mRNA_Ecto-sp13_S_contig7989.19289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7989.19289.1
Unique NamemRNA_Ecto-sp13_S_contig7989.19289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7989.19289.1 vs. uniprot
Match: D8LRK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK9_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.600e-120
Identity = 225/264 (85.23%), Postives = 228/264 (86.36%), Query Frame = 1 
Query:    1 MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPLTSEGKPQQQPSTPSXXXXXXXXXXXXX------TSPTGAGYQHPRSVPSGHRDQGYQEADRRFASLLAKGNAETSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHHDDPGQRTEYARPGAYDFNARQEEYGGGAHNHAYPSRAAPHXXXXXXXXXXXXXXXFEEGGRGFPLXXXXXXXHPGVGPHAAAFQVTSPPAILALH 774
            MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVA QP T+EGKPQ       XXXXXXXXXXXXX      TSP GAGYQ PRSVPSGHRDQG+QEADRRFASLLAKGNAE SSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGH DDPGQRTEYARPGAYD NARQEEYG               XXXXXXXXXXXXXXX EEGGRGFPLXXXXXXXHPGVGPHAAAFQVTSPPA+LALH
Sbjct:    1 MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGKPQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNAEASSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDPGQRTEYARPGAYDPNARQEEYGXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXEEGGRGFPLXXXXXXXHPGVGPHAAAFQVTSPPAVLALH 263
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BLAST of mRNA_Ecto-sp13_S_contig7989.19289.1 vs. uniprot
Match: A0A6H5JL72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL72_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 2.040e-120
Identity = 218/254 (85.83%), Postives = 226/254 (88.98%), Query Frame = 1 
Query:    1 MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAAQPLTSEGKPQQQPSTPSXXXXXXXXXXXXX-------TSPTGAGYQHPRSVPSGHRDQGYQEADRRFASLLAKGNAETSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHHDDPGQRTEYARPGAYDFNARQEEYGGGAHNHAYPSRAAPHXXXXXXXXXXXXXXXFEEGGRGFPLXXXXXXXHPGVGPHAAAFQ 741
            MQPNVGTGN E ED+WDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVA QP T+EG+PQQ      XXXXXXXXXXXXX       TSP GAGYQ PRSVPSGHRDQG+QEADRRFASLLAKGN +TSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGH DD GQRTEYARP AYD NA+QEEYGG AHN++YPSRAAPH   XXXXXXXXXXXXFEEGGRGFPLXXXXXXXHPGVGPHAAAFQ
Sbjct:   19 MQPNVGTGNVE-EDVWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAAQGVAVQPHTAEGRPQQXXXXXXXXXXXXXXXXXXXXXXXXXXTSPAGAGYQRPRSVPSGHRDQGFQEADRRFASLLAKGNVKTSSGGGTAGVVRAGIPGPWEPVAGPTEGQQYGRAAGHQDDLGQRTEYARPEAYDPNAQQEEYGGEAHNYSYPSRAAPHHPQXXXXXXXXXXXXFEEGGRGFPLXXXXXXXHPGVGPHAAAFQ 271
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7989.19289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRK9_ECTSI1.600e-12085.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JL72_9PHAE2.040e-12085.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7989contigEcto-sp13_S_contig7989:2428..4806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size777
