mRNA_Ecto-sp13_S_contig7923.19209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7923.19209.1
Unique NamemRNA_Ecto-sp13_S_contig7923.19209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 553 bits (1424), Expect = 8.110e-186
Identity = 382/393 (97.20%), Postives = 384/393 (97.71%), Query Frame = 1
Query:   16 QLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXXAAGGETPRGGGRSNWDSSSPAPTADGSSSLYSPSSDGYG----RRGGYGGSRTP 1182
            +LQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISR+QVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXX   GETPRGGGRSNWDSSSPAPTADG SSL SPSSDGYG    RRGGYGGSRTP
Sbjct:  536 ELQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRSQVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXXXXXGETPRGGGRSNWDSSSPAPTADGGSSLGSPSSDGYGYGYGRRGGYGGSRTP 928          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A6H5JFI1_9PHAE (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFI1_9PHAE)

HSP 1 Score: 498 bits (1281), Expect = 7.340e-167
Identity = 355/365 (97.26%), Postives = 356/365 (97.53%), Query Frame = 1
Query:    1 QVYVSQLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQV--KIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXXAAGGETPRGGGR 1068
            +VYVSQLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQV  KIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       GGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXXAAGGETPRGGGR
Sbjct:  432 EVYVSQLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVEVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGVGNQTPLGAGGXXXXXXXXXXXXXXXXXXXXAAGGETPRGGGR 796          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A7S2VA26_9STRA (50S ribosomal protein L24, chloroplastic n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VA26_9STRA)

HSP 1 Score: 207 bits (527), Expect = 4.160e-57
Identity = 119/264 (45.08%), Postives = 168/264 (63.64%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEIN---ASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGE---VPGTPYTM--QTPMHG 759
            V +SQL+E+ E +TG D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G  +  RP+E+RGKRN+ S+RA  +D Q NQL   + V VVEG+H G   T+K ++R+ LFLHS+T +++AG+F V++RS +LAG  ++ +   G  G       S +       R R+D ++ KTV++  G  KG +G V + T THV+VELH++LKKVT++  +V ++GD+ GA   NQ   P +      P TP+    QTPMHG
Sbjct:  107 VRISQLRESAETTTGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIAREARPEELRGKRNAMSQRAVALDVQGNQLRSGDTVNVVEGRHKGKAATVKRMNRSQLFLHSQTRSEHAGVFVVKSRSCVLAGSRSQSRPGAGDGGATPWTPQSHQTGRPGAGRKRDDGLIGKTVRIQAGNWKGFIGTVSDTTGTHVEVELHARLKKVTVTHERVHVIGDKFGA-TENQTSNPAVNPQVMAPTTPFVAAGQTPMHG 369          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A7S2V7W2_9STRA (Transcription elongation factor SPT5 n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V7W2_9STRA)

