mRNA_Ecto-sp13_S_contig79893.19290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79893.19290.1
Unique NamemRNA_Ecto-sp13_S_contig79893.19290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: D7G389_ECTSI (Ras-related protein Rab n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G389_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.510e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV
Sbjct:  138 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 181
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: F0YEW4_AURAN (Ras-related protein Rab (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW4_AURAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-13
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG+IAR YYK+A GA LVYDI R  +FKT+ +WK EID KV
Sbjct:   77 QDRFGAIARVYYKDAFGAFLVYDISRPETFKTIVKWKDEIDSKV 120
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.930e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG+I+R YYK+ALGA LVYD+ R ++F TV +WKGEID KV
Sbjct:   67 QDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKV 110
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2G1P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1P4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.190e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG+IAR YYK+A GA LVYD+ R  +F+TV +WK EID KV
Sbjct:    9 QDRFGAIARVYYKDAYGAFLVYDLSRPRTFETVAKWKKEIDSKV 52
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.230e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG+IAR YYK+A GA LVYD+ R  +F+TV +WK EID KV
Sbjct:   86 QDRFGAIARVYYKDAFGAFLVYDLSRQRTFETVSKWKKEIDAKV 129
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A8C4X1F6_EPTBU (Ras-related protein Rab n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4X1F6_EPTBU)

HSP 1 Score: 65.5 bits (158), Expect = 8.910e-12
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            Q+RFG++ R YYKEA+GA +VYDI RSS+F+ V +WK +IDEKV
Sbjct:   69 QERFGNMTRVYYKEAVGAFVVYDITRSSTFEAVMKWKHDIDEKV 112
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A443QU19_9ACAR (Ras-related protein Rab n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QU19_9ACAR)

HSP 1 Score: 63.9 bits (154), Expect = 1.970e-11
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            Q+RFG++ R YYKEA+GA++ YDI R +SF++V RWK ++DEKV
Sbjct:   32 QERFGNMTRVYYKEAVGAIITYDISRPASFESVLRWKRDLDEKV 75
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.250e-11
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG+IAR YYK+A GA+LVYD+ R  +F+ V +WK EID KV
Sbjct:   68 QDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKV 111
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.320e-11
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            QDRFG IAR YYK++ GAL+VYD  R  +F TV++WK EID+KV
Sbjct:   68 QDRFGVIARTYYKDSYGALIVYDASRPPTFDTVEKWKREIDDKV 111
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BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A2B4SF95_STYPI (Ras-related protein Rab-38 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SF95_STYPI)

HSP 1 Score: 63.5 bits (153), Expect = 2.450e-11
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 132
            Q+RFG++ R YYKEA+GA LV+D+ R+S+F+ VQ+WK ++D KV
Sbjct:   13 QERFGNMTRVYYKEAVGAFLVFDVTRASTFEAVQKWKNDLDNKV 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G389_ECTSI3.510e-21100.00Ras-related protein Rab n=1 Tax=Ectocarpus silicul... [more]
F0YEW4_AURAN3.350e-1368.18Ras-related protein Rab (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2S186_9STRA4.930e-1368.18Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
A0A7S2G1P4_9STRA1.190e-1265.91Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2APD4_9STRA4.230e-1265.91Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
A0A8C4X1F6_EPTBU8.910e-1263.64Ras-related protein Rab n=2 Tax=Eptatretus burgeri... [more]
A0A443QU19_9ACAR1.970e-1159.09Ras-related protein Rab n=1 Tax=Dinothrombium tinc... [more]
A0A7S2V4T6_9STRA2.250e-1163.64Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A6V1S8I5_HETAK2.320e-1163.64Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A2B4SF95_STYPI2.450e-1156.82Ras-related protein Rab-38 n=2 Tax=Pocilloporidae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79893contigEcto-sp13_S_contig79893:446..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score91.3
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D7G389
Preferred nameRAB32
Model size132
KEGG koko:K07918,ko:K07923,ko:K07976
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000166,GO:0000323,GO:0001882,GO:0001883,GO:0002376,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005776,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006856,GO:0006873,GO:0006885,GO:0006996,GO:0007005,GO:0007033,GO:0007040,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008055,GO:0008057,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009605,GO:0009894,GO:0009987,GO:0010256,GO:0010506,GO:0010876,GO:0010883,GO:0010941,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018130,GO:0019001,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019748,GO:0019867,GO:0019882,GO:0019915,GO:0021700,GO:0022607,GO:0023052,GO:0030003,GO:0030004,GO:0030139,GO:0030154,GO:0030641,GO:0030659,GO:0030742,GO:0031090,GO:0031323,GO:0031329,GO:0031410,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0031984,GO:0032438,GO:0032482,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0033036,GO:0033059,GO:0033060,GO:0033162,GO:0033363,GO:0034613,GO:0035556,GO:0035639,GO:0035646,GO:0035650,GO:0035651,GO:0036094,GO:0036211,GO:0036461,GO:0042440,GO:0042441,GO:0042470,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043324,GO:0043412,GO:0043473,GO:0043474,GO:0043476,GO:0043482,GO:0043485,GO:0043687,GO:0044085,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044840,GO:0044841,GO:0044877,GO:0045009,GO:0045184,GO:0045335,GO:0045851,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046907,GO:0048066,GO:0048069,GO:0048072,GO:0048753,GO:0048757,GO:0048770,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0050931,GO:0051179,GO:0051234,GO:0051235,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0060155,GO:0065007,GO:0065008,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072657,GO:0080171,GO:0090382,GO:0090383,GO:0090741,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098805,GO:1901214,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1903232,GO:1905952
Exons1
EggNOG free text desc.BLOC-2 complex binding
EggNOG OGsKOG4423@1,KOG4423@2759
Cds size132
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.1928947-CDS-Ecto-sp13_S_contig79893:445..5771681464070.1928947-CDS-Ecto-sp13_S_contig79893:445..577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79893 446..577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79893.19290.1prot_Ecto-sp13_S_contig79893.19290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79893 446..577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79893.19290.1

>prot_Ecto-sp13_S_contig79893.19290.1 ID=prot_Ecto-sp13_S_contig79893.19290.1|Name=mRNA_Ecto-sp13_S_contig79893.19290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV
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mRNA from alignment at Ecto-sp13_S_contig79893:446..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79893.19290.1 ID=mRNA_Ecto-sp13_S_contig79893.19290.1|Name=mRNA_Ecto-sp13_S_contig79893.19290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79893:446..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATAGATTCGGGTCGATCGCACGGGCTTACTACAAGGAGGCCTTGGG
GGCCCTCTTGGTGTACGATATCGGGCGAAGCTCTAGCTTCAAGACGGTCC
AGAGGTGGAAGGGGGAGATAGACGAGAAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79893:446..577+

>mRNA_Ecto-sp13_S_contig79893.19290.1 ID=mRNA_Ecto-sp13_S_contig79893.19290.1|Name=mRNA_Ecto-sp13_S_contig79893.19290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79893:446..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGATAGATTCGGGTCGATCGCACGGGCTTACTACAAGGAGGCCTTGGG
GGCCCTCTTGGTGTACGATATCGGGCGAAGCTCTAGCTTCAAGACGGTCC
AGAGGTGGAAGGGGGAGATAGACGAGAAGGTG
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