mRNA_Ecto-sp13_S_contig8.19308.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8.19308.1
Unique NamemRNA_Ecto-sp13_S_contig8.19308.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8.19308.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 2.290e-116
Identity = 182/191 (95.29%), Postives = 189/191 (98.95%), Query Frame = 3 
Query:  534 MVKFSEDSPFLQDDGDGQPSAICSQHMRSLELLKAIVQVDTVLAGFLVLTVVGKDNEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPEEDLHTVGYWMIIIFGLMCPMAFAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA 1106
            MVKFSEDSPFLQDDGDGQPSAICSQH+RSL+LLKAIVQVDT+LAGFLVL+VVGK++EQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRP+EDLHTVGYWMIIIFGLMCPMA AGPTATLQMILHKFERDNEAG DALGSSRLSATRPIA
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAGLDALGSSRLSATRPIA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8.19308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI2.290e-11695.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8contigEcto-sp13_S_contig8:48268..54069 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2666
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000040.1
Cds size576
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8.19308.1prot_Ecto-sp13_S_contig8.19308.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8 49825..52650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464071.70337-UTR-Ecto-sp13_S_contig8:48267..498241681464071.70337-UTR-Ecto-sp13_S_contig8:48267..49824Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8 48268..49824 -
1681464071.748705-UTR-Ecto-sp13_S_contig8:52650..528071681464071.748705-UTR-Ecto-sp13_S_contig8:52650..52807Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8 52651..52807 -
1681464071.758304-UTR-Ecto-sp13_S_contig8:53693..540691681464071.758304-UTR-Ecto-sp13_S_contig8:53693..54069Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8 53694..54069 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464071.716047-CDS-Ecto-sp13_S_contig8:49824..501991681464071.716047-CDS-Ecto-sp13_S_contig8:49824..50199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8 49825..50199 -
1681464071.7263072-CDS-Ecto-sp13_S_contig8:51781..518681681464071.7263072-CDS-Ecto-sp13_S_contig8:51781..51868Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8 51782..51868 -
1681464071.7383406-CDS-Ecto-sp13_S_contig8:52536..526501681464071.7383406-CDS-Ecto-sp13_S_contig8:52536..52650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8 52537..52650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8.19308.1