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_000180.1
Cds size777
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464070.105268-CDS-Ecto-sp13_S_contig7989:2427..26981681464070.105268-CDS-Ecto-sp13_S_contig7989:2427..2698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7989 2428..2698 -
1681464070.119131-CDS-Ecto-sp13_S_contig7989:3137..35201681464070.119131-CDS-Ecto-sp13_S_contig7989:3137..3520Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7989 3138..3520 -
1681464070.1292493-CDS-Ecto-sp13_S_contig7989:3871..39251681464070.1292493-CDS-Ecto-sp13_S_contig7989:3871..3925Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7989 3872..3925 -
1681464070.140934-CDS-Ecto-sp13_S_contig7989:4409..44451681464070.140934-CDS-Ecto-sp13_S_contig7989:4409..4445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7989 4410..4445 -
1681464070.1536212-CDS-Ecto-sp13_S_contig7989:4773..48061681464070.1536212-CDS-Ecto-sp13_S_contig7989:4773..4806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7989 4774..4806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7989.19289.1prot_Ecto-sp13_S_contig7989.19289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7989 2428..4806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7989.19289.1

>prot_Ecto-sp13_S_contig7989.19289.1 ID=prot_Ecto-sp13_S_contig7989.19289.1|Name=mRNA_Ecto-sp13_S_contig7989.19289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MQPNVGTGNAEGEDMWDDRAILKAFDDALNSHSRKPVDGVEARKWNKHAA
QGVAAQPLTSEGKPQQQPSTPSSTSRAAAAASGGGTSPTGAGYQHPRSVP
SGHRDQGYQEADRRFASLLAKGNAETSSGGGTAGVVRAGIPGPWEPVAGP
TEGQQYGRAAGHHDDPGQRTEYARPGAYDFNARQEEYGGGAHNHAYPSRA
APHHPQPPPHPPGGAAGGFEEGGRGFPLPPPPPPPHPGVGPHAAAFQVTS
PPAILALH*
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mRNA from alignment at Ecto-sp13_S_contig7989:2428..4806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7989.19289.1 ID=mRNA_Ecto-sp13_S_contig7989.19289.1|Name=mRNA_Ecto-sp13_S_contig7989.19289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7989:2428..4806- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCAAACGTTGGCACCGGCAATGCGGAGGTGAGTTCGGTCCATCG
TAGCATAAACGTCGTTGATCGAACAACTGCAAAAGCTGTCGCAAAAAAGG
GTGGGTCGCAGGTCGCAAGCATGCAACCATGGCAGCATGGCAGCGTCCAG
CGCGCAAGGCACTACAAGTAACGCCCAACTCAAGGCCATAGATGGATGGT
TGATCGTGTGCATGAGTGCATAACGTGAGAGGAGCGCTGCTGCCTTTGTC
CCGTTCCTCCCTTCTTGTCTTTCGCAATCGACCGCGCCTCTCTTCTTGAC
CTGACGACCTCAACGCCTGTCAACGCTCCGCATCGTTTTCAAAATTGCTC
CGTTTTTGTAGGGGGAAGACATGTGGGACGACCGCGCAATTCTGAAGGTG
AGACTTGTCTTGCGTAGTGTGTCGGAAGGGAGATTGATGTCCTCCGCAGT
GTTCCAAGGGCCTGGCTGTAGTGGTGTGTGTGTGTCCTTTGTTTATCCTA
ACAATGCGTTACCTTGGTAAAACGCCAGTACTTCGCCCAGGAGCACTTGT
GCACCTACGCGCATACGATGCTAGCACATGGATGTATGCCGTTGTGGTAA
TGCTGTATGCGTTGTATGCATACGACCATCTGTGGTTATAATAGCAGTGC
AGCCCCAACTGCCGGGAGCATACGAGCTTCCATTCACTGCTTTCGCTGTT
