mRNA_Ecto-sp13_S_contig795.19243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig795.19243.1
Unique NamemRNA_Ecto-sp13_S_contig795.19243.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5JT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT71_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.670e-31
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD----LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHTQ VQDVDH EG D M GGAMPSQL RLLDVLDS+       L GNPW EPPESIV KG+KNIRGYFEDL+AEP
Sbjct:   72 DHTQQVQDVDHNEGSDSMPGGAMPSQLRRLLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEP 147          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.060e-29
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHTQNVQD D  +GG GMSGG+MP QLCRLLDVL+ A+  LDGNPWAEPPESIV KG K++R YFEDL+AEP
Sbjct:   65 DHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVLERAKIVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEP 136          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 9.750e-29
Identity = 58/75 (77.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLD---SARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHTQNVQDV H EGGD M GGAMPSQLCRLL VLD        L GNPWAEPPESIVAKG K+IRGYFEDL+AEP
Sbjct:   43 DHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEP 117          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.330e-28
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS---DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHTQ+VQD+D  E GD MSGG MPSQLCRLLDVLD   S    L GNPW EPPES+VAKG K+IRGYFEDL+AEP
Sbjct:  326 DHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEP 400          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.170e-27
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS----DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAE 215
            DHTQNVQDV+H +GGD MSGG MPSQLCRLLD+L+S  +     L+ NPWAEPPESIVAKG+K++RGYFEDL A+
Sbjct:   92 DHTQNVQDVNH-DGGDSMSGGPMPSQLCRLLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFAD 165          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.990e-27
Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS---DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHT  +QD+ H EG  GMSGG +PSQLCRLLDVLD A      L+ NPWAEPPESIVAKG K+IRGYFEDL+AEP
Sbjct:  184 DHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEP 258          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.420e-26
Identity = 54/83 (65.06%), Postives = 58/83 (69.88%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD------------LDGNPWAEPPESIVAKGVKNIRGYFEDLHAE 215
            DHTQNVQDVDH E G  M GG MPSQLCRLLD+ DS  +             L  NPWAEPPESIVAKG K+IRGYFEDL+AE
Sbjct:  254 DHTQNVQDVDHKERGHSMPGGPMPSQLCRLLDIFDSVEAQGLNDTGIGPSLSLSENPWAEPPESIVAKGPKSIRGYFEDLYAE 336          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 6.720e-26
Identity = 51/75 (68.00%), Postives = 55/75 (73.33%), Query Frame = 3
Query:    6 HTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD----LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            HT NV+D  H E    M GG+ P QLCRLLDVLD A  +    LD NPWAEPPESIVAKG KNIRGYFEDL+AEP
Sbjct:  255 HTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEP 329          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.800e-24
Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD------LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHTQN +D+ H EG   MSGG MPSQLCRLLDVLD  +        L  NPW EPPE IV KG K +RGYFEDL+AEP
Sbjct:  109 DHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEP 186          
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 8.650e-23
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 3
Query:    3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
            DHT N +DV   E    MSGG +PS+L RLL+ LD A +DL GNPWAEPPESIV KG+++IRGYFEDL+AEP
Sbjct:  518 DHTCNAEDVGQ-ERAKRMSGGTIPSELRRLLETLDGADTDLGGNPWAEPPESIVTKGMESIRGYFEDLYAEP 588          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5JT71_9PHAE1.670e-3175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI2.060e-2975.00LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FZA1_ECTSI9.750e-2977.33LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LF46_ECTSI1.330e-2873.33LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L650_9PHAE2.170e-2770.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC3_ECTSI2.990e-2770.67LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI1.420e-2665.06LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUD0_ECTSI6.720e-2668.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KSZ8_9PHAE2.800e-2462.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS7_ECTSI8.650e-2365.28LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig795contigEcto-sp13_S_contig795:7146..7946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size220
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.2663727-UTR-Ecto-sp13_S_contig795:7145..71881681464066.2663727-UTR-Ecto-sp13_S_contig795:7145..7188Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig795 7146..7188 -
1681464066.29316-UTR-Ecto-sp13_S_contig795:7931..79461681464066.29316-UTR-Ecto-sp13_S_contig795:7931..7946Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig795 7932..7946 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.2757156-CDS-Ecto-sp13_S_contig795:7188..73051681464066.2757156-CDS-Ecto-sp13_S_contig795:7188..7305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig795 7189..7305 -
1681464066.2844076-CDS-Ecto-sp13_S_contig795:7886..79311681464066.2844076-CDS-Ecto-sp13_S_contig795:7886..7931Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig795 7887..7931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig795.19243.1prot_Ecto-sp13_S_contig795.19243.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig795 7189..7931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig795.19243.1

>prot_Ecto-sp13_S_contig795.19243.1 ID=prot_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MFKMSTTSREVTACQVGQCPASSAGCLTSSTVLDRTSMVTHGLNHQSRSL
PKV*
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mRNA from alignment at Ecto-sp13_S_contig795:7146..7946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig795.19243.1 ID=mRNA_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:7146..7946- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGACCATACCCAGAATGTTCAAGATGTCGACCACATCGAGGGAGGTGAC GGCATGTCAGGTATGTCAGGTATGCCTACATTTTGTACTGTGTGCCAAGG GGTACCCTCGACAATGTCAACTGCCTGCCTGCGAGTGGAACTAGCGGTGT TCGGCGCAGGTTGGCATACCGCAATGCCAAACGGGCGTACGTGGTGTAGG TTGTCCTGGATGGCAGCAGGAGTTCCATAGTGCACTATGCTACTCAGGTT GTCGGAGCTCGTATGGGGAGTGAACCATGTGAGGAATGATCGTCGGGGTT GAAGGGTAGGCTCAGTCTCGGATATGTGGAACCCATGAGGGACCCGATAC ATAGCGCAACATCTCGTAGCATACGTGGGACGTCCGCTGGCGGTACCTAC GGGCTGTCGATGATGGGATCGCTGAACCTGTTGTAGGTTCACTATTTCGT TCGGTAACGTCTCAACGTGGTCACCCATACGGCATCAACCACAGCAGAAG CTAAGTAGCATACGCGGGAACTGCGAACATTACGTGAGGTAGGTTATTGC TGGAGTCGCTACCCTCTGGCCTCGTGATCACTCTTGGCGCGGGCAATGAT AATCATCCCATCAAGTGTGCGTGCTCTACGTCGCTCTATAGGTGGGGCAA TGCCCAGCCAGCTCTGCCGGTTGCTTGACGTCCTCGACAGTGCTCGATCG GACCTCGATGGTAACCCATGGGCTGAACCACCAGAGTCGATCGTTGCCAA AGGTGTGAAAAATATCAGAGGGTATTTCGAAGACCTGCATGCTGAGCCCT G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig795:7146..7946-

>mRNA_Ecto-sp13_S_contig795.19243.1 ID=mRNA_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:7146..7946- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAAGATGTCGACCACATCGAGGGAGGTGACGGCATGTCAGGTGGG
GCAATGCCCAGCCAGCTCTGCCGGTTGCTTGACGTCCTCGACAGTGCTCG
ATCGGACCTCGATGGTAACCCATGGGCTGAACCACCAGAGTCGATCGTTG
CCAAAGGTGTGA
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