HSP 1 Score: 207 bits (527), Expect = 3.910e-55
Identity = 119/264 (45.08%), Postives = 168/264 (63.64%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEIN---ASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGE---VPGTPYTM--QTPMHG 759
            V +SQL+E+ E +TG D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G  +  RP+E+RGKRN+ S+RA  +D Q NQL   + V VVEG+H G   T+K ++R+ LFLHS+T +++AG+F V++RS +LAG  ++ +   G  G       S +       R R+D ++ KTV++  G  KG +G V + T THV+VELH++LKKVT++  +V ++GD+ GA   NQ   P +      P TP+    QTPMHG
Sbjct:  562 VRISQLRESAETTTGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIAREARPEELRGKRNAMSQRAVALDVQGNQLRSGDTVNVVEGRHKGKAATVKRMNRSQLFLHSQTRSEHAGVFVVKSRSCVLAGSRSQSRPGAGDGGATPWTPQSHQTGRPGAGRKRDDGLIGKTVRIQAGNWKGFIGTVSDTTGTHVEVELHARLKKVTVTHERVHVIGDKFGA-TENQTSNPAVNPQVMAPTTPFVAAGQTPMHG 824          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: B7G376_PHATC (Transcription elongation factor SPT5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G376_PHATC)

HSP 1 Score: 205 bits (521), Expect = 2.550e-54
Identity = 124/268 (46.27%), Postives = 165/268 (61.57%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAA-----VGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGE-----VPGTPYTM--QTPMHG 759
            V  SQL+E+ EV++G D LQGYELYDLV+L      NEVGV+ RV RED  V+NN G V+ +RP+E+RGKRNS S+RA  +D Q NQ+   + V VVEG H G   TIK + R  LFLHS+T T +AGIF VR+RS +LAG   + + A     V       + ++         R+D ++ KTV++  GQ KG +G V +AT THV+VELHS+LKKV + R +V + GD+ GA    Q Q  ++        P TP+    QTPMHG
Sbjct:  583 VRTSQLRESAEVASGQDKLQGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGIVREIRPEELRGKRNSTSQRAVALDVQGNQIRASDSVNVVEGPHKGKTATIKRMSRAQLFLHSQTRTDHAGIFVVRSRSCVLAGTRTQARGATPDSGVSPFATPQSQSRGGPQPGRGKRDDGLIGKTVRIQAGQWKGYLGTVADATATHVQVELHSRLKKVMVVRERVAVAGDKFGA---TQEQNRMVDVNPNPIAPTTPFVAAGQTPMHG 847          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A7S2GRM5_9STRA (50S ribosomal protein L24, chloroplastic (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GRM5_9STRA)

HSP 1 Score: 189 bits (481), Expect = 8.340e-53
Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGA 678
            V  SQLQE+ EV++G D L GYEL+DLV+L      NEVGV+ RV RE+  V+NN G V+ VRP+E+RGKRNS S+RA  +D Q NQ+   ++V + EG H G   TIK + R  LFL+S+T T++AGIF VR+RS +L+G   R  AA     +             R   D ++ KTVKV  G+ KG +G V +AT THV+VELHS++KKV + R +V +VGD+ GA
