prot_Ecto-sp13_S_contig79893.19290.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig79893.19290.1
Unique Nameprot_Ecto-sp13_S_contig79893.19290.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length44
Homology
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: D7G389_ECTSI (Ras-related protein Rab n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G389_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 3.510e-21
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV
Sbjct:  138 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 181          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: F0YEW4_AURAN (Ras-related protein Rab (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEW4_AURAN)

HSP 1 Score: 68.6 bits (166), Expect = 3.350e-13
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG+IAR YYK+A GA LVYDI R  +FKT+ +WK EID KV
Sbjct:   77 QDRFGAIARVYYKDAFGAFLVYDISRPETFKTIVKWKDEIDSKV 120          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2S186_9STRA (Ras-related protein Rab n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S186_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.930e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG+I+R YYK+ALGA LVYD+ R ++F TV +WKGEID KV
Sbjct:   67 QDRFGAISRVYYKDALGAFLVYDLARPATFDTVVKWKGEIDAKV 110          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2G1P4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G1P4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.190e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG+IAR YYK+A GA LVYD+ R  +F+TV +WK EID KV
Sbjct:    9 QDRFGAIARVYYKDAYGAFLVYDLSRPRTFETVAKWKKEIDSKV 52          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2APD4_9STRA (Ras-related protein Rab n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APD4_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 4.230e-12
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG+IAR YYK+A GA LVYD+ R  +F+TV +WK EID KV
Sbjct:   86 QDRFGAIARVYYKDAFGAFLVYDLSRQRTFETVSKWKKEIDAKV 129          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A8C4X1F6_EPTBU (Ras-related protein Rab n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4X1F6_EPTBU)

HSP 1 Score: 65.5 bits (158), Expect = 8.910e-12
Identity = 28/44 (63.64%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            Q+RFG++ R YYKEA+GA +VYDI RSS+F+ V +WK +IDEKV
Sbjct:   69 QERFGNMTRVYYKEAVGAFVVYDITRSSTFEAVMKWKHDIDEKV 112          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A443QU19_9ACAR (Ras-related protein Rab n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443QU19_9ACAR)

HSP 1 Score: 63.9 bits (154), Expect = 1.970e-11
Identity = 26/44 (59.09%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            Q+RFG++ R YYKEA+GA++ YDI R +SF++V RWK ++DEKV
Sbjct:   32 QERFGNMTRVYYKEAVGAIITYDISRPASFESVLRWKRDLDEKV 75          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A7S2V4T6_9STRA (Ras-related protein Rab n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4T6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.250e-11
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG+IAR YYK+A GA+LVYD+ R  +F+ V +WK EID KV
Sbjct:   68 QDRFGAIARVYYKDAFGAMLVYDVTRPPTFEMVSKWKEEIDTKV 111          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A6V1S8I5_HETAK (Ras-related protein Rab n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S8I5_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.320e-11
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            QDRFG IAR YYK++ GAL+VYD  R  +F TV++WK EID+KV
Sbjct:   68 QDRFGVIARTYYKDSYGALIVYDASRPPTFDTVEKWKREIDDKV 111          
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Match: A0A2B4SF95_STYPI (Ras-related protein Rab-38 n=2 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SF95_STYPI)

HSP 1 Score: 63.5 bits (153), Expect = 2.450e-11
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 0
Query:    1 QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV 44
            Q+RFG++ R YYKEA+GA LV+D+ R+S+F+ VQ+WK ++D KV
Sbjct:   13 QERFGNMTRVYYKEAVGAFLVFDVTRASTFEAVQKWKNDLDNKV 56          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79893.19290.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G389_ECTSI3.510e-21100.00Ras-related protein Rab n=1 Tax=Ectocarpus silicul... [more]
F0YEW4_AURAN3.350e-1368.18Ras-related protein Rab (Fragment) n=1 Tax=Aureoco... [more]
A0A7S2S186_9STRA4.930e-1368.18Ras-related protein Rab n=1 Tax=Rhizochromulina ma... [more]
A0A7S2G1P4_9STRA1.190e-1265.91Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2APD4_9STRA4.230e-1265.91Ras-related protein Rab n=1 Tax=Dictyocha speculum... [more]
A0A8C4X1F6_EPTBU8.910e-1263.64Ras-related protein Rab n=2 Tax=Eptatretus burgeri... [more]
A0A443QU19_9ACAR1.970e-1159.09Ras-related protein Rab n=1 Tax=Dinothrombium tinc... [more]
A0A7S2V4T6_9STRA2.250e-1163.64Ras-related protein Rab n=1 Tax=Fibrocapsa japonic... [more]
A0A6V1S8I5_HETAK2.320e-1163.64Ras-related protein Rab n=1 Tax=Heterosigma akashi... [more]
A0A2B4SF95_STYPI2.450e-1156.82Ras-related protein Rab-38 n=2 Tax=Pocilloporidae ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 1..44
e-value: 2.4E-9
score: 38.6
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 1..40
NoneNo IPR availablePANTHERPTHR24073:SF897RAB38C, MEMBER OF RAS ONCOGENE FAMILY-RELATEDcoord: 1..40
NoneNo IPR availablePROSITEPS51419RABcoord: 1..44
score: 10.378
IPR001806Small GTPasePFAMPF00071Rascoord: 1..43
e-value: 1.2E-9
score: 38.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 1..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79893contigEcto-sp13_S_contig79893:446..577 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79893.19290.1mRNA_Ecto-sp13_S_contig79893.19290.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig79893 446..577 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig79893.19290.1 ID=prot_Ecto-sp13_S_contig79893.19290.1|Name=mRNA_Ecto-sp13_S_contig79893.19290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=44bp
QDRFGSIARAYYKEALGALLVYDIGRSSSFKTVQRWKGEIDEKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase