mRNA_Ecto-sp13_S_contig80033.19323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: D7FMG2_ECTSI (Cycloeucalenol cycloisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMG2_ECTSI) HSP 1 Score: 114 bits (285), Expect = 5.010e-29 Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+VVTSFEATTSR VTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYF+V
Sbjct: 237 KVVTSFEATTSRAVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFVV 299
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7R9WGB3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGB3_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 9.020e-17 Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+VVT++EA RT+ + +V V+SY AF ETLTIS FPYY FEDR+MAY VGSAFYGIYF+V
Sbjct: 86 KVVTTYEAGMKRTILYIGVVIVLSYFTAFMETLTISSFPYYSFEDRNMAYTVGSAFYGIYFLV 148
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S0AUZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AUZ2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.800e-16 Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+V TSF RT V +V V+SY AF ETLTIS FPYY FEDR+MAY VGSAFYGIYF+V
Sbjct: 32 KVATSFAPGPRRTTLFVGMVIVLSYFTAFMETLTISSFPYYAFEDRNMAYTVGSAFYGIYFLV 94
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2V4D0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4D0_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.290e-16 Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+VVTSF+ +R L L+ MSY AF ETLTIS FPYY+FEDR+MAY VGSAFYGIYFIV
Sbjct: 169 KVVTSFQEGWARWFFLAALILAMSYFTAFAETLTISSFPYYDFEDRNMAYTVGSAFYGIYFIV 231
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S1GNB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNB7_CYCTE) HSP 1 Score: 74.7 bits (182), Expect = 1.120e-15 Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
T+FE RT+ V +V V SY AF ETLTIS FPYY FEDR MAY VGSAFYGIYFIV
Sbjct: 15 TTFELGLMRTILYVSVVLVFSYFTAFMETLTISSFPYYSFEDRVMAYTVGSAFYGIYFIV 74
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3XQ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ29_HETAK) HSP 1 Score: 77.0 bits (188), Expect = 2.170e-15 Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+V+T++ +RT L LV +SYA AF ETLTISGFPYY FEDR+MAY VGS FYGIYF+V
Sbjct: 198 KVLTTYAPGAARTAFLCSLVFALSYATAFAETLTISGFPYYAFEDRNMAYTVGSVFYGIYFLV 260
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3V6E4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6E4_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 2.740e-15 Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
TSFEA R + + V V+SY AF ETLTIS FPYY FEDRDMAY VGSAFYGIYF+V
Sbjct: 190 TSFEAGFKRRLLYISTVFVLSYFTAFVETLTISSFPYYSFEDRDMAYKVGSAFYGIYFLV 249
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2I495_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I495_9EUKA) HSP 1 Score: 75.9 bits (185), Expect = 2.970e-15 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 31 SRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+RT V L+ MSYA AF ETLTIS FPYY+FEDRD+AY VGSAFYG+YF+V
Sbjct: 117 ARTCLQVALILAMSYATAFMETLTISNFPYYDFEDRDLAYTVGSAFYGLYFVV 169
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3FMH2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FMH2_9EUKA) HSP 1 Score: 74.7 bits (182), Expect = 3.070e-15 Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
T++ A RT V L+ M+YA AF ETLTI FPYY FEDRDMAY VGSAFYGIYFIV
Sbjct: 55 TAYTAGPQRTALQVGLILAMAYATAFMETLTICHFPYYSFEDRDMAYTVGSAFYGIYFIV 114
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2YCQ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCQ2_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.200e-15 Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
+VVT+++A R++ V +V V SY AF ETLTIS +PYY+FEDR MAY VGSAFYGIYF+V
Sbjct: 134 KVVTTYQAGPMRSLLFVSVVVVFSYFTAFMETLTISSYPYYDFEDRHMAYTVGSAFYGIYFLV 196 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig80033.19323.1 >prot_Ecto-sp13_S_contig80033.19323.1 ID=prot_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYback to top mRNA from alignment at Ecto-sp13_S_contig80033:56..244- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig80033.19323.1 ID=mRNA_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80033:56..244- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80033:56..244- >mRNA_Ecto-sp13_S_contig80033.19323.1 ID=mRNA_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80033:56..244- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |