mRNA_Ecto-sp13_S_contig7996.19300.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7996.19300.1
Unique NamemRNA_Ecto-sp13_S_contig7996.19300.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: D7FPD7_ECTSI (Chromosome 20 open reading frame 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.030e-27
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVRL 162
            YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGY FLGSSQN YLGRVRL
Sbjct:  119 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYTFLGSSQNKYLGRVRL 172
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BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.060e-26
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVRL 162
            YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGY FLGSSQNNYLGRVRL
Sbjct:  409 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYTFLGSSQNNYLGRVRL 462
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BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: A0A835YS31_9STRA (Str_synth domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS31_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.760e-8
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    1 YGLVFVLGLD-GTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVR 159
            YGLV  L    G V+ S HD TGR  FVS A R   +GYLFLGSSQN +L RVR
Sbjct:  405 YGLVLELNAQTGEVQASYHDPTGRVPFVSTALRHPTTGYLFLGSSQNPFLARVR 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPD7_ECTSI5.030e-2796.30Chromosome 20 open reading frame 3 n=1 Tax=Ectocar... [more]
A0A6H5KHN1_9PHAE8.060e-2698.15Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YS31_9STRA1.760e-859.26Str_synth domain-containing protein n=1 Tax=Tribon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7996contigEcto-sp13_S_contig7996:6853..7017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D7FPD7
Preferred nameYLS2
Model size165
KEGG koko:K21407
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009751,GO:0009753,GO:0010033,GO:0012505,GO:0014070,GO:0016020,GO:0016787,GO:0016788,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046677,GO:0050896,GO:0051704,GO:0051707,GO:1901700
Exons1
EggNOG free text desc.strictosidine synthase activity
EggNOG OGsCOG1185@1,KOG1520@2759
Cds size165
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.8454375-CDS-Ecto-sp13_S_contig7996:6852..70171681464070.8454375-CDS-Ecto-sp13_S_contig7996:6852..7017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7996 6853..7017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7996.19300.1prot_Ecto-sp13_S_contig7996.19300.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7996 6853..7017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7996.19300.1

>prot_Ecto-sp13_S_contig7996.19300.1 ID=prot_Ecto-sp13_S_contig7996.19300.1|Name=mRNA_Ecto-sp13_S_contig7996.19300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLG
RVRL*
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mRNA from alignment at Ecto-sp13_S_contig7996:6853..7017-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7996.19300.1 ID=mRNA_Ecto-sp13_S_contig7996.19300.1|Name=mRNA_Ecto-sp13_S_contig7996.19300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7996:6853..7017- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGCCTGGTGTTCGTCCTCGGCTTGGATGGCACGGTGAAGGAGAGCAT
GCACGACGCGACGGGTCGGACGGCGTTCGTCAGCGCCGCGTACCGGAGCT
CCAAAAGCGGTTACCTATTCCTCGGATCGAGCCAAAACAACTATCTGGGG
CGGGTCCGTTTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7996:6853..7017-

>mRNA_Ecto-sp13_S_contig7996.19300.1 ID=mRNA_Ecto-sp13_S_contig7996.19300.1|Name=mRNA_Ecto-sp13_S_contig7996.19300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7996:6853..7017- (Ectocarpus species13 EcNAP12_S_4_19m)
TACGGCCTGGTGTTCGTCCTCGGCTTGGATGGCACGGTGAAGGAGAGCAT
GCACGACGCGACGGGTCGGACGGCGTTCGTCAGCGCCGCGTACCGGAGCT
CCAAAAGCGGTTACCTATTCCTCGGATCGAGCCAAAACAACTATCTGGGG
CGGGTCCGTTTGTGA
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