mRNA_Ecto-sp13_S_contig795.19243.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5JT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT71_9PHAE) HSP 1 Score: 118 bits (295), Expect = 1.670e-31 Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD----LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHTQ VQDVDH EG D M GGAMPSQL RLLDVLDS+ L GNPW EPPESIV KG+KNIRGYFEDL+AEP
Sbjct: 72 DHTQQVQDVDHNEGSDSMPGGAMPSQLRRLLDVLDSSVGSHARRLGGNPWTEPPESIVVKGLKNIRGYFEDLYAEP 147
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI) HSP 1 Score: 118 bits (296), Expect = 2.060e-29 Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHTQNVQD D +GG GMSGG+MP QLCRLLDVL+ A+ LDGNPWAEPPESIV KG K++R YFEDL+AEP
Sbjct: 65 DHTQNVQDEDQDKGGCGMSGGSMPGQLCRLLDVLERAKIVLDGNPWAEPPESIVDKGRKSMRSYFEDLYAEP 136
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI) HSP 1 Score: 116 bits (291), Expect = 9.750e-29 Identity = 58/75 (77.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLD---SARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHTQNVQDV H EGGD M GGAMPSQLCRLL VLD L GNPWAEPPESIVAKG K+IRGYFEDL+AEP
Sbjct: 43 DHTQNVQDVHHKEGGDIMPGGAMPSQLCRLLVVLDRLSGVNLALLGNPWAEPPESIVAKGPKSIRGYFEDLYAEP 117
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 116 bits (290), Expect = 1.330e-28 Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS---DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHTQ+VQD+D E GD MSGG MPSQLCRLLDVLD S L GNPW EPPES+VAKG K+IRGYFEDL+AEP
Sbjct: 326 DHTQDVQDIDPKERGDSMSGGTMPSQLCRLLDVLDPVPSRYVGLGGNPWTEPPESVVAKGPKSIRGYFEDLYAEP 400
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5L650_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L650_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.170e-27 Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS----DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAE 215
DHTQNVQDV+H +GGD MSGG MPSQLCRLLD+L+S + L+ NPWAEPPESIVAKG+K++RGYFEDL A+
Sbjct: 92 DHTQNVQDVNH-DGGDSMSGGPMPSQLCRLLDLLESREAGRHLSLNSNPWAEPPESIVAKGLKSVRGYFEDLFAD 165
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI) HSP 1 Score: 112 bits (280), Expect = 2.990e-27 Identity = 53/75 (70.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARS---DLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHT +QD+ H EG GMSGG +PSQLCRLLDVLD A L+ NPWAEPPESIVAKG K+IRGYFEDL+AEP
Sbjct: 184 DHTHYLQDIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEP 258
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI) HSP 1 Score: 110 bits (275), Expect = 1.420e-26 Identity = 54/83 (65.06%), Postives = 58/83 (69.88%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD------------LDGNPWAEPPESIVAKGVKNIRGYFEDLHAE 215
DHTQNVQDVDH E G M GG MPSQLCRLLD+ DS + L NPWAEPPESIVAKG K+IRGYFEDL+AE
Sbjct: 254 DHTQNVQDVDHKERGHSMPGGPMPSQLCRLLDIFDSVEAQGLNDTGIGPSLSLSENPWAEPPESIVAKGPKSIRGYFEDLYAE 336
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI) HSP 1 Score: 108 bits (270), Expect = 6.720e-26 Identity = 51/75 (68.00%), Postives = 55/75 (73.33%), Query Frame = 3
Query: 6 HTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD----LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
HT NV+D H E M GG+ P QLCRLLDVLD A + LD NPWAEPPESIVAKG KNIRGYFEDL+AEP
Sbjct: 255 HTLNVEDARHEEASHSMQGGSFPRQLCRLLDVLDRAEREVDLNLDDNPWAEPPESIVAKGAKNIRGYFEDLYAEP 329
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: A0A6H5KSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSZ8_9PHAE) HSP 1 Score: 103 bits (258), Expect = 2.800e-24 Identity = 49/78 (62.82%), Postives = 54/78 (69.23%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSD------LDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHTQN +D+ H EG MSGG MPSQLCRLLDVLD + L NPW EPPE IV KG K +RGYFEDL+AEP
Sbjct: 109 DHTQNAEDIGHDEGTQRMSGGPMPSQLCRLLDVLDDIQQGKFQSLKLGTNPWVEPPEPIVVKGPKAVRGYFEDLYAEP 186
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 8.650e-23 Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 3
Query: 3 DHTQNVQDVDHIEGGDGMSGGAMPSQLCRLLDVLDSARSDLDGNPWAEPPESIVAKGVKNIRGYFEDLHAEP 218
DHT N +DV E MSGG +PS+L RLL+ LD A +DL GNPWAEPPESIV KG+++IRGYFEDL+AEP
Sbjct: 518 DHTCNAEDVGQ-ERAKRMSGGTIPSELRRLLETLDGADTDLGGNPWAEPPESIVTKGMESIRGYFEDLYAEP 588 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig795.19243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig795.19243.1 >prot_Ecto-sp13_S_contig795.19243.1 ID=prot_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp MFKMSTTSREVTACQVGQCPASSAGCLTSSTVLDRTSMVTHGLNHQSRSLback to top mRNA from alignment at Ecto-sp13_S_contig795:7146..7946- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig795.19243.1 ID=mRNA_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:7146..7946- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig795:7146..7946- >mRNA_Ecto-sp13_S_contig795.19243.1 ID=mRNA_Ecto-sp13_S_contig795.19243.1|Name=mRNA_Ecto-sp13_S_contig795.19243.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig795:7146..7946- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |