mRNA_Ecto-sp13_S_contig79626.19261.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig79626.19261.1
Unique NamemRNA_Ecto-sp13_S_contig79626.19261.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: D8LKI4_ECTSI (GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI4_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.150e-17
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   16 KPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            KPVVCIVMGMAGSGKTTLLQRLNLYT E+GIKSYFINLDPAV
Sbjct:   51 KPVVCIVMGMAGSGKTTLLQRLNLYTAEKGIKSYFINLDPAV 92
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: X6M6W3_RETFI (GPN-loop GTPase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M6W3_RETFI)

HSP 1 Score: 70.5 bits (171), Expect = 4.990e-14
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:    1 ARTKKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            A   KKPV+C+V+GMAGSGKTTL+QRL+++  E  I SYFINLDPAV
Sbjct:   31 ATPSKKPVICLVIGMAGSGKTTLMQRLSMHVNENKIPSYFINLDPAV 77
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: A0A7S0DP97_9EUKA (GPN-loop GTPase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DP97_9EUKA)

HSP 1 Score: 66.2 bits (160), Expect = 1.580e-11
Identity = 30/46 (65.22%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    4 RTKKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            +++KKPV+CIV+GMAGSGKTTL+QRLN    E+ +  Y INLDPAV
Sbjct:   49 KSEKKPVMCIVIGMAGSGKTTLMQRLNATIHEKNVPGYIINLDPAV 94
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: A0A835YZW9_9STRA (GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZW9_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.130e-11
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   10 KKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            ++KPVVCIV+GMAGSGKTTLLQR+NL       + Y+INLDPAV
Sbjct:   38 RRKPVVCIVLGMAGSGKTTLLQRINLQMNSSDKQGYYINLDPAV 81
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: A0A0S4IST9_BODSA (GPN-loop GTPase n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IST9_BODSA)

HSP 1 Score: 63.2 bits (152), Expect = 1.960e-10
Identity = 27/43 (62.79%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 KKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            K+P+V +V+GMAG+GKTTL+ RL  Y+ E+G++SYFINLDPA+
Sbjct:   27 KQPLVILVVGMAGTGKTTLVHRLQHYSAEQGLRSYFINLDPAL 69
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: A0A7S3IG67_9SPIT (GPN-loop GTPase (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IG67_9SPIT)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-10
Identity = 27/45 (60.00%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    7 TKKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            TKKKP+V IV+GMAGSGKTT + +L  + +E+G ++Y +NLDPAV
Sbjct:   34 TKKKPLVLIVLGMAGSGKTTFVNKLTSFLSEQGKRTYNVNLDPAV 78
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: W6L0V0_9TRYP (GPN-loop GTPase n=1 Tax=Phytomonas sp. isolate Hart1 TaxID=134013 RepID=W6L0V0_9TRYP)

HSP 1 Score: 62.8 bits (151), Expect = 2.620e-10
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   13 KKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            K+PVV +V+GMAG+GKTTL+  L  Y  E+GI+SYFINLDPAV
Sbjct:   21 KQPVVILVIGMAGTGKTTLVHTLQNYALEKGIRSYFINLDPAV 63
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: W6KJU2_9TRYP (GPN-loop GTPase n=1 Tax=Phytomonas sp. isolate EM1 TaxID=134006 RepID=W6KJU2_9TRYP)

HSP 1 Score: 62.4 bits (150), Expect = 3.640e-10
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:   13 KKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            K+PVV +V+GMAG+GKTTL+  L  Y T +GI+SYFINLDPAV
Sbjct:   25 KQPVVILVVGMAGTGKTTLVHALQNYATGKGIRSYFINLDPAV 67
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: L8GIS8_ACACA (GPN-loop GTPase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIS8_ACACA)

