mRNA_Ecto-sp13_S_contig7920.19203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7920.19203.1
Unique NamemRNA_Ecto-sp13_S_contig7920.19203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: D7FT69_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.060e-48
Identity = 90/94 (95.74%), Postives = 91/94 (96.81%), Query Frame = 1
Query:    1 HQEKSLPALENGAPGGAGDDAAATAEPSAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEEAFEA 282
            HQ K + ALENGAPGGAGDDAAATAEPSAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEEAFEA
Sbjct: 2275 HQVKDISALENGAPGGAGDDAAATAEPSAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEEAFEA 2368          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A835YLN5_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.520e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEE 270
            F L+  E  LV EL  WLVEPCLAF+RRE++EM PTVDTNLV+SLINIMEC L +
Sbjct: 1272 FVLSRQERQLVEELCLWLVEPCLAFIRRELTEMSPTVDTNLVRSLINIMECLLSK 1326          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: D0MXQ9_PHYIT (Dynein heavy chain n=28 Tax=Phytophthora TaxID=4783 RepID=D0MXQ9_PHYIT)

HSP 1 Score: 69.3 bits (168), Expect = 1.050e-11
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            F + + + +L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I+E QL
Sbjct: 2074 FEINSEQRILIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHILEAQL 2126          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: K3WBA0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBA0_GLOUD)

HSP 1 Score: 67.4 bits (163), Expect = 4.980e-11
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   28 ENGAPGGAGDDAAATAEPSAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            ENGA G  G  AA    P A N          +  L+  LFAWLVEPC+AF+R+E+ E+ PTVDTNLV SLI+I+E QL
Sbjct:  800 ENGATGNPGTLAAPPPGPIAIN--------REQRALLSFLFAWLVEPCIAFVRKELVELTPTVDTNLVMSLIHILEAQL 870          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A662X5F7_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662X5F7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.850e-11
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   82 SAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            +A +GP  F + + +  L+  LF+WLVEPC++F+R+E+ E+ PTVDTNL+QSLI+I+E QL
Sbjct: 2084 AALSGP--FEINSEQRTLLSFLFSWLVEPCISFVRKELVELSPTVDTNLIQSLIHILEAQL 2142          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A3F2RZ69_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RZ69_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 9.320e-11
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            F + + +  L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I E QL
Sbjct: 1367 FEINSEQRNLIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHIFEAQL 1419          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A0P1B0L6_PLAHL (Dynein heavy chain axonemal n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0L6_PLAHL)

HSP 1 Score: 66.6 bits (161), Expect = 9.340e-11
Identity = 30/55 (54.55%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEE 270
            F +  ++  L+  LF+WLVEPC+AF+R+E++E+ PTVD+NLVQSLI+I+E QL +
Sbjct: 2020 FEINFDQRKLIFFLFSWLVEPCIAFVRKELTELSPTVDSNLVQSLIHILEAQLSK 2074          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A8K1FD19_PYTOL (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A8K1FD19_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 9.350e-11
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   76 EPSAANGPTKFTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            E S   GP +  L   + L    LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I+E QL
Sbjct: 2118 EASPCIGPFEINLEQRQLLTF--LFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHILEAQL 2178          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: H3G9Y8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9Y8_PHYRM)

