mRNA_Ecto-sp13_S_contig7946.19238.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7946.19238.1
Unique NamemRNA_Ecto-sp13_S_contig7946.19238.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: A0A6H5L1F3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F3_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 6.710e-102
Identity = 181/287 (63.07%), Postives = 205/287 (71.43%), Query Frame = 1 
Query:  118 AALLAYGADGTPPVLPDDPPSPTWWPLEESMVARGSRLPIYTFVSQFTGEHESALLHGK---DGSREAPSPKQVEADVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDG--KRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDG---PLPYLRYRPFT--DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVR--GYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 942
            AAL+   A G PPVLP+DPPSPTWWPLEES  ARG RLPIYTF SQF GEHE  L +G    D +REA SP+QV ADV FLRGLNLQGL+ GGA  AP+ R MVSPA       K+ RYDEDNLPTPATLVADLKAT NFKSAITDMDDDG   PLPYL Y  F   DE+HEDD+ Q+IF T + L+E IA  E EVV+P   E  +    +  E TL++ AQL ALKQYVLKQRVFYVLIHT+R +H         SS  +LLALGVSP TGNLVGV+A+Q C  +
Sbjct:    2 AALVVDEAGGEPPVLPEDPPSPTWWPLEESFTARGRRLPIYTFASQFAGEHELVLFNGDGNDDQNREALSPEQV-ADVDFLRGLNLQGLEAGGAATAPLRRFMVSPAXXXXXXXKKSRYDEDNLPTPATLVADLKATGNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSEDLAEAIAEAESEVVDPEADEGDMGAEAYR-EMTLRSRAQLTALKQYVLKQRVFYVLIHTDR-RHDAELADKDMSSDVILLALGVSPATGNLVGVIAIQTCHNL 285
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BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: A0A6H5LG80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LG80_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.800e-37
Identity = 102/222 (45.95%), Postives = 120/222 (54.05%), Query Frame = 1 
Query:  415 MVSPAVAT--DGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDG---PLPYLRYRPFT--DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCI-------------------------------------------EDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVS-SSHALLLALGVSPVTGNLVGVVAMQ 927
            MVSPA A    GK+ RYDEDNLPTPATLVADLK   NFKSAITDMDDDG   PLPYL Y  F   DE+HEDD+ Q+IF T   L+E I+  E EVV+    E  +                                                  E  L + AQL ALKQ+VLK+RVFYVLI  +R ++        SS  +LLA+GVSP TGNLVGV+A+Q
Sbjct:    1 MVSPAAAAAGGGKKSRYDEDNLPTPATLVADLKEARNFKSAITDMDDDGSGAPLPYLGYLVFACADEVHEDDENQYIFATSRGLAEAISEEESEVVDVEADEGDMGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGEIALGSRAQLTALKQHVLKRRVFYVLIRADRRQYADPDDEDMSSDVILLAMGVSPATGNLVGVIAIQ 222
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BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: D0L311_GORB4 (Uncharacterized protein n=1 Tax=Gordonia bronchialis (strain ATCC 25592 / DSM 43247 / BCRC 13721 / JCM 3198 / KCTC 3076 / NBRC 16047 / NCTC 10667) TaxID=526226 RepID=D0L311_GORB4)

HSP 1 Score: 58.5 bits (140), Expect = 5.210e-6
Identity = 61/210 (29.05%), Postives = 84/210 (40.00%), Query Frame = 1 
Query:  337 DVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFT--------DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 942
            D  FL  L   GL   GA D PI+             R  +    +PT   ++  L   A F S  T   D   +PY  Y P          D++H D + QH+F T+                        E +    +D  Q       LK +V+   + YVLIH  R +H    +  S   +L A+GVSPVTGNL+GVV  Q+C  +
Sbjct:  188 DAEFLASL-AGGLVAYGATDVPIYPYT----------RELHSAGQIPTGREVLRSL-GVARFCSTQTADLDATSMPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTY------------------------EDNGGIPDDRHQR------LKSHVIDGHLTYVLIHEPREQHD--DFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNL 353
