mRNA_Ecto-sp13_S_contig7920.19205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7920.19205.1
Unique NamemRNA_Ecto-sp13_S_contig7920.19205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 431 bits (1109), Expect = 2.300e-136
Identity = 207/210 (98.57%), Postives = 209/210 (99.52%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK 632
            WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAI+FVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQT+VDTVVVGAMGPPGGGRNHITPR LRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK
Sbjct: 2658 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIIFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTVVDTVVVGAMGPPGGGRNHITPRFLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK 2867          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: D7FT69_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 5.200e-133
Identity = 208/224 (92.86%), Postives = 209/224 (93.30%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQ--------------ALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK 632
            WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQ              AL QDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAI+FVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK
Sbjct: 2504 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQERVINRTVYPVLAQALPQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIIFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLNK 2727          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A835YLN5_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 315 bits (807), Expect = 9.160e-96
Identity = 146/208 (70.19%), Postives = 173/208 (83.17%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNL 626
            W ++LP   IP   T  +IVVP    AQ+  LL LLL  D+  +VCGPTGTGKS Y  + + Q+L QD+FK LTLGFSAKTSA MTQDIIDGKLDKRRKGV+GPP+GQ AIVFVDDLNMPEVETYGAQPPLELLRQ++D+GGWYNLK+MTWQ+IVDT ++ +MGPPGGGRN ++PRLLRHFN+LCF E+DD+TLTRIF TI+DWHF +
Sbjct: 1454 WSDLLPPDDIPLTTTFSEIVVPTEGMAQHGMLLQLLLGSDRPALVCGPTGTGKSVYAMRVLRQSLPQDRFKALTLGFSAKTSAAMTQDIIDGKLDKRRKGVFGPPLGQRAIVFVDDLNMPEVETYGAQPPLELLRQLVDSGGWYNLKEMTWQSIVDTTLLASMGPPGGGRNPVSPRLLRHFNLLCFAEYDDATLTRIFGTIMDWHFRV 1661          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A482SUL6_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUL6_9ARCH)

HSP 1 Score: 308 bits (788), Expect = 3.290e-93
Identity = 140/208 (67.31%), Postives = 170/208 (81.73%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNL 626
            W ++LP   I       +IVVPN YTAQ+N ++ LL+ R K  ++CGPTGTGKS YV+ +IT  L QDKFK L+LGFSAKTSANMTQDIIDGKLDKRRKGVYGPP GQ  I+F+DDLNMPEVETYGAQPP+EL+RQ+IDNGGWY+LK+ +W+ I+D+ ++ AMGP GGGRN +TPRLLRHFN+ CF EFDD+TL RIF TIV WHF++
