mRNA_Ecto-sp13_S_contig80033.19323.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig80033.19323.1
Unique NamemRNA_Ecto-sp13_S_contig80033.19323.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: D7FMG2_ECTSI (Cycloeucalenol cycloisomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMG2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 5.010e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +VVTSFEATTSR VTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYF+V
Sbjct:  237 KVVTSFEATTSRAVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFVV 299          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7R9WGB3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WGB3_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.020e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +VVT++EA   RT+  + +V V+SY  AF ETLTIS FPYY FEDR+MAY VGSAFYGIYF+V
Sbjct:   86 KVVTTYEAGMKRTILYIGVVIVLSYFTAFMETLTISSFPYYSFEDRNMAYTVGSAFYGIYFLV 148          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S0AUZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AUZ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.800e-16
Identity = 41/63 (65.08%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +V TSF     RT   V +V V+SY  AF ETLTIS FPYY FEDR+MAY VGSAFYGIYF+V
Sbjct:   32 KVATSFAPGPRRTTLFVGMVIVLSYFTAFMETLTISSFPYYAFEDRNMAYTVGSAFYGIYFLV 94          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2V4D0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4D0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 8.290e-16
Identity = 42/63 (66.67%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +VVTSF+   +R   L  L+  MSY  AF ETLTIS FPYY+FEDR+MAY VGSAFYGIYFIV
Sbjct:  169 KVVTSFQEGWARWFFLAALILAMSYFTAFAETLTISSFPYYDFEDRNMAYTVGSAFYGIYFIV 231          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S1GNB7_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNB7_CYCTE)

HSP 1 Score: 74.7 bits (182), Expect = 1.120e-15
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            T+FE    RT+  V +V V SY  AF ETLTIS FPYY FEDR MAY VGSAFYGIYFIV
Sbjct:   15 TTFELGLMRTILYVSVVLVFSYFTAFMETLTISSFPYYSFEDRVMAYTVGSAFYGIYFIV 74          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3XQ29_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ29_HETAK)

HSP 1 Score: 77.0 bits (188), Expect = 2.170e-15
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +V+T++    +RT  L  LV  +SYA AF ETLTISGFPYY FEDR+MAY VGS FYGIYF+V
Sbjct:  198 KVLTTYAPGAARTAFLCSLVFALSYATAFAETLTISGFPYYAFEDRNMAYTVGSVFYGIYFLV 260          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3V6E4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6E4_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.740e-15
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            TSFEA   R +  +  V V+SY  AF ETLTIS FPYY FEDRDMAY VGSAFYGIYF+V
Sbjct:  190 TSFEAGFKRRLLYISTVFVLSYFTAFVETLTISSFPYYSFEDRDMAYKVGSAFYGIYFLV 249          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2I495_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2I495_9EUKA)

HSP 1 Score: 75.9 bits (185), Expect = 2.970e-15
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   31 SRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +RT   V L+  MSYA AF ETLTIS FPYY+FEDRD+AY VGSAFYG+YF+V
Sbjct:  117 ARTCLQVALILAMSYATAFMETLTISNFPYYDFEDRDLAYTVGSAFYGLYFVV 169          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S3FMH2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FMH2_9EUKA)

HSP 1 Score: 74.7 bits (182), Expect = 3.070e-15
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:   10 TSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            T++ A   RT   V L+  M+YA AF ETLTI  FPYY FEDRDMAY VGSAFYGIYFIV
Sbjct:   55 TAYTAGPQRTALQVGLILAMAYATAFMETLTICHFPYYSFEDRDMAYTVGSAFYGIYFIV 114          
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Match: A0A7S2YCQ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YCQ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.200e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 1
Query:    1 QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAYVVGSAFYGIYFIV 189
            +VVT+++A   R++  V +V V SY  AF ETLTIS +PYY+FEDR MAY VGSAFYGIYF+V
Sbjct:  134 KVVTTYQAGPMRSLLFVSVVVVFSYFTAFMETLTISSYPYYDFEDRHMAYTVGSAFYGIYFLV 196          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig80033.19323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMG2_ECTSI5.010e-2995.24Cycloeucalenol cycloisomerase n=2 Tax=Ectocarpus T... [more]
A0A7R9WGB3_9STRA9.020e-1765.08Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0AUZ2_9STRA4.800e-1665.08Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2V4D0_9STRA8.290e-1666.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1GNB7_CYCTE1.120e-1568.33Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S3XQ29_HETAK2.170e-1563.49Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3V6E4_9STRA2.740e-1568.33Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2I495_9EUKA2.970e-1569.81Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3FMH2_9EUKA3.070e-1566.67Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2YCQ2_9STRA8.200e-1561.90Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig80033contigEcto-sp13_S_contig80033:56..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score116.3
Seed ortholog evalue5.1e-24
Seed eggNOG ortholog2880.D7FMG2
Preferred nameCPI1
Model size189
KEGG rclassRC00994
KEGG koko:K08246
KEGG ReactionR03775
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0016020
Exons1
EggNOG OGs28HCW@1,2QPR8@2759
EC5.5.1.9
Cds size189
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464073.2813263-CDS-Ecto-sp13_S_contig80033:55..2441681464073.2813263-CDS-Ecto-sp13_S_contig80033:55..244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig80033 56..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig80033.19323.1prot_Ecto-sp13_S_contig80033.19323.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig80033 56..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig80033.19323.1

>prot_Ecto-sp13_S_contig80033.19323.1 ID=prot_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
QVVTSFEATTSRTVTLVVLVGVMSYAVAFTETLTISGFPYYEFEDRDMAY
VVGSAFYGIYFIV
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mRNA from alignment at Ecto-sp13_S_contig80033:56..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig80033.19323.1 ID=mRNA_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80033:56..244- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTGACGTCCTTTGAGGCTACCACATCGCGGACGGTGACGCTGGT GGTGCTGGTGGGCGTGATGTCCTACGCGGTGGCTTTCACGGAGACCCTCA CTATCTCCGGGTTCCCGTACTACGAGTTCGAGGACAGAGACATGGCGTAC GTCGTGGGATCGGCGTTCTACGGGATATACTTCATCGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig80033:56..244-

>mRNA_Ecto-sp13_S_contig80033.19323.1 ID=mRNA_Ecto-sp13_S_contig80033.19323.1|Name=mRNA_Ecto-sp13_S_contig80033.19323.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig80033:56..244- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTCGTGACGTCCTTTGAGGCTACCACATCGCGGACGGTGACGCTGGT
GGTGCTGGTGGGCGTGATGTCCTACGCGGTGGCTTTCACGGAGACCCTCA
CTATCTCCGGGTTCCCGTACTACGAGTTCGAGGACAGAGACATGGCGTAC
GTCGTGGGATCGGCGTTCTACGGGATATACTTCATCGTC
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