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BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Match: UPI001CC0B2F1 (hypothetical protein n=1 Tax=Gordonia bronchialis TaxID=2054 RepID=UPI001CC0B2F1)

HSP 1 Score: 54.7 bits (130), Expect = 2.720e-5
Identity = 60/210 (28.57%), Postives = 82/210 (39.05%), Query Frame = 1 
Query:  337 DVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKRPRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFT--------DEMHEDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNLAQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTGNLVGVVAMQLCRGM 942
            D  FL  L   GL   GA D PI+                +    +PT   ++  L   A F S  T   D   +PY  Y P          D++H D + QH+F T                         E +    +D  Q       LK +V+   + YVLIH  R +H    +  S   +L A+GVSPVTGNL+GVV  Q+C  +
Sbjct:   20 DAEFLASL-AGGLVAYGATDVPIYPYTCE----------LHSAGQIPTGREVLRSL-GVARFCSTQTADLDATSMPYPGYTPSVSSGPEPDNDQIHTDPEGQHLFLTD------------------------EDNGGIPDDRHQR------LKSHVIDGHLTYVLIHEPREQHD--DFWFSEWVMLFAVGVSPVTGNLIGVVGHQVCHNL 185
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7946.19238.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L1F3_9PHAE6.710e-10263.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LG80_9PHAE2.800e-3745.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D0L311_GORB45.210e-629.05Uncharacterized protein n=1 Tax=Gordonia bronchial... [more]
UPI001CC0B2F12.720e-528.57hypothetical protein n=1 Tax=Gordonia bronchialis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7946contigEcto-sp13_S_contig7946:4658..6720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size981
Hectar predicted targeting categoryother localisation
Exons2
Cds size948
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.1126904-CDS-Ecto-sp13_S_contig7946:4657..47331681464066.1126904-CDS-Ecto-sp13_S_contig7946:4657..4733Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7946 4658..4733 +
1681464066.123796-CDS-Ecto-sp13_S_contig7946:5815..66871681464066.123796-CDS-Ecto-sp13_S_contig7946:5815..6687Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7946 5816..6687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464066.134923-UTR-Ecto-sp13_S_contig7946:6687..67201681464066.134923-UTR-Ecto-sp13_S_contig7946:6687..6720Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7946 6688..6720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7946.19238.1prot_Ecto-sp13_S_contig7946.19238.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7946 4658..6687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7946.19238.1

>prot_Ecto-sp13_S_contig7946.19238.1 ID=prot_Ecto-sp13_S_contig7946.19238.1|Name=mRNA_Ecto-sp13_S_contig7946.19238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=316bp
MIGCIHQFLTREYLPHPLAHLLLNTGGSIFTRPRTRPPTAALLAYGADGT
PPVLPDDPPSPTWWPLEESMVARGSRLPIYTFVSQFTGEHESALLHGKDG
SREAPSPKQVEADVGFLRGLNLQGLQVGGACDAPIWRVMVSPAVATDGKR
PRYDEDNLPTPATLVADLKATANFKSAITDMDDDGPLPYLRYRPFTDEMH
EDDDKQHIFETFDVLSENIALMEPEVVNPAISERALEHSVWCIEDTLQNL
AQLAALKQYVLKQRVFYVLIHTERVKHGVRGYVSSSHALLLALGVSPVTG
NLVGVVAMQLCRGML*
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mRNA from alignment at Ecto-sp13_S_contig7946:4658..6720+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7946.19238.1 ID=mRNA_Ecto-sp13_S_contig7946.19238.1|Name=mRNA_Ecto-sp13_S_contig7946.19238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7946:4658..6720+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGGATGCATACATCAGTTCCTTACACGCGAATACCTCCCCCACCC