Sbjct: 2178 WTDLLPAFTIAADTPFSNIVVPNNYTAQFNFMIHLLVPRKKHVLMCGPTGTGKSVYVYNSITTGLPQDKFKSLSLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPQGQHCIIFIDDLNMPEVETYGAQPPIELIRQLIDNGGWYDLKEKSWKHIIDSSLIAAMGPAGGGRNSVTPRLLRHFNLFCFSEFDDNTLRRIFVTIVQWHFSI 2385          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A7S3HNN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNN0_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.660e-91
Identity = 139/206 (67.48%), Postives = 165/206 (80.10%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHF 620
            W +MLP   I        IVVPN YTAQY+ ++ LL+ + K  +VCGPTGTGKS YV+ TIT  L QD++K L LGFSAKTSANMTQDIIDGKLDKRRKGV+GPP GQ +I+F+DDLNMPEVE YGAQPP+EL+RQ++DNGGWY+LK+ +W+TIVDT V+ AMGP GGGRN +TPRLLRHFN+  F EFDD+TL RIF  IV WHF
Sbjct:  397 WADMLPAYSIAPDTPYSTIVVPNNYTAQYSFMIELLVTQKKHVLVCGPTGTGKSVYVYNTITTQLPQDQYKALCLGFSAKTSANMTQDIIDGKLDKRRKGVFGPPPGQHSIIFIDDLNMPEVEEYGAQPPIELVRQLMDNGGWYDLKEKSWKTIVDTSVIAAMGPAGGGRNGVTPRLLRHFNLFSFAEFDDNTLRRIFSIIVQWHF 602          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A7S3HNL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNL1_9STRA)

HSP 1 Score: 300 bits (767), Expect = 1.280e-90
Identity = 139/206 (67.48%), Postives = 165/206 (80.10%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHF 620
            W +MLP   I        IVVPN YTAQY+ ++ LL+ + K  +VCGPTGTGKS YV+ TIT  L QD++K L LGFSAKTSANMTQDIIDGKLDKRRKGV+GPP GQ +I+F+DDLNMPEVE YGAQPP+EL+RQ++DNGGWY+LK+ +W+TIVDT V+ AMGP GGGRN +TPRLLRHFN+  F EFDD+TL RIF  IV WHF
Sbjct:  397 WADMLPAYSIAPDTPYSTIVVPNNYTAQYSFMIELLVTQKKHVLVCGPTGTGKSVYVYNTITTQLPQDQYKALCLGFSAKTSANMTQDIIDGKLDKRRKGVFGPPPGQHSIIFIDDLNMPEVEEYGAQPPIELVRQLMDNGGWYDLKEKSWKTIVDTSVIAAMGPAGGGRNGVTPRLLRHFNLFSFAEFDDNTLRRIFSIIVQWHF 602          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A7S2QVE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVE7_9STRA)

HSP 1 Score: 297 bits (760), Expect = 1.910e-89
Identity = 145/209 (69.38%), Postives = 163/209 (77.99%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMT--WQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFN 623
            W + L +  IPD A   DIVV N YTAQ++    LLL R K  + CGPTGTGKSTYV  TIT+   Q KF+P+ LGFSAKTSANMTQDII GKLDKRRKG YGPP GQ AIVFVDDLNMPEVETYGAQPP+ELLRQMIDNGG+Y+L D    W TI D  +V AMGPPGGGRN +TPRLLRHFN++CF EFDD+TL RIF TI +W+FN
Sbjct: 2086 WEDTLDKFVIPDNAVYADIVVSNKYTAQFSYFCDLLLTRGKTALFCGPTGTGKSTYVLNTITKEFDQSKFRPIALGFSAKTSANMTQDIIHGKLDKRRKGFYGPPKGQRAIVFVDDLNMPEVETYGAQPPIELLRQMIDNGGYYDLVDPARPWLTIQDVTLVSAMGPPGGGRNGVTPRLLRHFNLMCFDEFDDATLMRIFSTIGEWYFN 2294          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A1W0A8D9_9STRA (Dynein heavy chain n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8D9_9STRA)

HSP 1 Score: 291 bits (746), Expect = 1.460e-87
Identity = 133/209 (63.64%), Postives = 166/209 (79.43%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLN 629
