mRNA_Ecto-sp13_S_contig7920.19204.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7920.19204.1
Unique NamemRNA_Ecto-sp13_S_contig7920.19204.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Match: D7FT69_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 2.310e-75
Identity = 122/124 (98.39%), Postives = 123/124 (99.19%), Query Frame = 1 
Query:    1 GGRKQSLSKSKTSAGAEEAEAMDPKTLAMRAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNPSR 372
            GGRKQSLSKSK SAGAEEAEAMDPKTLAMRAKH+ECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNPSR
Sbjct: 2375 GGRKQSLSKSKASAGAEEAEAMDPKTLAMRAKHVECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNPSR 2498
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BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 4.530e-73
Identity = 120/124 (96.77%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 GGRKQSLSKSKTSAGAEEAEAMDPKTLAMRAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNPSR 372
            GGRKQSLSKSK SAGAEEAEAMD KTLA+RAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNP R
Sbjct: 2529 GGRKQSLSKSKASAGAEEAEAMDTKTLAVRAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDGGPRAHFYNPLR 2652
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BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Match: A0A835YLN5_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.370e-21
Identity = 50/110 (45.45%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:   40 AGAEEAEAMDPKTLAMRAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAFSGKLSNPCPVRDG--GPRAHFYN 363
            A A   E M      MR +HIEC F+F LVWS+G +G E  Q+ + +FL   +AD   IE +W GVNN+L+VR+W PP+F  + R F G ++ P P  DG  G RAH Y+
Sbjct: 1337 AAAMALEGMSLDAQPMRQRHIECSFLFALVWSVGCSGDEPSQRKWEDFLWQFMADSACIEMDWPGVNNSLKVREWEPPDFTAEDRMFKGTMALPVPA-DGSWGLRAHCYS 1445
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BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Match: F0Y0V2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0V2_AURAN)

HSP 1 Score: 68.2 bits (165), Expect = 8.100e-11
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1 
Query:   88 RAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIEN-EWEGVNNALQVRKWSPPNFAEKGRA-FSGKLSNPC-PVRDGGPRAHFYNP 366
            R KH+EC F+F L+WS G T   AG+  +  F+  I+  + V+++  ++GV NAL VR W  P FAE     F GK+   C P  DG  +   Y+P
Sbjct: 1332 RKKHVECAFLFALIWSSGVTADNAGRAKYSAFVREIMESVDVLDDARYQGVTNALAVRGWKRPKFAEAEEGEFDGKVE--CGPPADGDLQDWCYDP 1425
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BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Match: F0YMK2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMK2_AURAN)

HSP 1 Score: 55.8 bits (133), Expect = 1.650e-6
Identity = 29/75 (38.67%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:   73 KTLAMRAKHIECCFMFGLVWSLGSTGVEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRA 297
            K    R +HIEC F++ L+WS+G++G E  Q  F  FL +I++D  VI   +  V+ +L  R W  P    KG A
Sbjct:  854 KERRQRRQHIECAFLWALLWSVGASGPETAQTQFGVFLRDIISDSRVIRTRYMTVHESLTRRGWCLP-LPSKGSA 927
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7920.19204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FT69_ECTSI2.310e-7598.39Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L4R7_9PHAE4.530e-7396.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YLN5_9STRA3.370e-2145.45Dynein heavy chain and region D6 of dynein motor-d... [more]
F0Y0V2_AURAN8.100e-1139.58Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YMK2_AURAN1.650e-638.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7920contigEcto-sp13_S_contig7920:2120..3872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score253.8
Seed ortholog evalue4e-65
Seed eggNOG ortholog2880.D7FT69
Model size375
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size372
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.4179502-CDS-Ecto-sp13_S_contig7920:2119..21941681464063.4179502-CDS-Ecto-sp13_S_contig7920:2119..2194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 2120..2194 +
1681464063.435617-CDS-Ecto-sp13_S_contig7920:2840..30171681464063.435617-CDS-Ecto-sp13_S_contig7920:2840..3017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 2841..3017 +
1681464063.4469142-CDS-Ecto-sp13_S_contig7920:3751..38711681464063.4469142-CDS-Ecto-sp13_S_contig7920:3751..3871Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 3752..3871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7920.19204.1prot_Ecto-sp13_S_contig7920.19204.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7920 2120..3871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7920.19204.1