>prot_Ecto-sp13_S_contig8.19308.1 ID=prot_Ecto-sp13_S_contig8.19308.1|Name=mRNA_Ecto-sp13_S_contig8.19308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MVKFSEDSPFLQDDGDGQPSAICSQHMRSLELLKAIVQVDTVLAGFLVLT
VVGKDNEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAW
YDPLFPAGFSAVGMFLLYLTIADAILIRLRPEEDLHTVGYWMIIIFGLMC
PMAFAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA*
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mRNA from alignment at Ecto-sp13_S_contig8:48268..54069-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8.19308.1 ID=mRNA_Ecto-sp13_S_contig8.19308.1|Name=mRNA_Ecto-sp13_S_contig8.19308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5802bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:48268..54069- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGCGGCGGCATGTTGGTAGGTTTACATTGATTTTGTGTCGACGACGAG
ATAGAGACAGAGACAGAGAGTCTGCGAGATTACCTCACAGCCCTCTTTCT
CTCACGCGATTGACTTGCTGCCGGGCAATAGAACTCCGGCTGGTGTCTTG
GGCAACGCTCACTGCCGATCTGTGCGTGGCAGCAAGGGCTACGCGGGCAG
CGTGATCAACAGCAGGAGGAGGCGACCTTGTGAAACCTTGAATAGCCTGG
AACGCCCATCTTTGACCTCTGTGCCCTGGCGAGAACGAGGCACCAAAACA
CGACTCTCCCCATTCCTGGCTGGGGTATCCACCCTCGCCACGCCTCATGT
ACTGCGTGATAATCGACTAACCAAAGGTGAGAAGCCTTCTGTAGAAGAGC
CGGGGCAGGGGTGCGCATATGCAGGCAGCATTACCTTCAACGTGGTGTGT
GTGCGGAGAAATGTACGTGCTGCGGCTGGTGCGTGCCGGCCAAAATAGAA
CAACCTCCAACGACCACGCCAACAAACGTCGTGTAAAGGCTACAGCATTC
CCCCCCTCTTTTGCGGATGTTAGCTAGCTTCGGGCCTCGTGGTCCAAGGC
GCTATCAGACGCCGAGTTGCCCTCACGCCCTCAGTTGAAACGCTGATTTG
CAGGAGCAGAGACGTTACTCCGAGGAAGGTGTAACAGCAGCAGTAAGCAC
TGCTGTTTTCTTCGTGGCCCAGGGCCCAGGGTGGTATCGAGTGCCACGCT
GCATTCACGCACACTGCAGCGAAGCACCAGCGAGAGCAATACCAGCGACA
ACACGTAAACCAAACGCGGGCTGGTGCATATGCAGCAGTTTCGAACCACC
TGCTGCTGCAGACGTTACCTGCTGCTGCAGACGTTCTCTACTGCTGTAAC
TCTCCGGCGAAAGTTCCCACGGCTCTGAACAGTCGAGGTGCTCGGAATAA
TGTTACAGCAGTATAGTTGGAGGTGGGCCCTTTGACCTGATGCGCTGGAA
GTTGGATTGGAACGAGTTCGGCCGCAGCTGTGAGTGAAGGGCGGCTACGT
GCAACACGGGAAAATGAATATTTCCTTGGGCAGCCTTTCCTCTAGCGTCT
TCAGTAGTTCTGCCTGACTAACTCACGCGTGCTCCTGGCCTACATCTGAA
TTCCGGCTTATCACCGCATATTCTTATCACGAAGTACATATTTTTCGCGA
GAAGTGGATCTTTTTCTGATCCTTGCTTCCCGTTCGTGCTTCCTTGGGCG
GTTTGTCCCAAGGGAGTTGTTTCTTTACCTTGAAGAGTGCGGAGGAAGAG
GAGGAGGTCGAGGTACGGACTGGCCTCTTGTTGTAGCAAGTAAATCTCCC
GAAGGCGACTGACGGCGAGGGATCTTCGGTTTGCGGACGCGGCCTGCACC
TGGAAATATATTCTAGCCCATGGTGAAGTTTTCGGAGGACAGTCCTTTCC
TGCAGGACGACGGAGACGGGCAACCGAGTGCCATCTGCTCGCAGCACATG
AGGAGCTTGGAACTGCTCAAGGCGATCGTTCAGGTTGAAGCTTTTTTTCT
TTCTTTTAAGGCCGTTCCCTACATTTTGATGGTCCCCGTCGTCGAGCTTG
TCCGCTGGTTTCTCGTTCCATATTTCATGTTTCACCTCTGCCGGAGTGTT
GGGAAGACCACCTCTGCGCCGTTTTTGTCCGACGAAATCGAGCTCCACGA