            W   L E  IP  +    IVVP  YTAQ  +L+ LL++  +K +VCGPTGTGKS Y+   + + ++ D++  + L FSAKTSANMTQ+IIDGKLDKRRKGVYGPP+G+  IVFVDDLNMP++ETYGAQPP+EL+RQ++D+GGWY+LK+M WQ I+DT+VV AMGPPGGGRN ITPR  RHFN+LCF EFDD+TL+RIF TIV W+FN N
Sbjct: 2217 WEETLKEYIIPSNSPFSSIVVPTIYTAQLENLVKLLVSNKRKVLVCGPTGTGKSCYLDAILNEKMSPDQYSVIMLSFSAKTSANMTQNIIDGKLDKRRKGVYGPPVGKNGIVFVDDLNMPQIETYGAQPPIELVRQLVDSGGWYDLKEMVWQKIIDTIVVTAMGPPGGGRNTITPRFQRHFNVLCFSEFDDATLSRIFTTIVGWYFNSN 2425          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: A0A2D4BMI7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMI7_PYTIN)

HSP 1 Score: 290 bits (741), Expect = 6.860e-87
Identity = 135/209 (64.59%), Postives = 166/209 (79.43%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLN 629
            W  +L +  IP       IVVP  YTAQ  +L+ LL+   +K +VCGPTGTGKS Y+   + + L QDK+  + L FSAKTSANMTQ+IIDGKLDKRRKGV+GPP+G+ AIVFVDDLNMP VETYGAQPP+EL+RQ+ID+GG+Y+LKDMTW+ I+DT+VV AMGPPGGGRN++TPRLLRHFN+LCF EFDD+TLTRIF TI+  +   N
Sbjct: 2031 WEELLKDYVIPPGTPFNQIVVPTIYTAQLETLVALLIQNKRKVLVCGPTGTGKSCYLSAILNETLPQDKYSVVMLAFSAKTSANMTQNIIDGKLDKRRKGVFGPPVGKDAIVFVDDLNMPLVETYGAQPPIELVRQLIDSGGYYDLKDMTWRKIIDTIVVAAMGPPGGGRNNVTPRLLRHFNLLCFSEFDDATLTRIFSTILSSYLQSN 2239          
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Match: K3WBA0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBA0_GLOUD)

HSP 1 Score: 288 bits (738), Expect = 1.700e-86
Identity = 135/209 (64.59%), Postives = 165/209 (78.95%), Query Frame = 3
Query:    3 WVNMLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGKSTYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYGPPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQTIVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVDWHFNLN 629
            W ++L E  I        IVVP  +TAQ   L+ LL+   +K +VCGPTGTGKS Y+   +   L QDK+  + L FSAKTSANMTQ+IIDGKLDKRRKGVYGPPMG+ AIVFVDDLNMP VETYGAQPP+EL+RQ+ID+GG+Y+LK+M W+ +VDT+V+ AMGPPGGGRN++TPRLLRHFN+LCF EFDD+TLTRIF TI+ W+F  N
Sbjct:  979 WEDILREYVIQPNTPFNQIVVPTIFTAQLEYLVQLLVTNKRKVLVCGPTGTGKSCYMGAILNDVLPQDKYSVIMLSFSAKTSANMTQNIIDGKLDKRRKGVYGPPMGKNAIVFVDDLNMPLVETYGAQPPVELVRQLIDSGGYYDLKEMVWRKVVDTIVLAAMGPPGGGRNNVTPRLLRHFNLLCFSEFDDATLTRIFTTILSWYFGTN 1187          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7920.19205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4R7_9PHAE2.300e-13698.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT69_ECTSI5.200e-13392.86Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YLN5_9STRA9.160e-9670.19Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A482SUL6_9ARCH3.290e-9367.31Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S3HNN0_9STRA1.660e-9167.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S3HNL1_9STRA1.280e-9067.48Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2QVE7_9STRA1.910e-8969.38Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]
A0A1W0A8D9_9STRA1.460e-8763.64Dynein heavy chain n=1 Tax=Thraustotheca clavata T... [more]