CCTACTCACAGCAGTCCAAGCAAACACCTATCCACAGCCGTCAGTCCCTC
ATTCCCCGCCCCCCCCCCGTCGCCTTGCTCCCTTGCTCGTTTCTCTCTCC
CTCCCTTTCGTTCCCGCGTGTCCCTTGCTGTTCTCTTGCTGCGTATGCGT
CTGCCTGCCCGTGACGTACTGCTCCTTGTAGGCCTTCGATGATGCCTTGA
ATTCGCACTCTCGCAAACCTGTGGATGGGGTAGAGGTACGTGCCAGCCTG
CCCGCACAGACCATTTTTGTTTATCGCTGCTGATGCTACTGACTATTGCT
GGAGCTTTTCAGCAATAAACGTCAACGGTTACAACACATCCGGTTCATGC
CCCTGACAGCAGTAGTGTAGTAGTCTACCCACTTGTTATAACGCACTCTT
GTTCTTGACCCTGATAGCGCCCACAGGTGATGGCTTCATCACATGTGTCG
CAAGGCATACGGCGGACCGCCGGTGCTTGATCCATCCGACAGCAGTAGTA
AAGCTTGTTGACGAAACCCTATCCTTAACCTTTGCCTTTTCTTGTCGCGC
ACCCCTATAACTATACATACCATCGCCCCGCAATAGGCTCGCAAGTGGAA
TAAGCACGCCGCGCAGGGGGTAGCCGCTCAACCCCTCACGTCGGAGGGCA
AACCGCAGCAGCAGCCGTCAACGCCGTCCAGCACCTCGCGTGCTGCTGCT
GCTGCGAGCGGCGGCGGCACCTCCCCGACTGGAGCCGGATACCAACACCC
CCGGTCAGTGCCGAGCGGGCACCGAGACCAAGGTTACCAAGAAGCCGACC
GGCGTTTTGCGTCCCTGTTGGCCAAGGGCAATGCCGAGACCTCTTCCGGA
GGGGGCACCGCGGGTGTCGTGCGGGCTGGTATCCCGGGACCCTGGGAGCC
CGTGGCTGGTCCGACCGAAGGACAGCAGTACGGTCGGGCAGCAGGTCACC
ACGATGACCCGGGGCAGCGGTGAGAACGCAGAATCCGGGTTGTTCGAGTG
TATATTGTGCTTTGGGACTGACAATTATCCGATGCGACCAAGGAGTTCCA
CTGCTGTGACGGTGTACACTGTACAGTGTACAGGTTCGTGCTCACCGGCG
GCAAGCATGGTGTTATCGTGTTATCCTGGTTGGTCACGACCAGACCAGGC
CTTGTGTTCGATGTCTTTGTCAGACCGGGAAGCTGCCAAGATGGCCCGCA
CAGATCCCGCTGTTTTGTTTTGTTTTCGACGCGTTCTGCCTGCTAGATAA
TTATATTTTCTAGTTGCTGCTGTTGCCGTCCTTAAGGTGATCCCTAGTCC
TACCCTCTTGGTAGCTTGCATCAGTGTTCGTGGGCACTCCTCGTCCTGAA
CCCTCTGTTTGGCTCTCAATTCATTGGCGTGCGGATGAAATCATGAAATC
GAACGCAGGACCGAGTACGCGAGGCCCGGGGCGTACGACTTCAACGCGCG
GCAGGAAGAATATGGCGGTGGGGCACATAACCACGCCTATCCCTCACGAG
CGGCGCCTCATCATCCACAACCGCCTCCTCACCCCCCGGGGGGCGCGGCA
GGTGGCTTTGAAGAGGGGGGGCGTGGATTTCCCCTCCCTCCGCCGCCGCC
GCCGCCGCATCCTGGAGTAGGTCCCCACGCGGCAGCCTTTCAGGTGACCT
CGCCACCGGCGATTCTTGCGCTTCATTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7989:2428..4806-

>mRNA_Ecto-sp13_S_contig7989.19289.1 ID=mRNA_Ecto-sp13_S_contig7989.19289.1|Name=mRNA_Ecto-sp13_S_contig7989.19289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7989:2428..4806- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCCAAACGTTGGCACCGGCAATGCGGAGGGGGAAGACATGTGGGA
CGACCGCGCAATTCTGAAGGCCTTCGATGATGCCTTGAATTCGCACTCTC
GCAAACCTGTGGATGGGGTAGAGGCTCGCAAGTGGAATAAGCACGCCGCG
CAGGGGGTAGCCGCTCAACCCCTCACGTCGGAGGGCAAACCGCAGCAGCA
GCCGTCAACGCCGTCCAGCACCTCGCGTGCTGCTGCTGCTGCGAGCGGCG
GCGGCACCTCCCCGACTGGAGCCGGATACCAACACCCCCGGTCAGTGCCG
AGCGGGCACCGAGACCAAGGTTACCAAGAAGCCGACCGGCGTTTTGCGTC
CCTGTTGGCCAAGGGCAATGCCGAGACCTCTTCCGGAGGGGGCACCGCGG
GTGTCGTGCGGGCTGGTATCCCGGGACCCTGGGAGCCCGTGGCTGGTCCG
ACCGAAGGACAGCAGTACGGTCGGGCAGCAGGTCACCACGATGACCCGGG
GCAGCGGACCGAGTACGCGAGGCCCGGGGCGTACGACTTCAACGCGCGGC
AGGAAGAATATGGCGGTGGGGCACATAACCACGCCTATCCCTCACGAGCG
GCGCCTCATCATCCACAACCGCCTCCTCACCCCCCGGGGGGCGCGGCAGG
TGGCTTTGAAGAGGGGGGGCGTGGATTTCCCCTCCCTCCGCCGCCGCCGC
CGCCGCATCCTGGAGTAGGTCCCCACGCGGCAGCCTTTCAGGTGACCTCG
CCACCGGCGATTCTTGCGCTTCATTAA
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