCTTGCCTCGGAGTCATCGAGGCTATGCCAAA
TATTTCGGCCGAATTGGTGACGGACACATATGTGGAGCGCCGCCTCCCCC
TTCTCCTCGCGCGCATCAAGGTGACGGTTTACTCCCTGTACGCTATGGCC
ATCCGGAGCGTCATCTCGACCGTCGGCCAACCGCT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8029:4615..6449+

>mRNA_Ecto-sp13_S_contig8029.19352.1 ID=mRNA_Ecto-sp13_S_contig8029.19352.1|Name=mRNA_Ecto-sp13_S_contig8029.19352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=594bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8029:4615..6449+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGCTGACTGCTACGTGTAGAGTTCCAACCTTCCGTGCGATGGCTCCTCC
ATGTACGACACGGATGCCTCGTCGCATCCGCACGGGCAGCCGGTGCCGCA
GTTATAGCCTTCTGGGCTTTCTGCTTCTGGGCCCTCGATCATCAGCCGTG
TTGGCTGGAGCTTGCAGACACAGCACATGTTTGGGCGGCGGCAAACGAGG
GGGTGGGGATCGGCGGCAGCTTCGGGCCGCGACGCCTGAGCAGTCGCGTC
TCGTCACCCCCGCAACGGGCGGGAGAGGCGGCGGTTCTCCTCTGCTGCAC
AGGAGCATGCGTGTTTGGCGGGGGGGCGGGACGGTGGGAGGCACTCCGCC
TACTGTTAGCAAGGGCGAGCCGAAGAAGAGCGACGAGCCCTCGATGCCGT
CCCGCTCTACGGGTGATGGCGTTAAGGGTGGTAACACCGCGAGGGCGGGC
ACAATGGAGTCCGCGTCCTTGCTTGCGGGCAACGTTCAGCGGTTGCAGTT
TCTGAGGAAGAAGACGGGGGTTGATCTCGGGGTGACGGTTTACTCCCTGT
ACGCTATGGCCATCCGGAGCGTCATCTCGACCGTCGGCCAACCG