mRNA_Ecto-sp13_S_contig79811.19282.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79811.19282.1
Unique NamemRNA_Ecto-sp13_S_contig79811.19282.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79811.19282.1 vs. uniprot
Match: D7FIS1_ECTSI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.170e-15
Identity = 38/39 (97.44%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 EITLERRGEAGSVAWLTLNKPEKLNALSLSMVRGMSAAI 117
            EITLERRGEAGSVAWLTLNKPEKLNALSL+MVRGMSAAI
Sbjct:   19 EITLERRGEAGSVAWLTLNKPEKLNALSLTMVRGMSAAI 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79811.19282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIS1_ECTSI2.170e-1597.44Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79811contigEcto-sp13_S_contig79811:57..173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score76.6
Seed ortholog evalue2.8e-12
Seed eggNOG ortholog2880.D7FIS1
Model size117
KEGG rclassRC00004,RC00014,RC00137
KEGG koko:K05605
KEGG ReactionR03158,R05064
KEGG Pathwayko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG ModuleM00013
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016020,GO:0044424,GO:0044444,GO:0044464
Exons1
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGsCOG1024@1,KOG1684@2759
EC3.1.2.4
Cds size117
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464069.517261-CDS-Ecto-sp13_S_contig79811:56..1731681464069.517261-CDS-Ecto-sp13_S_contig79811:56..173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79811 57..173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79811.19282.1prot_Ecto-sp13_S_contig79811.19282.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79811 57..173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79811.19282.1

>prot_Ecto-sp13_S_contig79811.19282.1 ID=prot_Ecto-sp13_S_contig79811.19282.1|Name=mRNA_Ecto-sp13_S_contig79811.19282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
EITLERRGEAGSVAWLTLNKPEKLNALSLSMVRGMSAAI
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mRNA from alignment at Ecto-sp13_S_contig79811:57..173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79811.19282.1 ID=mRNA_Ecto-sp13_S_contig79811.19282.1|Name=mRNA_Ecto-sp13_S_contig79811.19282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79811:57..173- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATCACGCTGGAGAGAAGGGGCGAAGCGGGGAGTGTGGCGTGGTTGAC
CCTTAACAAACCTGAGAAGCTGAACGCGCTGAGCTTGAGCATGGTCCGGG
GGATGTCGGCAGCTATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79811:57..173-

>mRNA_Ecto-sp13_S_contig79811.19282.1 ID=mRNA_Ecto-sp13_S_contig79811.19282.1|Name=mRNA_Ecto-sp13_S_contig79811.19282.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79811:57..173- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAATCACGCTGGAGAGAAGGGGCGAAGCGGGGAGTGTGGCGTGGTTGAC
CCTTAACAAACCTGAGAAGCTGAACGCGCTGAGCTTGAGCATGGTCCGGG
GGATGTCGGCAGCTATT
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