Sbjct:   51 VRTSQLQESAEVASGQDKLAGYELHDLVVLSGGGSANEVGVIVRVGREEFTVINNHGIVREVRPEELRGKRNSSSQRAVALDVQGNQIRCGDLVSIAEGPHKGKTATIKRMSRAQLFLYSQTRTEHAGIFVVRSRSCVLSGSRARPAAADTRQSQ----GGXXXXXXXRRGEDGLVGKTVKVQSGKWKGYLGCVSDATATHVQVELHSRMKKVMVVRERVVVVGDKFGA 275          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A7S2LCY0_9STRA (Transcription elongation factor SPT5 n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LCY0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 9.350e-53
Identity = 124/265 (46.79%), Postives = 164/265 (61.89%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAV------GYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGE--VPGTPYTM--QTPMH 756
            V  SQLQE+ E+++G D L GYEL+DLV+L      NEVGV+ RV RE+  V+NN G V+ VRP+E+RGKRNS SRRA  +D Q NQ+ V + V V EG H G   TIK ++R  LFL+S+T T++AGIF VR+RS +L+G  NR           G+ G   A  +   +K    R D ++ KTV+V  GQ KG +G V +AT THV VELHS+LKKV + R +V +VGD+ G+      Q+   G    P TP+     TPMH
Sbjct:  654 VRTSQLQESAEIASGQDKLAGYELHDLVVLSGGGSTNEVGVIVRVGREEFTVINNHGIVREVRPEELRGKRNSSSRRAVALDVQGNQIRVGDSVNVAEGPHKGKTATIKQMNRAQLFLYSQTRTEHAGIFVVRSRSCVLSGARNRSSMETANANGNGFKGGGGAGGRG--IK----REDGLIGKTVRVSSGQWKGYIGTVADATATHVSVELHSRLKKVMVLRERVAVVGDKYGSTDNPDRQQQYNGGGMAPTTPFLQGGATPMH 912          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A7S1GNB8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GNB8_CYCTE)

HSP 1 Score: 195 bits (496), Expect = 1.060e-52
Identity = 118/265 (44.53%), Postives = 160/265 (60.38%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNR-----GQAAVGYMGEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQK---PVIGEVPGTPYTM--QTPMH 756
            V  SQL+E+ E+++G D L GYELYDLV+L      NEVGV+ RV RED  VVNN G  + VRP+E+RGK+N +S RA  VD Q NQ+ V + V V EG H G   TIK ++RT LFL+S+T T+NAGIF VR+RS +LAG  ++     G   V       + +          R+D ++ KTV++  GQ KG +G V +AT +HV+VELHS+LKKV ++R +V + GD+ G+           P     P TP+     TPMH
Sbjct:   79 VRTSQLRESAEMASGQDKLAGYELYDLVVLSGGGSTNEVGVIVRVGREDFTVVNNHGISREVRPEELRGKQNQRSNRALAVDVQANQIRVGDQVTVTEGPHKGKTATIKRMNRTQLFLYSQTRTENAGIFVVRSRSVMLAGSRSQRSSGGGDGGVSPFSTPRSQSSGPPGGARGKRDDALIGKTVRIQSGQWKGYLGTVADATASHVQVELHSRLKKVMVTRERVVVAGDKFGSTENTSRDNNPVPTSMIAPTTPFVAGGATPMH 343          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A1Z5KC20_FISSO (Transcription elongation factor SPT5 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KC20_FISSO)

HSP 1 Score: 193 bits (491), Expect = 2.680e-50
Identity = 118/260 (45.38%), Postives = 161/260 (61.92%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAG--RMNRGQAAVGYMGEI---NASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTPMH 756
            V  SQL+E+ E+++G D L GYELYDLV+L      NEVGV+ RV RED  V+NN G  + VRP+E+RGKRNS S RA  +D Q NQ+   ++V V EG H G   TIK + R  LFLHS+T +++AGIF VR+RS +L+G  + +RG    G +       + +    V    N++D ++ KTV+V  GQ KG +G V + T THV+VELHS+LKKV + R +V +VGD+ GA +  + Q     E       M TPMH