>prot_Ecto-sp13_S_contig7920.19204.1 ID=prot_Ecto-sp13_S_contig7920.19204.1|Name=mRNA_Ecto-sp13_S_contig7920.19204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
GGRKQSLSKSKTSAGAEEAEAMDPKTLAMRAKHIECCFMFGLVWSLGSTG
VEAGQKAFLEFLDNIVADLGVIENEWEGVNNALQVRKWSPPNFAEKGRAF
SGKLSNPCPVRDGGPRAHFYNPSR
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mRNA from alignment at Ecto-sp13_S_contig7920:2120..3872+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7920.19204.1 ID=mRNA_Ecto-sp13_S_contig7920.19204.1|Name=mRNA_Ecto-sp13_S_contig7920.19204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:2120..3872+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGCCGCAAGCAGTCTTTATCGAAGTCGAAGACCTCCGCGGGTGCCGA
GGAAGCAGAGGCCATGGACCCAAAGGTGTGGCTTTCGATCGACACATTGA
GTTTAGGGTTTACCCAGCCTCTCGAGAACAGGGAGCCGTGCGCTGCAACT
CACTCACCTACCATACCCCGCTACGGTCGACTAGCTGCTTACCTTCCCAG
TAGCAGGGTTCCAGGCAAATGTATTTGTAGCCAACGCGTTTGATTGCTGT
CTGTTGCAGGTGCGACTATGGCATACTCTTTGGTTGGGTAGGCGATGTTG
AAAACAATTTTTGGTGTTCCAGTGCGTTACAATATCCTGTCGTGCTGCGT
GCGTGAACTTGTGAGAAACCGGGAAACACGCCCGAATCGTTGATGATGAT
GACAGAGCGCCCATCGAACGTGAAGTAAGACTTCGTTTGCTGAGGAAACG
AATGGAGGTGGCAATGTAATTTGATGGACGGCACTAGTCCAGCTAACCCG
TGTTACCTGAGGCATATCCTGCGTCGTTTCGCTCGCACAAAAAGCACTGC
GAGAGAAAGCACTGTAGCCCCCCTTGCCGATAACGGGTGACGGTCGAAAT
TCTCCTCGTCGAGGGGGAAGCAACCAATCCTACTCATGATATGCGTTCAA
AGCAAACTCAAAAGCTCCCCTTACTTCCCGCCCCCTCTGCCGCGGCCGTC
CCGTTGCTCGCGACAAAAAAGACGCTTGCCATGCGCGCGAAGCACATAGA
GTGCTGCTTTATGTTCGGCCTGGTATGGTCGTTGGGCAGCACCGGGGTCG
AGGCCGGTCAGAAGGCGTTCTTGGAGTTCCTGGACAACATCGTCGCCGAC
CTGGGAGTGATCGAAAACGAGTGGGAAGGGGTTAACAACGCGCTTCAGGT
GCAGGAATGGTCGAGGGATTTATAAGTAGCACGCGATGTGTTGGAGGGGT
GGGTGCATGGGCTAGTGCATGGGCTAGTGTTCACTCTCTATGGTGGATGC
TTGAAGAGTAATCATGGTTGGTTGTTCGGAGAGATAAAACCGTTCTTCCG
ATTTTGTTGAAACTATTTAGTGCAGACAGCGCGGGAGTGGCAAAAAGACG
CATACGCCTTCTGAACGCACACTGCTTATTGAATGACGTAACACCATGGT
AGGTTAGTGACCTCTGCGATCCTAAGGTGGTGTTGGTGCACATACCGCGC
TCAAACGGTTGTGCGGGTGTGCTACAACGACGCTTCTGTAGGTGAATTCT
GCGGCACCTTGGTCTCCGAGTTTGCATGGGGGGGCAAGAATAGGCGGGCA
AGAGAGCGAAGGCTTCCTATCGAGTTGTTGTTGGGCTTTTACATCGACAC
CGGTGTTCTCTCATTTCGTTTGGGATGCCGACATCGACTTGCCCTCGAAC
ACGAGTCGAGCAATACGTTGCACGTCGTGGGTGATTCTGCACTTTCTCTT
GTACGTCGCACCTCAGCGCATGCATCTGGTATGCAAATACCGACGTCTTT
GTTCCTACGGAGCACTGCTTTATTCACGCGTTTGAACCAGGGAAAAAAGG
AACCACTTCATGATTGGAGTTTGGGAATTGCATCTCTTTTCGTCGTGTTT
TCAAGTTCCATTTTCCTCTCTGGGAATTCCAGGTCCGAAAATGGAGCCCA
CCGAACTTCGCCGAAAAGGGAAGAGCGTTCTCCGGAAAGCTCTCCAATCC
GTGCCCGGTACGGGACGGCGGTCCTCGAGCGCACTTCTACAACCCATCGC
GGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7920:2120..3872+

>mRNA_Ecto-sp13_S_contig7920.19204.1 ID=mRNA_Ecto-sp13_S_contig7920.19204.1|Name=mRNA_Ecto-sp13_S_contig7920.19204.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:2120..3872+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGCCGCAAGCAGTCTTTATCGAAGTCGAAGACCTCCGCGGGTGCCGA
GGAAGCAGAGGCCATGGACCCAAAGACGCTTGCCATGCGCGCGAAGCACA
TAGAGTGCTGCTTTATGTTCGGCCTGGTATGGTCGTTGGGCAGCACCGGG
GTCGAGGCCGGTCAGAAGGCGTTCTTGGAGTTCCTGGACAACATCGTCGC
CGACCTGGGAGTGATCGAAAACGAGTGGGAAGGGGTTAACAACGCGCTTC
AGGTCCGAAAATGGAGCCCACCGAACTTCGCCGAAAAGGGAAGAGCGTTC
TCCGGAAAGCTCTCCAATCCGTGCCCGGTACGGGACGGCGGTCCTCGAGC
GCACTTCTACAACCCATCGCGG
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