ATGCAGCTTAGAGTGTGCGTGTAGTGAGAAGAATGCCCGCTCACTTCTAA
GCCGTAGCTCGGTGACGCCAAGAATCTGAAGCCGGGTTCGGTGCAACCAG
AAACCAACAGAACCAACTGCGTGCGAGAGAGGTGCTACAGTCTTCAAACA
ATTTTGCGTCGCCCCGCCATAGAGTTGATGGGCCATCTATTCAACACCCA
AAGGCTACTCAGACCAGTAGGGGAGGGAATCTGGGACGGTTCTCATCACC
TCTTAATCGAAGGGTGGGTTGTGTTCATGTCTCACGCGATGCCCGACATT
TTGGATATTGAGGAAGGTATGCGCTGGCAGCGCCAAGCGTCCCTGGAGAG
GGTTGCTTGTTGCGGACATGGGAAACATTTTGTGCGTGGGTGTGCTCGGA
CTCCACTGCTGCAACGAAATGGGCCTTACATTGCTTGCGGTGTGATCACC
CGGGCTGTTCGCTTTTCTCCTTGGCACTGCTGTGCGGCGTCTCACCCCCA
GGTTGACACCGTTCTCGCTGGATTTCTTGTGCTAACCGTGGTGGGCAAGG
ACAATGAGCAGATCACGAAAGACGAGGAGAAGGTTCAGGTCAGAACATTT
TAGAGTTTTTTGCTACATTTGTGCTTTGCTCAGGAGGTACCGTTCCATTT
TTACTAGGCCGATGTACAAGGGTCGCCGCTGGTTTCCTTGTTGAAACCGC
GGAGGGGAAAACTGGGTCTGCACAGCCGTTGTTGCTGTTCCCGGTGCGTA
GCACGGAACACGGGTACGCCGGCGGTTCACGACCGTTTCAACAACATCCG
AAATCTTGAGCGACGTGTAATCCCGGGTGCCCGATAGAGAAGAAATGCCA
ACGCCAATGCGGAGACGGCAAGAAAAACAACGGGTGCCTTGAGGCAGTTT
CTTTTCGAAAGAAATGGCCGCACCGGGCGGGCGAGATGCGCAACGAGCAC
AGCCTTTTCTACCCATATCGTGAGCACGAAGAGCGCGCCCTTGTGTCCGA
GTCGTGGCTCTCGTGTCACCGTTACCCTACCGAGAAAAGGGGCGTGAAAT
CAATCGTCAAATGACGAGCCATGCACCAACGAATGTGTGACCCTCTGGCA
CTGGATTTGAGTACAACGATCTGAACGATAGTGTCGTCCTGAATGTTATG
AGGTTCACACGAGTAGCAATCCCTGAAGATCCTGATGATGACTCACTTGT
TGATTGTTGTTGTCTCTCTCTTGATTAATTCTCATGCAGCAGCACCCTTG
CTGACTCTGCTTCAGATAAACTGAATAGATGGGGGCGCAGGCCGCTCCTT
GCTGGGACGGGGGGTGCATTGGCTGTGTCCCCTGTTTAGCAACAATCCAA
AGTAGTTGCAGTTCCCGCCAGATCTACATGTCTTGCCTAATAGAACTATT
GTTCAGATCGTTGCACTCAAATCCCACAACACTAGCCCACCCTGGAGGTT
CGTATATGGAGACCTTAGTCAAAATCTACAATTCGAGGATGAATCGAAGA
TGCCCAACTCCACAACTCAACAATTCGCCATCCCGCACACCTACATCAGA
TGGACAATGACCATCGCCGTGAACACAGATGCAAAGGGACTAACGAAAAC
GGGGAGAAAACGGTCCACAGGACAAGACAAGAATAGAAATCGAAGCCCAA
ACTGAAAACAAACGAAAATGCCATAACCTCAAGGAAAGGCGATACGCCTC
GACTCAAACGTCCAAAAAAAAACCCGTTGGAACCGACGAAGGCAAAGACG
CAGAAAATCGAACACCAAAAAGACGTACTTATCGGTGAAAAACCCAACGT
CACTGGATCGAAGCAACAGGGGTCGTATGCATTACACCGACCAAGTATTC
TGTTCGCGGCAATAGAAAAGTAAACAAATCGCCAACGCGAAACGACGTAC
GAAACACCAAAAGTCGATCGTCTAAAGGACAGACAAACAGGGGTCGTAAC
AAAACGAAATGCAGTACCTATGAAAACGACAACAAAAGCTCAAGCGCACC
AACTAGGAGCATAAAGGAAGCCGGGAAGAAAACGCGAAACAACCAACCCG
AAAGCTTCTAAACGAGCAGTCCGTACCACAACCAACCAACCGAAACACAA
ACTACCAAACTCTCAAGCGTTACACGGTGCCCGCCCCCCCCCCCGCCTGT
GCAACTCTCGGATCCCCTAGATGGTGCTGCAAGTCGTGACCGCATCGGTG
TTCCTGGCGGCGATCGCGCACACCGTGGTGCTCATGGTGTGCACCGGTTG
GAGGTATACCCTGGCCTGGTACGACCCCCTATTCCCGGCGGGGTTCTCAG
CCGTAGGCATGTTCCTGCTGTACTTAACGATCGCGGACGCGATCCTGATT
CGGCTGCGGCCCGAGGAAGACCTGCACACGGTAGGGTACTGGATGATCAT
CATCTTCGGCCTGATGTGCCCGATGGCCTTCGCGGGTCCTACTGCTACGC
TTCAGATGATTCTGCACAAGTTTGAGAGGGACAACGAGGCTGGCCCTGAT
GCGTTGGGTAGCTCAAGGCTGTCGGCGACCCGCCCCATTGCTTAGCGCAA
CAGATCACGGACGCGTTGCCTGGGCGCTTATTCGATATAGCCAGGGCGTC
TTCAAGTCATGCACATCACATGTCGGCCTCTTGTTCGTGGCGTCCTTTGG
AGGTGGGGCGCAAGCGCGGTGTTGTCACCCGGCACGGCAGACACTACAGG
ATGGAAGGGGGAGAACGTTACAAGGCCAATGTCGCGCGGGTATCGAGCAC
CAAATGTCGGCTGGTGCCTGCCTCCGTCTTTGTGGAAAGGGACCTTCGCG
GCGCGGCCTCTGTGCCTGTTTGTCATCGTTCTGCTTCGTCGTCGTAGCCC
TGCTGGCGACTTGATCGTGCTTCGTTTTTCGGAGTACGTAACAACTCGTT
GATTGTCAACCCTTTTTCTTGTCCTGCGACCACGTCGATCGTGGGTATTG
CACCAACGCGTGCGATTGCCGTGCATGCGTGTTTCATTTTTGGATTTATC
ACATCGCTGTCCTTTAACTTGTGGCTGTGAGGGCACGCATCTCGAGTGTA
ATGCTGGAGTATCCGTTTGGTCTGCCCACGCACGCATTGCGCCGGAAACA
CAACCCTTCTGGTCGTCGCGCTAGGGCTTTGACTCTCACGTCATCTGTAT
ATTATGCCTTGATTGGTATTTTTTCACGTGGCCACCATGGTCTATTTTGT
TGCACATTGGTTTTTTTACGCCCAACTTTCGGGCGGTTTGGTGAAAGGAA
GCTGGCGGGGTGCGCTCGGTGAAGCGTAGGGGACCCTGCATGCAAAAGAG
CAACCAGTCCGGGCGGTGGTGGTCAGTGTTGTCTTTTCGTTCACCGGCCA
TGGTCGGAAGTGACACCGCTGTTGTGACTTGTGCTTTCACACCTTTTTGA
AAGTAGATGCGTATTGTTCGCGATGATCTGATCCACGCTCATTTGTGACT
CGTGCATACTCTTGTTGTTTAATCGATTACTTGCCGTCTCAGCAGCCTGA
TTTGGGTGGATCTTGTTGCAGAAGCTAGAGTTGCGATCGGGTTTCCAGAG
GCAAGACGTCGTGAAGCCGATGGTTTCATGGTGTCATCCTTTTGAGACAT
GGGTGGTTGTTCTCGAGGGAGTCTGTGTCTGGAAGGTTGGTGGTTTGGTA
TAAAATATCAAACAACGCGACACACATGAACCATATCTTTGGAGAACCAG
GGCCATCCTCTCAGCCGCCGACTATGGCCCGCACGTGCAACCAGGGTTTA
CAAATCGATTGGGCCGTTTGTCGTAAACTACTTGTACGAGAAACCAGCGT
GGTATTCATATTGTTGGGCTTGATCGGTCCGCTCGCTCGTAGGGGGCTCG
GTATCGCAGGCTACGTAACAAAAGAGCGGAACTTTCCAGACGCAGGATGT
CTTGTTCGCTGAATGTAAGGGGGCAGTCTCTGCCTGCGGCAAAATTGGTC
GGGTAGCATTGTCATCGCGGCTTCTGGATTGTCGGCTGGACCCCGGAGTG
TAAAGAAGAAGGCCGGAATATGGGAAGCGAGGGGCGGAGAAGATGCTTAC
CTAAACGATCGTAGGCCGCCACCATCTGTCAATCTGCGGTTGGGCATGGG
AG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8:48268..54069-

>mRNA_Ecto-sp13_S_contig8.19308.1 ID=mRNA_Ecto-sp13_S_contig8.19308.1|Name=mRNA_Ecto-sp13_S_contig8.19308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8:48268..54069- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAGTTTTCGGAGGACAGTCCTTTCCTGCAGGACGACGGAGACGG
GCAACCGAGTGCCATCTGCTCGCAGCACATGAGGAGCTTGGAACTGCTCA
AGGCGATCGTTCAGGTTGACACCGTTCTCGCTGGATTTCTTGTGCTAACC
GTGGTGGGCAAGGACAATGAGCAGATCACGAAAGACGAGGAGAAGGTTCA
GATGGTGCTGCAAGTCGTGACCGCATCGGTGTTCCTGGCGGCGATCGCGC
ACACCGTGGTGCTCATGGTGTGCACCGGTTGGAGGTATACCCTGGCCTGG
TACGACCCCCTATTCCCGGCGGGGTTCTCAGCCGTAGGCATGTTCCTGCT
GTACTTAACGATCGCGGACGCGATCCTGATTCGGCTGCGGCCCGAGGAAG
ACCTGCACACGGTAGGGTACTGGATGATCATCATCTTCGGCCTGATGTGC
CCGATGGCCTTCGCGGGTCCTACTGCTACGCTTCAGATGATTCTGCACAA
GTTTGAGAGGGACAACGAGGCTGGCCCTGATGCGTTGGGTAGCTCAAGGC
TGTCGGCGACCCGCCCCATTGCTTAG
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