HSP 1 Score: 61.6 bits (148), Expect = 7.110e-10
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 1 
Query:   10 KKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPA 138
            KKKPVVCIV+GMAGSGKTTL+QRLN +   +    Y INLDPA
Sbjct:   28 KKKPVVCIVIGMAGSGKTTLMQRLNAHLHMQKQPPYVINLDPA 70
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BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Match: A0A7S3RDM7_EMIHU (GPN-loop GTPase (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RDM7_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 4.090e-9
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 ARTKKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV 141
            A   ++PV CIV+GMAGSGKTTL+QRLN +  E     Y INLDPAV
Sbjct:   28 AGATRRPVACIVLGMAGSGKTTLMQRLNSHLHEAKRPYYLINLDPAV 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig79626.19261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LKI4_ECTSI1.150e-1795.24GPN-loop GTPase n=1 Tax=Ectocarpus siliculosus Tax... [more]
X6M6W3_RETFI4.990e-1468.09GPN-loop GTPase n=1 Tax=Reticulomyxa filosa TaxID=... [more]
A0A7S0DP97_9EUKA1.580e-1165.22GPN-loop GTPase n=1 Tax=Amorphochlora amoebiformis... [more]
A0A835YZW9_9STRA2.130e-1168.18GPN-loop GTPase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A0S4IST9_BODSA1.960e-1062.79GPN-loop GTPase n=1 Tax=Bodo saltans TaxID=75058 R... [more]
A0A7S3IG67_9SPIT2.000e-1060.00GPN-loop GTPase (Fragment) n=1 Tax=Strombidium inc... [more]
W6L0V0_9TRYP2.620e-1067.44GPN-loop GTPase n=1 Tax=Phytomonas sp. isolate Har... [more]
W6KJU2_9TRYP3.640e-1067.44GPN-loop GTPase n=1 Tax=Phytomonas sp. isolate EM1... [more]
L8GIS8_ACACA7.110e-1069.77GPN-loop GTPase n=1 Tax=Acanthamoeba castellanii s... [more]
A0A7S3RDM7_EMIHU4.090e-961.70GPN-loop GTPase (Fragment) n=2 Tax=Emiliania huxle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig79626contigEcto-sp13_S_contig79626:472..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D8LKI4
Preferred nameGPN1
Model size141
KEGG koko:K00700,ko:K06883,ko:K19513
KEGG ReactionR02110
KEGG Pathwayko00500,ko01100,ko01110,map00500,map01100,map01110
KEGG ModuleM00565
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005856,GO:0005874,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007275,GO:0008150,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034622,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048285,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051169,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051641,GO:0051649,GO:0061458,GO:0065003,GO:0070013,GO:0071840,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1903047,GO:1990114
Exons1
EggNOG free text desc.GTPase activity
EggNOG OGsKOG1532@1,KOG1532@2759
EC2.4.1.18
Cds size141
COG Functional cat.KLT
CAZyCBM48,GH13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464067.825867-CDS-Ecto-sp13_S_contig79626:471..6121681464067.825867-CDS-Ecto-sp13_S_contig79626:471..612Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig79626 472..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig79626.19261.1prot_Ecto-sp13_S_contig79626.19261.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig79626 472..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig79626.19261.1

>prot_Ecto-sp13_S_contig79626.19261.1 ID=prot_Ecto-sp13_S_contig79626.19261.1|Name=mRNA_Ecto-sp13_S_contig79626.19261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
ARTKKKPVVCIVMGMAGSGKTTLLQRLNLYTTEEGIKSYFINLDPAV
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mRNA from alignment at Ecto-sp13_S_contig79626:472..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig79626.19261.1 ID=mRNA_Ecto-sp13_S_contig79626.19261.1|Name=mRNA_Ecto-sp13_S_contig79626.19261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79626:472..612+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGCACAAAGAAGAAGCCCGTGGTGTGCATCGTCATGGGCATGGCCGG
GAGCGGGAAGACCACCCTACTGCAGAGGCTGAACCTCTACACGACGGAGG
AGGGCATCAAGAGCTACTTCATCAACCTGGACCCGGCTGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig79626:472..612+

>mRNA_Ecto-sp13_S_contig79626.19261.1 ID=mRNA_Ecto-sp13_S_contig79626.19261.1|Name=mRNA_Ecto-sp13_S_contig79626.19261.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig79626:472..612+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCGCACAAAGAAGAAGCCCGTGGTGTGCATCGTCATGGGCATGGCCGG
GAGCGGGAAGACCACCCTACTGCAGAGGCTGAACCTCTACACGACGGAGG
AGGGCATCAAGAGCTACTTCATCAACCTGGACCCGGCTGTC
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