GCTGGCACACCTTCTTCTCAACACAGGTAAGTGCCTTGTTTCGTGCTTTT
GTATGCGTATCCAAGGGGATCGCGAGAGATTGATTGTTGCCGCAGCAGCA
CAGCCCAGAAGGTCCAGACGCGGGGGTCTGTCACCGCCCCCGTCCCCATT
CAGGAACGTGGAAGTATGGCGTATTTTATGCAGGTGTTATTCATAGACTG
CATGCCAAGTGGAACGAACTGAAGGTAGTGGGGATGTGGTAAATTAGGGA
GAGCAAACAGGTCCCCAGCATCACGATCCACACCACAGGCAGTAGTAGCC
CATGCAGGCGACGACTTTCATCTCGTCAATGGCCCGTGCGTGTGTGTGCC
TACAGACGCTGGACACGGAGGGGACATAGTACCAACTGTATACTCCTGGA
TGCCGAAAAGAGAACAATGAACGTGAGCATGCGGTATGTACATGCATATG
TTCGTACACAGAAGGATTGTCTTTTATTTTAGCATCGAATGTCAGAGTAT
GTGTCCACGTTTAAAACGCACACACATTTTGTACCGCAGCAGTATGTATC
CCTTGAGGACGCCGTCCTAGAAGAGAACGCCCTCGGGTCCACCCCAAAAA
CAACCTACGACCGGTGCACCACAAACCTTGAGAACGCCCCGGGAGTCCAT
TTTGTTTTTTTATTTGTTTTTGTAATCGCCCCCATGTCGCCCTCTCACGG
GTCCAAGATCGTGATCTTTAGCAGCACTGCGTTCTGTTGTAGCTGGACTG
AGGCTGACGTGTTTTCATTGTTTCATTGGCCAGCCGGTAAGCGCGGTTGA
TGGCAATACCATAGACACACATAAACACACACACATAAACGGCCGCGAGT
TTTCATGTAAGCCTAATGTTTCGTCGAGGCCATGCACGTGTAGAGGGGGC
AAGAATGGAATGGGGAGGAACACTCATTCGTGTGTGAGAGAGCAGGGAGA
TGACTCTAGATTCACTTTGTATATCCATGGACAAAGCCCCCGACACGCAA
CTGCCCAAGAAAACTGCGCGCTCCGCGGCTCAACACGGGCACCGGCGGAC
ACAAAACCAACCATATGCATCCGCCCCCCAACCCCACCGCTTCCCCGCCC
TCCCCCAGGCGGGAGCATCTTCACGCGGCCCCGAACAAGGCCTCCGACGG
CGGCCCTTTTGGCTTACGGAGCTGACGGTACGCCACCCGTCCTCCCGGAT
GATCCGCCGTCTCCAACTTGGTGGCCGCTCGAGGAGTCCATGGTCGCGCG
CGGGAGCCGTTTACCGATCTACACGTTCGTGTCACAGTTCACTGGAGAAC
ACGAGTCCGCGCTCCTGCATGGTAAGGATGGCAGCCGCGAGGCGCCTTCA
CCGAAGCAAGTCGAGGCTGACGTGGGTTTTCTGCGCGGGTTGAACCTCCA
AGGGCTCCAGGTGGGTGGGGCGTGTGACGCCCCAATCTGGAGGGTCATGG
TGTCTCCAGCGGTAGCAACCGATGGCAAAAGGCCACGATACGACGAGGAC
AACCTACCAACCCCCGCCACGCTCGTCGCAGACCTCAAGGCGACCGCTAA
CTTTAAGAGTGCTATCACCGACATGGATGATGACGGTCCACTGCCTTACC
TGCGGTACCGGCCGTTTACCGACGAGATGCACGAGGACGACGACAAACAA
CATATCTTCGAGACGTTCGACGTTTTGTCAGAGAACATAGCGTTGATGGA
ACCTGAGGTAGTCAACCCGGCGATCAGTGAACGTGCGCTGGAACATAGCG
TGTGGTGCATTGAGGACACGTTGCAGAACTTGGCACAGCTCGCCGCCCTG
AAGCAGTACGTGCTGAAGCAGCGAGTGTTCTATGTTCTGATACACACGGA
ACGGGTCAAACATGGTGTACGCGGTTACGTTTCGAGCTCTCATGCGCTAC
TCCTGGCGCTGGGGGTGTCGCCCGTCACCGGAAATCTGGTCGGCGTCGTC
GCAATGCAATTGTGTAGAGGCATGTTGTAGCTGAGCTTTATCGTAAGCCT
GAATTCAGCTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7946:4658..6720+

>mRNA_Ecto-sp13_S_contig7946.19238.1 ID=mRNA_Ecto-sp13_S_contig7946.19238.1|Name=mRNA_Ecto-sp13_S_contig7946.19238.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7946:4658..6720+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTGGATGCATACATCAGTTCCTTACACGCGAATACCTCCCCCACCC
GCTGGCACACCTTCTTCTCAACACAGGCGGGAGCATCTTCACGCGGCCCC
GAACAAGGCCTCCGACGGCGGCCCTTTTGGCTTACGGAGCTGACGGTACG
CCACCCGTCCTCCCGGATGATCCGCCGTCTCCAACTTGGTGGCCGCTCGA
GGAGTCCATGGTCGCGCGCGGGAGCCGTTTACCGATCTACACGTTCGTGT
CACAGTTCACTGGAGAACACGAGTCCGCGCTCCTGCATGGTAAGGATGGC
AGCCGCGAGGCGCCTTCACCGAAGCAAGTCGAGGCTGACGTGGGTTTTCT
GCGCGGGTTGAACCTCCAAGGGCTCCAGGTGGGTGGGGCGTGTGACGCCC
CAATCTGGAGGGTCATGGTGTCTCCAGCGGTAGCAACCGATGGCAAAAGG
CCACGATACGACGAGGACAACCTACCAACCCCCGCCACGCTCGTCGCAGA
CCTCAAGGCGACCGCTAACTTTAAGAGTGCTATCACCGACATGGATGATG
ACGGTCCACTGCCTTACCTGCGGTACCGGCCGTTTACCGACGAGATGCAC
GAGGACGACGACAAACAACATATCTTCGAGACGTTCGACGTTTTGTCAGA
GAACATAGCGTTGATGGAACCTGAGGTAGTCAACCCGGCGATCAGTGAAC
GTGCGCTGGAACATAGCGTGTGGTGCATTGAGGACACGTTGCAGAACTTG
GCACAGCTCGCCGCCCTGAAGCAGTACGTGCTGAAGCAGCGAGTGTTCTA
TGTTCTGATACACACGGAACGGGTCAAACATGGTGTACGCGGTTACGTTT
CGAGCTCTCATGCGCTACTCCTGGCGCTGGGGGTGTCGCCCGTCACCGGA
AATCTGGTCGGCGTCGTCGCAATGCAATTGTGTAGAGGCATGTTGTAG
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