Sbjct:  600 VRTSQLRESAEIASGQDRLSGYELYDLVVLSGGGSANEVGVIVRVGREDFTVINNHGLAREVRPEELRGKRNSTSVRAVALDVQGNQIRCGDIVNVAEGPHKGKAATIKRMSRAQLFLHSQTRSEHAGIFVVRSRSCVLSGSRQQSRGSGIDGGVSPFATPQSQSTRGPVGGRGNKDDGLIGKTVRVQAGQWKGYIGTVADTTATHVQVELHSRLKKVLVVREKVIVVGDKFGATSA-ESQAIDSMESNHISQAMATPMH 858          
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Match: A0A6S8Z740_9STRA (Transcription elongation factor SPT5 n=9 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8Z740_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.780e-50
Identity = 108/232 (46.55%), Postives = 152/232 (65.52%), Query Frame = 1
Query:    4 VYVSQLQETPEVSTGLDSLQGYELYDLVMLG----PNEVGVVTRVNREDLEVVNNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAGSKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYMGEINASAKN---DIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVKVELHSKLKKVTISRNQVKIVGDQTGA 678
            V +SQLQE+ EV++G D L GYEL+DLV+L      NEVG + RV RE+  V+NN G ++ VRP+E+RGKRNS S RA  +D Q NQ+ V + V+V EG H G   TIK + R  LFL+S+T T+NAG+F VR+RS +L+G   + + A G     +    N    I      ++D +++KTV++  G  KG +G V +AT THV+VELHS+LKK+ + R +V +VGD+ GA
Sbjct:  570 VRISQLQESAEVASGQDKLAGYELHDLVVLSGGGSTNEVGCIVRVGREEFTVINNHGIIREVRPEELRGKRNSSSGRAVALDVQGNQIRVGDTVKVAEGPHKGKSATIKRMSRAQLFLYSQTLTKNAGVFVVRSRSCVLSGNRVQNREAPGGASPFSTPRSNGNQQIGARGGRKDDGLISKTVRIQAGNWKGYLGTVSDATPTHVQVELHSRLKKIMVLRERVAVVGDKFGA 801          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7923.19209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI29_ECTSI8.110e-18697.20Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A6H5JFI1_9PHAE7.340e-16797.26Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
A0A7S2VA26_9STRA4.160e-5745.0850S ribosomal protein L24, chloroplastic n=1 Tax=A... [more]
A0A7S2V7W2_9STRA3.910e-5545.08Transcription elongation factor SPT5 n=1 Tax=Amphi... [more]
B7G376_PHATC2.550e-5446.27Transcription elongation factor SPT5 n=2 Tax=Phaeo... [more]
A0A7S2GRM5_9STRA8.340e-5348.0350S ribosomal protein L24, chloroplastic (Fragment... [more]
A0A7S2LCY0_9STRA9.350e-5346.79Transcription elongation factor SPT5 n=2 Tax=Lepto... [more]
A0A7S1GNB8_CYCTE1.060e-5244.53Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A1Z5KC20_FISSO2.680e-5045.38Transcription elongation factor SPT5 n=2 Tax=Fistu... [more]
A0A6S8Z740_9STRA2.780e-5046.55Transcription elongation factor SPT5 n=9 Tax=Chaet... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7923contigEcto-sp13_S_contig7923:1081..7164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score558.9
Seed ortholog evalue2.1e-156
Seed eggNOG ortholog2880.D7FI29
Model size1317
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
Cds size1317