A0A2D4BMI7_PYTIN6.860e-8764.59Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WBA0_GLOUD1.700e-8664.59Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7920contigEcto-sp13_S_contig7920:3885..6033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score417.5
Seed ortholog evalue3.5e-114
Seed eggNOG ortholog2880.D7FT69
Model size632
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size621
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7920.19205.1prot_Ecto-sp13_S_contig7920.19205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7920 3896..6033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.4800956-UTR-Ecto-sp13_S_contig7920:3884..38951681464063.4800956-UTR-Ecto-sp13_S_contig7920:3884..3895Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7920 3885..3895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.4937303-CDS-Ecto-sp13_S_contig7920:3895..40121681464063.4937303-CDS-Ecto-sp13_S_contig7920:3895..4012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 3896..4012 +
1681464063.5078237-CDS-Ecto-sp13_S_contig7920:4341..44041681464063.5078237-CDS-Ecto-sp13_S_contig7920:4341..4404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 4342..4404 +
1681464063.5166357-CDS-Ecto-sp13_S_contig7920:4655..47641681464063.5166357-CDS-Ecto-sp13_S_contig7920:4655..4764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 4656..4764 +
1681464063.526691-CDS-Ecto-sp13_S_contig7920:5118..52481681464063.526691-CDS-Ecto-sp13_S_contig7920:5118..5248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 5119..5248 +
1681464063.5368764-CDS-Ecto-sp13_S_contig7920:5831..60331681464063.5368764-CDS-Ecto-sp13_S_contig7920:5831..6033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 5832..6033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7920.19205.1

>prot_Ecto-sp13_S_contig7920.19205.1 ID=prot_Ecto-sp13_S_contig7920.19205.1|Name=mRNA_Ecto-sp13_S_contig7920.19205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=207bp
MLPELQIPDAATMGDIVVPNAYTAQYNSLLTLLLNRDKKTIVCGPTGTGK
STYVFKTITQALAQDKFKPLTLGFSAKTSANMTQDIIDGKLDKRRKGVYG
PPMGQTAIVFVDDLNMPEVETYGAQPPLELLRQMIDNGGWYNLKDMTWQT
IVDTVVVGAMGPPGGGRNHITPRLLRHFNILCFLEFDDSTLTRIFKTIVD
WHFNLNK
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mRNA from alignment at Ecto-sp13_S_contig7920:3885..6033+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7920.19205.1 ID=mRNA_Ecto-sp13_S_contig7920.19205.1|Name=mRNA_Ecto-sp13_S_contig7920.19205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:3885..6033+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGGTGAACATGCTGCCGGAGCTTCAGATTCCTGACGCGGCCACGATG GGAGACATCGTCGTGCCGAACGCCTACACGGCCCAGTACAACTCCCTTTT GACCCTTCTCTTGAACCGCGATAAGAAGGTGAATCATCGTGGAACGCACG TCGTGTTCCTACGAGTGAATGTTGATGGTGCGAAGGTTTTGTCACCCTTG TTGTGTTGGCTTGATTCACGCCTTCTCCATCCTTGGGATATCATCGAGCG GATTCCCCGTACCATTCCGTAACCTGATCCTCCCCTCTTGCTGATTGGAG