prot_Ecto-sp13_S_contig7996.19300.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7996.19300.1
Unique Nameprot_Ecto-sp13_S_contig7996.19300.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: D7FPD7_ECTSI (Chromosome 20 open reading frame 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 5.030e-27
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 0
Query:    1 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVRL 54
            YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGY FLGSSQN YLGRVRL
Sbjct:  119 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYTFLGSSQNKYLGRVRL 172          
BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: A0A6H5KHN1_9PHAE (Str_synth domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 8.060e-26
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 0
Query:    1 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVRL 54
            YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGY FLGSSQNNYLGRVRL
Sbjct:  409 YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYTFLGSSQNNYLGRVRL 462          
BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Match: A0A835YS31_9STRA (Str_synth domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS31_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.760e-8
Identity = 32/54 (59.26%), Postives = 35/54 (64.81%), Query Frame = 0
Query:    1 YGLVFVLGLD-GTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLGRVR 53
            YGLV  L    G V+ S HD TGR  FVS A R   +GYLFLGSSQN +L RVR
Sbjct:  405 YGLVLELNAQTGEVQASYHDPTGRVPFVSTALRHPTTGYLFLGSSQNPFLARVR 458          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7996.19300.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPD7_ECTSI5.030e-2796.30Chromosome 20 open reading frame 3 n=1 Tax=Ectocar... [more]
A0A6H5KHN1_9PHAE8.060e-2698.15Str_synth domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YS31_9STRA1.760e-859.26Str_synth domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7996contigEcto-sp13_S_contig7996:6853..7017 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7996.19300.1mRNA_Ecto-sp13_S_contig7996.19300.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7996 6853..7017 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7996.19300.1 ID=prot_Ecto-sp13_S_contig7996.19300.1|Name=mRNA_Ecto-sp13_S_contig7996.19300.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
YGLVFVLGLDGTVKESMHDATGRTAFVSAAYRSSKSGYLFLGSSQNNYLG
RVRL*
back to top