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7923.19209.1prot_Ecto-sp13_S_contig7923.19209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7923 1081..7164 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.7725654-CDS-Ecto-sp13_S_contig7923:1080..12381681464063.7725654-CDS-Ecto-sp13_S_contig7923:1080..1238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 1081..1238 -
1681464063.7886312-CDS-Ecto-sp13_S_contig7923:1611..17031681464063.7886312-CDS-Ecto-sp13_S_contig7923:1611..1703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 1612..1703 -
1681464063.800384-CDS-Ecto-sp13_S_contig7923:2392..27151681464063.800384-CDS-Ecto-sp13_S_contig7923:2392..2715Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 2393..2715 -
1681464063.8121126-CDS-Ecto-sp13_S_contig7923:3508..36041681464063.8121126-CDS-Ecto-sp13_S_contig7923:3508..3604Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 3509..3604 -
1681464063.8233185-CDS-Ecto-sp13_S_contig7923:3998..41121681464063.8233185-CDS-Ecto-sp13_S_contig7923:3998..4112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 3999..4112 -
1681464063.8341792-CDS-Ecto-sp13_S_contig7923:4881..49831681464063.8341792-CDS-Ecto-sp13_S_contig7923:4881..4983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 4882..4983 -
1681464063.844947-CDS-Ecto-sp13_S_contig7923:5788..59621681464063.844947-CDS-Ecto-sp13_S_contig7923:5788..5962Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 5789..5962 -
1681464063.8560092-CDS-Ecto-sp13_S_contig7923:6557..66801681464063.8560092-CDS-Ecto-sp13_S_contig7923:6557..6680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 6558..6680 -
1681464063.8652272-CDS-Ecto-sp13_S_contig7923:7029..71641681464063.8652272-CDS-Ecto-sp13_S_contig7923:7029..7164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7923 7030..7164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7923.19209.1

>prot_Ecto-sp13_S_contig7923.19209.1 ID=prot_Ecto-sp13_S_contig7923.19209.1|Name=mRNA_Ecto-sp13_S_contig7923.19209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=439bp
QVYVSQLQETPEVSTGLDSLQGYELYDLVMLGPNEVGVVTRVNREDLEVV
NNSGNVKRVRPQEIRGKRNSQSRRAFVVDTQQNQLEVDNVVEVVEGQHAG
SKGTIKHIDRTTLFLHSRTHTQNAGIFPVRARSALLAGRMNRGQAAVGYM
GEINASAKNDIVKDFRNRNDEMLAKTVKVIRGQHKGLMGQVVEATDTHVK
VELHSKLKKVTISRNQVKIVGDQTGAYAGNQFQKPVIGEVPGTPYTMQTP
MHGSQTPMHGSQTPMHGSQTPMHGSQTPMHGSQTPVHGSQTPIHGSQTPI
HGSQTPMGGSGGGVGNQTPLGAGGQTPLHGSQTPMHGAQTPIHGAAGGET
PRGGGRSNWDSSSPAPTADGSSSLYSPSSDGYGRRGGYGGSRTPQSESYS
PMSSSPGGGSVQNGSYTPVSGRNTHSSRSVGRDEGGVG*
back to top

