prot_Ecto-sp13_S_contig7946.19238.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7946.19238.1
Unique Nameprot_Ecto-sp13_S_contig7946.19238.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length316
Homology
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: A0A6H5L1F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 2.240e-102
Identity = 181/287 (63.07%), Postives = 205/287 (71.43%), Query Frame = 0
Query:   40 AALLAYGADGTPPVLPDDPPSPTWWPLEESMVARGSRLPIYTFVSQFTGEHESALLHGK---DGSREAPSPKQVEADVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDG--KRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDG---PLPYLRYRPFT--DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVR--GYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 314
            AAL+   A G PPVLP+DPPSPTWWPLEES  ARG RLPIYTF SQF GEHE  L +G    D +REA SP+QV ADV FLRGLNLQGL+ GGA  AP+ R MVSPA       K+ RYDEDNLPTPATLVADLKAT NFKSAITDMDDDG   PLPYL Y  F   DE+HEDD+ Q+IF T + L+E IA  E EVV+P   E  +    +  E TL++ AQL ALKQYVLKQRVFYVLIHT+R +H         SS  +LLALGVSP TGNLVGV+A+Q C  +
Sbjct:    2 AALVVDEAGGEPPVLPEDPPSPTWWPLEESFTARGRRLPIYTFASQFAGEHELVLFNGDGNDDQNREALSPEQV-ADVDFLRGLNLQGLEAGGAATAPLRRFMVSPAXXXXXXXKKSRYDEDNLPTPATLVADLKATGNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSEDLAEAIAEAESEVVDPEADEGDMGAEAYR-EMTLRSRAQLTALKQYVLKQRVFYVLIHTDR-RHDAELADKDMSSDVILLALGVSPATGNLVGVIAIQTCHNL 285          
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: A0A6H5LG80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG80_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.070e-37
Identity = 102/222 (45.95%), Postives = 120/222 (54.05%), Query Frame = 0
Query:  139 MVSPAVAT--DGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDG---PLPYLRYRPFT--DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCI-------------------------------------------EDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVS-SSHALLLALGVSPVTGNLVGVVAMQ 309
            MVSPA A    GK+ RYDEDNLPTPATLVADLK   NFKSAITDMDDDG   PLPYL Y  F   DE+HEDD+ Q+IF T   L+E I+  E EVV+    E  +                                                  E  L + AQL ALKQ+VLK+RVFYVLI  +R ++        SS  +LLA+GVSP TGNLVGV+A+Q
Sbjct:    1 MVSPAAAAAGGGKKSRYDEDNLPTPATLVADLKEARNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSRGLAEAISEEESEVVDVEADEGDMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEIALGSRAQLTALKQHVLKRRVFYVLIRADRRQYADPDDEDMSSDVILLAMGVSPATGNLVGVIAIQ 222          
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: D0L311_GORB4 (Uncharacterized protein n=1 Tax=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 / NBRC 16047 / NCTC 10667) TaxID=526226 RepID=D0L311_GORB4)

HSP 1 Score: 59.3 bits (142), Expect = 2.660e-6
Identity = 61/210 (29.05%), Postives = 84/210 (40.00%), Query Frame = 0
Query:  113 DVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFT--------DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 314
            D  FL  L   GL   GA D PI+             R  +    +PT   ++  L   A F S  T   D   +PY  Y P          D++H D + QH+F T+                        E +    +D  Q       LK +V+   + YVLIH  R +H    +  S   +L A+GVSPVTGNL+GVV  Q+C  +
Sbjct:  188 DAEFLASL-AGGLVAYGATDVPIYPYT----------RELHSAGQIPTGREVLRSL-GVARFCSTQTADLDATSMPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTY------------------------EDNGGIPDDRHQR------LKSHVIDGHLTYVLIHEPREQHD--DFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNL 353          
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: UPI001CC0B2F1 (hypothetical protein n=1 Tax=Gordonia bronchialis TaxID=2054 RepID=UPI001CC0B2F1)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-5
Identity = 60/210 (28.57%), Postives = 82/210 (39.05%), Query Frame = 0
Query:  113 DVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFT--------DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 314
            D  FL  L   GL   GA D PI+                +    +PT   ++  L   A F S  T   D   +PY  Y P          D++H D + QH+F T                         E +    +D  Q       LK +V+   + YVLIH  R +H    +  S   +L A+GVSPVTGNL+GVV  Q+C  +
Sbjct:   20 DAEFLASL-AGGLVAYGATDVPIYPYTCE----------LHSAGQIPTGREVLRSL-GVARFCSTQTADLDATSMPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTD------------------------EDNGGIPDDRHQR------LKSHVIDGHLTYVLIHEPREQHD--DFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNL 185          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1F3_9PHAE2.240e-10263.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LG80_9PHAE1.070e-3745.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0L311_GORB42.660e-629.05Uncharacterized protein n=1 Tax=Gordonia bronchial... [more]
UPI001CC0B2F11.390e-528.57hypothetical protein n=1 Tax=Gordonia bronchialis ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7946contigEcto-sp13_S_contig7946:4658..6687 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7946.19238.1mRNA_Ecto-sp13_S_contig7946.19238.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7946 4658..6720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7946.19238.1 ID=prot_Ecto-sp13_S_contig7946.19238.1|Name=mRNA_Ecto-sp13_S_contig7946.19238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MIGCIHQFLTREYLPHPLAHLLLNTGGSIFTRPRTRPPTAALLAYGADGT
PPVLPDDPPSPTWWPLEESMVARGSRLPIYTFVSQFTGEHESALLHGKDG
SREAPSPKQVEADVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKR
PRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFTDEMH
EDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNL
AQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTG
NLVGVVAMQLCRGML*
back to top