prot_Ecto-sp13_S_contig8.19308.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig8.19308.1
Unique Nameprot_Ecto-sp13_S_contig8.19308.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length192
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8.19308.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 361 bits (927), Expect = 5.620e-126
Identity = 182/191 (95.29%), Postives = 189/191 (98.95%), Query Frame = 0 
Query:    1 MVKFSEDSPFLQDDGDGQPSAICSQHMRSLELLKAIVQVDTVLAGFLVLTVVGKDNEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPEEDLHTVGYWMIIIFGLMCPMAFAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA 191
            MVKFSEDSPFLQDDGDGQPSAICSQH+RSL+LLKAIVQVDT+LAGFLVL+VVGK++EQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRP+EDLHTVGYWMIIIFGLMCPMA AGPTATLQMILHKFERDNEAG DALGSSRLSATRPIA
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAGLDALGSSRLSATRPIA 191
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8.19308.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI5.620e-12695.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 53..71
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 139..161
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 162..191
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 128..138
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..103
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..31
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 104..127
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 32..52
NoneNo IPR availableTMHMMTMhelixcoord: 138..160
NoneNo IPR availableTMHMMTMhelixcoord: 35..52
NoneNo IPR availableTMHMMTMhelixcoord: 72..94
NoneNo IPR availableTMHMMTMhelixcoord: 104..126

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8contigEcto-sp13_S_contig8:49825..52650 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8.19308.1mRNA_Ecto-sp13_S_contig8.19308.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig8 48268..54069 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig8.19308.1 ID=prot_Ecto-sp13_S_contig8.19308.1|Name=mRNA_Ecto-sp13_S_contig8.19308.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=192bp
MVKFSEDSPFLQDDGDGQPSAICSQHMRSLELLKAIVQVDTVLAGFLVLT
VVGKDNEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAW
YDPLFPAGFSAVGMFLLYLTIADAILIRLRPEEDLHTVGYWMIIIFGLMC
PMAFAGPTATLQMILHKFERDNEAGPDALGSSRLSATRPIA*
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