mRNA from alignment at Ecto-sp13_S_contig7923:1081..7164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7923.19209.1 ID=mRNA_Ecto-sp13_S_contig7923.19209.1|Name=mRNA_Ecto-sp13_S_contig7923.19209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6084bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7923:1081..7164- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTACGTTTCCCAGCTGCAGGAGACGCCCGAGGTCAGCACGGGCCT CGACTCCCTGCAAGGGTACGAGCTGTACGACCTCGTCATGCTCGGCCCGA ACGAGGTCGGCGTTGTGACCAGGGTCAACCGGGAGGTGAGAGAAGAAGAA ACGCGGCCACTTTATTCTTGTTGGTGCTTACGCGAAACCGAAAAGCTCGT CGGTCATACGTGTGTGTGGATGTTACACCAGGTGTTGGTTGTAAATCTTA ATTTTCCCTCTTTGGAGTAGTAATGAAAATACTTTCATTCTTTCCGCTGA GACACTACGAGTACATCTCTATGTCCACAGACGAGAGTCACGGAGTAGCA ATGAAAGATGTTAGCTATGAACCCATAGCGTCAGCTGAGTCACTTGCAAA CAAATCGATGCCGTCGGCGGCATCACTTTTTCTTTTTCTTTTTCTCACAT GGTTTTTTTTTGTTCGTCTTGTGTTCGCGTACAGGACCTGGAAGTGGTGA ACAACTCCGGGAACGTGAAGCGAGTGCGTCCTCAGGAGATCCGTGGCAAG AGGAACTCGCAAAGCCGCAGGGCGTTCGTTGTGGACACTCAGCAGAACCA GCTAGAGGTATAGTCGTGACTTTTCGGGTGTACGAGAGTGTGTGCTTGTA GGCTAGTGGCGTCTTTCCCGCAGGTCCTACTGCTGTTATCCGCTGCGTTT GATCGCTCACTCTGATGGATTCGTTTTGCCCATGGTCTGTGGGACTTGTG TGCGTTGCCCCAGGAATCTCAAGTTTTTTCCTTTGTTCCACACTTAAAGG CAGTTCTTGCGAAAGTTTTCTTCGCTCGCAAAACATCCCCGTGGAAATAG AGCGAGTTTTTTCAACTGTGGGCGTCAAGCATACGCGCCACTGGTGGCTG GCGGTCCTCGGGCGTGCGCGGTAATGTAACGACGGTGCCCCTGCGTGCTG CGTGCCCCCGAGAAAGAAGCGTGACAGAAGACTCGCTTCCGCCAGCGAAA CATGTCCGGAAGCACGAAAACAGACAAAATGGTACACATACATCTTAATG TGTGATAGCAGAAATTGTTGAATGGAGCATACAACGAAGGATACACTTTG TTGTGTTTACATCTCGTTGGTCAGCGGGGTAGCGCGGTCGATGATGGCAA CAGCAAAGATAATCACGCACCCCCGGCGCTTTTTTATTTTTTTATTCACC AGGTGGACAACGTGGTAGAGGTGGTGGAAGGCCAGCACGCCGGGTCCAAG GGCACCATCAAGCACATCGACCGCACCACCCTCTTCCTTCATTCCAGGAC GCACACTCAGAACGCCGGCATCTTTCCGGTCCGGGCTAGGAGCGCGCTTC TCGCCGGGAGGATGAACAGGGGGCAGGTGTGTTCGTCTTGTCTATGTTGT GTTGCTACGGTAAGGGTCCATTATTCAACCGTTTCTAGATTCTTGCGACA GGAGCGATTGAACAGGGGGCAGGCGTGTTCCTCCCGTCTAGTGTGTGACA GAAATGATGGAAAAATCGCGTAGTGGTCAGGGAGGGGCACGAAGTCTTTT TTCATGTGATACAGCAGTGGCGTCGATATATGTGGACCGGGCTGTAGATG TTTGGTGTTGGAGGTGTTGTGCGTATGCGTCTATTTGTGTGTAGTGCTGA TGTGGTAGCGGATGTAGATGCATGTGCTCGTCGCTTTGATTTCGTGTTGG CCGGATGTATGCATGCTGTACGTTGTCGCGGGGAGGATGAACCCGGGGGC AGGTGTGTGTGTGTGCGTAGGATACCACACCCCCTAGACCGAACTTCAAA ACCCGATACCTTGTGCAGCAAAAAAAGTGGCGGTGCCGAAAATATGGCGC CTCCCGCCGAGACCTTTCGAAATTGTGTTTTTTTGACTTGGAATCTTGGG TACTAGAGCTTTGAAACCGGGGTGTGGTATCTTGTGCGAAGAGCGGCAGT CTACTGTGTTGTAATCGTCGATAGCGCACTCGGGCTTTTGGTTTTGGGTG GCCGTATGTTTGTTGTTGTCATGTTTGTTTTGTAGTCACTGCTGCTGCTG CTGCTGCGCTGCTTTACGGGAAGCTTATTTCAGTGAAGCGGCGCAAATGT TGCGCTTTTGATGGATAAGCTGTGGTTGAGTGGCGGACGAAAAATCTATC TCTAACTTTTTTTTTCAACTGTTACCGAGAGGCGGCGGTGGGATACATGG GCGAGATCAACGCGTCGGCGAAGAACGACATCGTGAAGGACTTCAGAAAC CGGAACGACGAGATGCTCGCCAAGACTGTCAAGGTGCTGTACCTGTTCAT ACATATCACCCCCCCACTTGAGTTCTTTGCAGTTAAGCAAGTTCATGCTA AACATTATGTCAAACATGAGCACTATAAGTAGTGGACCTTGTACAGTGCC TGAGTACAGAGATTTTACGGGCACTAATCCGGACACCGGCACTTTTCAGA