TGAAATATGTTGCTCCGGATTCCAAGCGCAGCATCCTAATTATTGCTTTT CAGGACTTCTTGCTCCCAATTGTCCGAGCACTCGCCGAGCACGACGAACG TGGTGTTAGTATGATCAACGAAACGCCCGGGATGCTGCTGCCGTTGTTGT TACGCAGACGATTGTGTGCGGGCCGACGGGTACCGGCAAGTCGACATATG TGTTCAAGACCATCACTCAGGTGAGAAAGACAACATGGACACGGACCACC CGAAACTAGTATCTACCGCTGTTTGACAGATTTCCGCGGCGACGAGCGCG GCTTAGGACGGGATGCGCCGGATTTCTTCAGGACTTGAATCTAGTGTGCA ATACACCCTCGCCCAACGTTTCGCGCGAAGAGAGCGCTACCCTTGACAGC CGATGGCTTTTCTTTTTTGCGGCGTTTGGGAGCGGGTGATTAACAGAACC GTGTACCTGGTCCTTGTACAGGCACTGGCCCAGGACAAGTTCAAGCCTCT GACTCTGGGGTTCAGCGCTAAGACAAGCGCAAACATGACGCAAGATATCA TTGACGGAAAGCTCGACAAAAGGCGCAAAGGTTAAAAGGGGCGGGGTTGA AGAAACTCCAGAGAAGTTTCTCGTTTCTGGTAGTGTTGCAGTCAACGCGG CAAGAGACGAACTGCCAGGGGGTTTGTGGTACAGTGTTCATGAGCCGATT ATTCAGGGGAGCGAATGATAATATACTGGAGGTGCCCTGGCTTGTTCCCA TGTTCGACTCTTCCACTATGTTGAGGGGTAGTAGTTATTCTGTAGTTTCG TGCCTATGTTTGAGAATTTTGTCCCGCCGGTGGGTTAATGCCGCTTGAGA GCTTACCCCAAACATGAGATGTTTCACGCGCCCAGATTTCCATTGCTTGC GCTCCTGTCGTGTGCTGCGGACAACCCGACCCAGGTGTGTACGGTCCGCC CATGGGGCAGACCGCCATTGTATTCGTGGACGATCTCAACATGCCTGAGG TGGAGACCTACGGGGCTCAGCCCCCGCTCGAACTCCTGCGGCAGATGATT GACAACGGCGGCTGGTGAGACGACGGTCTCTTGTACAACCCGTCGTGTGG GAAGGGGGTTTACGAACAGAGAAAGAAACACGAGAAACAGGAACTTGGGT AAATATTTCAGTACGTATCGTAAACTATCGCCATGTGAAATGATGTCAGC TGAGTTTTCGGCTGAGAGCAAGCGCCATGTGCTTTGCGTATTTTCGTGAA CACTTGATGATTTCATGAGGTGCTGTCATGATATTGAGGGCCGGTACATC CTGCGCAGCACACGGCTATTTTTTTTCGGATGTTCGGGTGGAAGATGTCG TTTTCGTTCCATCAACGTGTGCAACTCGTGTCTGCTGATCTGGGCGCCGA ATCGCGGTCCTTTTTCTCCCACAACGCGACGGCGTCGTTTTCGACCTAAA TCCGACATCCGTACAATGTTCAGGTTGGACTTATGCGCTCGGTCCAAAGA CCTCCCGAACTCCAGCCCCATGAGCATCTGGAACAAAATCGAGTGCGTTT TTAAGTCAAATTCAAGGTGGATGAGAGTCTGTCCTGATGGGCGTTGCCGA AAATCAGGGTATTGCATTTAGCCGATGACTTGTTACGAACCGAACAGGTA TAACCTGAAGGACATGACGTGGCAGACAATTGTGGACACCGTTGTCGTGG GCGCGATGGGACCTCCTGGCGGGGGCAGGAACCACATCACCCCGCGGCTC CTTCGGCACTTCAATATTCTCTGCTTCCTTGAGTTCGACGACAGCACTCT CACGAGAATCTTTAAGACCATCGTTGATTGGCACTTCAATCTCAACAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7920:3885..6033+

>mRNA_Ecto-sp13_S_contig7920.19205.1 ID=mRNA_Ecto-sp13_S_contig7920.19205.1|Name=mRNA_Ecto-sp13_S_contig7920.19205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:3885..6033+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCCGGAGCTTCAGATTCCTGACGCGGCCACGATGGGAGACATCGT
CGTGCCGAACGCCTACACGGCCCAGTACAACTCCCTTTTGACCCTTCTCT
TGAACCGCGATAAGAAGACGATTGTGTGCGGGCCGACGGGTACCGGCAAG
TCGACATATGTGTTCAAGACCATCACTCAGGCACTGGCCCAGGACAAGTT
CAAGCCTCTGACTCTGGGGTTCAGCGCTAAGACAAGCGCAAACATGACGC
AAGATATCATTGACGGAAAGCTCGACAAAAGGCGCAAAGGTGTGTACGGT
CCGCCCATGGGGCAGACCGCCATTGTATTCGTGGACGATCTCAACATGCC
TGAGGTGGAGACCTACGGGGCTCAGCCCCCGCTCGAACTCCTGCGGCAGA
TGATTGACAACGGCGGCTGGTATAACCTGAAGGACATGACGTGGCAGACA
ATTGTGGACACCGTTGTCGTGGGCGCGATGGGACCTCCTGGCGGGGGCAG
GAACCACATCACCCCGCGGCTCCTTCGGCACTTCAATATTCTCTGCTTCC
TTGAGTTCGACGACAGCACTCTCACGAGAATCTTTAAGACCATCGTTGAT
TGGCACTTCAATCTCAACAAG
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