GTACAGAACGACTTGGTATCGCAGCGTGTGCGAGCCGAAAAAACTATCCC GGCACTATGCAGGGCCCACTGCTGTACTGACAGGCGGCTGTAACCCACCT ATGTAGCGGCAATTTGTCGCCTGCGAAAGGAACTACTATAAGAACCCCAG TCTCAGCCTCGACCAAAACTGTAAGAGGTAGGCGGCTTCTGTATTTTTCT GTTTTCCCGCTGTCGACCTACCTACCGAGCTACCGCGTGGAACAGCAGCA CAACCCACTTCTCGAGGCAGTGAGTGATTTTGGATGTTCCTTCGCTCCCA CTGTCGGAGGTTTAGGCCTGTCAAGGACGCTCACAGGTTGGCTGCTGATA GGCTGTGCTGCGGCTTGTGTTTTGGGCTAGCGTCTCTTTTGGCCTGTTTT TATCTTTCCGTGTGTCTCGCTTTTCTTCTCTGTTTTTCATTGTTTTGGTT TCGCTCTTGTGTTGATTTTTTTCGCCCGAATGAAATTTGGCTGTGACTCA CGTGTTACTTTCGTGTTGGAATGTATTTGTACCCGATTCGAAGAAATGTT TGTCATTGTCGTCCCTGTTTTTGTTGCTCGTTCCCTTGCATGATCGATGA AGGTGATCAGAGGGCAGCACAAGGGTCTGATGGGTCAGGTCGTGGAAGCT ACCGACACACACGTGAAGGTGGAGCTACACTCCAAGCTCAAGAAGGTCAC CATCTCCAGGAACCAGGTCTGTTGTTCGTTTCCTTTATTTTTTTCTCACG ATAAACAAATGTTATGAAGGCTGGACCCCTTCTCCAGTCCTACCCCCCCC CCCATAGATAGAGACAGAGAGAGAGACACAGAGAGAGAGACAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGGGAGGGAAATAGAAAGAGAGTCGTGGT AGAAATTTTTTTGCCGGGCGATAGAGAGTCGTGGTAGAAGTTGTTTTGCC GGGGCGATATGTGATGGTTTGTGACAGCCCTGTCGCTTCGCTTCCTCTAT CTGCACATGCCGTCTATTTGTCATTGAATCACCATGAACCTGCTTTCTTG GGAACCAAATAGTAATTCATCTACCTCTACAACGCATAATTGCGCGGCAA TTCGTTTCAGGTAAAGATTGTGGGCGACCAGACGGGTGCGTACGCGGGGA ACCAGTTCCAGAAGCCTGTCATCGGAGAGGTACCCGGGACGCCCTACACC ATGCAGGTCTGTACGGCAAACTCATTATTTTAGGAAATGGACATAGAAAT GACAGAAACACTACATTACCCGTTCGACGTATTGGGCTTTCTTTTTGCTT TCGGGGAACTGAAGCTCGTGTTTGGCTTTGTGATATGGTCGGGATAGGCG TAGCCGTTAGGGAGGGAGAGGCGGAAGGTTCGTTCGGTAGTATGTTGTTG TGTGTTTGCTCCGTCTCTTGGTGTGCGATTGGCGGCCCTCTGGCTCGTTT CGGCAGAGAGAAAGGTAAATATGTACTTGGTTGAAATAGCCTTTCGGTGT CAGTTGCAGTGGCCACCGAATGGCTGCGAGGACGTTTCGATTGTTGCTCC GATGCATGGACTCTTCTTGTGGCGTGTGCAGTTCATGGCTGCTGCGGTGG CCGGTTGTCCTTAATTACGGCATGAAGTGGTTAGTCCAGCAGATGGGAAA ACGATCACCAACCAAATAATATAGCGAGAGGGGCAGTAGGAAAACAACGT TTCGTTTTGGTTTTTACGTCATTCGTGGTGTACTTTGTTTTTCTCTTCTC TTCCCAACGTCGACTCCGTTGCTCTGTTCCTTGCCCCCCGCTCTCTCTCT CTCTCTCTCTCCCCCGTCCCTCCGTTCCCTCCCCTCGTGCTGCTGGTGCT GTTGTTATCGTTGCTCCCGCATCTGCTGGCGCTGCGGCTGATCCTGCGGC TGGTGGTGGTGGTGGTTGCTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCT GTTCTTGCGGTTGCTGCTCCTACCGTCGCCACGTGATTACACAACACAGA CTCCCATGCACGGGTCCCAGACCCCAATGCACGGGTCCCAGACCCCAATG CACGGCTCTCAGACCCCAATGCACGGCTCTCAGACCCCAATGCACGGCTC TCAGACCCCAGTCCACGGCTCCCAGACCCCCATCCACGGCTCCCAGACCC CGATTCACGGGTCCCAGACTCCCATGGGTGGCAGCGGCGGCGGGGTGGGG AACCAGACCCCGCTGGGTGCGGGAGGGCAGACGCCTCTCCACGGGTCGCA GACCCCCATGCACGGGGCGCAGACGCCCATCCACGGGGCCGCCGGGGGGG AAACCCCTCGAGGGGGCGGGAGGTGAGAGGGGGGGAAGTGGGGCACGGCA GTGGTTTTTGTTTGCTTATCACGAAAACGTTTTTTTCGGAAGGAGGGGGG GGATGGGGCACATCGTGTGGTTTTGCTGATCACGACATTTTTTTTGTTCC TTTATTTTTTGTAAGATGGAAATGTTCATGTGTCCATCCATCCTCTGGAA GGTGGTATTGTGTTTGGTCTGTCGAAATCACGTTCGGTTGATTTCCGGCG TCGTCTCTTTGAGTCGTGTGCTTGGTTTCATTCGCAGGGTTTTGGAGAGG TTTGTCCGAGCGGGCGGGGGGGGGGGGGGGGCATTATTCTTGTGTGACCC TGGTTTTTTATCATGATGTTTTGTTGTCTTGTTGTGTGTTGTGTGGAGAT TGTGTCGCATGGGGTATTTTGTTCACTTTTTAGTGTGCTGTGCGGAGATT GTGTCGCAGGGTTTTGGAAGGGTGGGGGGGAGAGATGATGCATTTCTCTA TCGGATATCGATGCCGTAAACGGTACATGGCACACACGGGGGCACACGCC TTCCGTCTCCATCTCGAGAAACTACTGTGCCAGGCAAAGATGTATAGTGC ATACGATTTTTGCAAGCTACGCGCGTGAAGATCTCATGTGTGACCCAGGA GCAATTTGGACACTTCTATTTAATCAATGACACCCGCGTTATTCTTTCAT GTGTGACTAAGGAGCAATTGGGACAGCTCGTCTCCGGCGCCGACGGCCGA CGGAAGTTCTTCCCTTTACAGCCCTTCCTCCGACGGCTATGGAAGGAGAG GAGGTGTGTGTGTGCTCGGGATATAGATGTGATGGTGGTGTGTGCTGGAA GACGTTCGTTGAAAGGGTTGTTGCAATTTTTTGTTTTTTGTATGAAAGCT GTTGTGTCGTTACAGTGTTGGCGTAGCAGTAGAAGCAGCCAGCGAGGGAA GCGATGTATTAGTGGCACAGTAGTAGTGGCGACAAACAGAACATAGTGAC GTGAAGGACTAGGTTTCAAGGTACTGTGGGTGAATAAACAATTCCAGGAA ACCTGTCCCTCCGGTAAATGTTTTCTTGTAGCCCTCCCCTCGCCGCCATG TCTTATTCGGTTTTGGGATTCCTGCGTTTTGGATTTCTGGCTCTCTGGCT GTCTTTTTCTTTTTTTCTGTCCTTAGGTTACGGAGGCTCGCGTACGCCGC AGTCTGAGAGCTACTCGCCCATGAGCAGCAGCCCCGGCGGCGGCAGCGTT CAGAACGGCTCCTACACCCCGGTGAGTGGGAGAAACACACACAGCAGTAG GAGTGTTGGAAGAGATGAGGGAGGAGTTGGCTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7923:1081..7164-

>mRNA_Ecto-sp13_S_contig7923.19209.1 ID=mRNA_Ecto-sp13_S_contig7923.19209.1|Name=mRNA_Ecto-sp13_S_contig7923.19209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7923:1081..7164- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGTACGTTTCCCAGCTGCAGGAGACGCCCGAGGTCAGCACGGGCCT
CGACTCCCTGCAAGGGTACGAGCTGTACGACCTCGTCATGCTCGGCCCGA
ACGAGGTCGGCGTTGTGACCAGGGTCAACCGGGAGGACCTGGAAGTGGTG
AACAACTCCGGGAACGTGAAGCGAGTGCGTCCTCAGGAGATCCGTGGCAA
GAGGAACTCGCAAAGCCGCAGGGCGTTCGTTGTGGACACTCAGCAGAACC
AGCTAGAGGTGGACAACGTGGTAGAGGTGGTGGAAGGCCAGCACGCCGGG
TCCAAGGGCACCATCAAGCACATCGACCGCACCACCCTCTTCCTTCATTC
CAGGACGCACACTCAGAACGCCGGCATCTTTCCGGTCCGGGCTAGGAGCG
CGCTTCTCGCCGGGAGGATGAACAGGGGGCAGGCGGCGGTGGGATACATG
GGCGAGATCAACGCGTCGGCGAAGAACGACATCGTGAAGGACTTCAGAAA
CCGGAACGACGAGATGCTCGCCAAGACTGTCAAGGTGATCAGAGGGCAGC
ACAAGGGTCTGATGGGTCAGGTCGTGGAAGCTACCGACACACACGTGAAG
GTGGAGCTACACTCCAAGCTCAAGAAGGTCACCATCTCCAGGAACCAGGT
AAAGATTGTGGGCGACCAGACGGGTGCGTACGCGGGGAACCAGTTCCAGA
AGCCTGTCATCGGAGAGGTACCCGGGACGCCCTACACCATGCAGACTCCC
ATGCACGGGTCCCAGACCCCAATGCACGGGTCCCAGACCCCAATGCACGG
CTCTCAGACCCCAATGCACGGCTCTCAGACCCCAATGCACGGCTCTCAGA
CCCCAGTCCACGGCTCCCAGACCCCCATCCACGGCTCCCAGACCCCGATT
CACGGGTCCCAGACTCCCATGGGTGGCAGCGGCGGCGGGGTGGGGAACCA
GACCCCGCTGGGTGCGGGAGGGCAGACGCCTCTCCACGGGTCGCAGACCC
CCATGCACGGGGCGCAGACGCCCATCCACGGGGCCGCCGGGGGGGAAACC
CCTCGAGGGGGCGGGAGGAGCAATTGGGACAGCTCGTCTCCGGCGCCGAC
GGCCGACGGAAGTTCTTCCCTTTACAGCCCTTCCTCCGACGGCTATGGAA
GGAGAGGAGGTTACGGAGGCTCGCGTACGCCGCAGTCTGAGAGCTACTCG
CCCATGAGCAGCAGCCCCGGCGGCGGCAGCGTTCAGAACGGCTCCTACAC
CCCGGTGAGTGGGAGAAACACACACAGCAGTAGGAGTGTTGGAAGAGATG
AGGGAGGAGTTGGCTAG
back to top