HSP 1 Score: 66.2 bits (160), Expect = 1.270e-10
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQL 264
            F +  ++  L+  LF+WLVEPC+AF+R+E+ E+ PTVDTNLVQSLI+I E QL
Sbjct: 1141 FEINNDQRSLIYFLFSWLVEPCIAFVRKELVELSPTVDTNLVQSLIHIFEAQL 1193          
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Match: A0A7S2QVE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVE7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.280e-10
Identity = 32/57 (56.14%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  106 FTLTANECLLVRELFAWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEEAF 276
            F  T  E  LVRELF W+VEP ++ +R+E  E+VPTVDTNLV SL+  MEC L   F
Sbjct: 1910 FVFTPREAQLVRELFHWVVEPLVSLVRKETIEVVPTVDTNLVNSLMISMECMLSTCF 1966          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7920.19203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT69_ECTSI1.060e-4895.74Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835YLN5_9STRA1.520e-1469.09Dynein heavy chain and region D6 of dynein motor-d... [more]
D0MXQ9_PHYIT1.050e-1158.49Dynein heavy chain n=28 Tax=Phytophthora TaxID=478... [more]
K3WBA0_GLOUD4.980e-1151.90Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662X5F7_9STRA6.850e-1152.46Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
A0A3F2RZ69_9STRA9.320e-1158.49Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A0P1B0L6_PLAHL9.340e-1154.55Dynein heavy chain axonemal n=1 Tax=Plasmopara hal... [more]
A0A8K1FD19_PYTOL9.350e-1155.56Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
H3G9Y8_PHYRM1.270e-1058.49Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2QVE7_9STRA1.280e-1056.14Hypothetical protein (Fragment) n=1 Tax=Triparma p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7920contigEcto-sp13_S_contig7920:1561..2103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.5
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog2880.D7FT69
Model size286
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
Cds size282
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464063.376371-CDS-Ecto-sp13_S_contig7920:1560..17641681464063.376371-CDS-Ecto-sp13_S_contig7920:1560..1764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 1561..1764 +
1681464063.3914418-CDS-Ecto-sp13_S_contig7920:2023..21011681464063.3914418-CDS-Ecto-sp13_S_contig7920:2023..2101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7920 2024..2101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7920.19203.1prot_Ecto-sp13_S_contig7920.19203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7920 1561..2101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7920.19203.1

>prot_Ecto-sp13_S_contig7920.19203.1 ID=prot_Ecto-sp13_S_contig7920.19203.1|Name=mRNA_Ecto-sp13_S_contig7920.19203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
HQEKSLPALENGAPGGAGDDAAATAEPSAANGPTKFTLTANECLLVRELF
AWLVEPCLAFLRREVSEMVPTVDTNLVQSLINIMECQLEEAFEA
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mRNA from alignment at Ecto-sp13_S_contig7920:1561..2103+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7920.19203.1 ID=mRNA_Ecto-sp13_S_contig7920.19203.1|Name=mRNA_Ecto-sp13_S_contig7920.19203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=543bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:1561..2103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAAGAGAAGAGTCTACCCGCTTTGGAGAATGGGGCACCGGGGGGCGC AGGTGACGACGCTGCCGCCACCGCCGAGCCATCCGCCGCCAACGGGCCGA CGAAGTTCACCCTGACAGCGAACGAGTGCCTTCTGGTGCGCGAGCTGTTC GCCTGGCTGGTGGAGCCATGCCTGGCGTTCTTGCGGAGGGAGGTGTCTGA GATGGTGAGACATCGTCGTTGTTGTCGGCGCTGGTGCCGTCCTGTTTGTT TGGAAGGCGTTTCTGTTCTAGCATAGCCTCCCCGAAGATTCTCGTGTACA ACCGTGGCGCCTGGGATAGCTCGAGCGGCGCAGGGAGATTGTCATGAGGG ACCTTGGTTGAGGTTACTGAAGACACTAACTGTGGCCCTCATTTCACGAA AAACCACAACTCTGAGGAATTTCAAACCGGAGCATCCACATCGTCCCTCT CTATCCTATTTAGGTGCCAACCGTAGACACAAACCTGGTGCAGTCCCTCA TAAACATCATGGAGTGCCAGCTAGAAGAGGCATTCGAGGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7920:1561..2103+

>mRNA_Ecto-sp13_S_contig7920.19203.1 ID=mRNA_Ecto-sp13_S_contig7920.19203.1|Name=mRNA_Ecto-sp13_S_contig7920.19203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7920:1561..2103+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCAAGAGAAGAGTCTACCCGCTTTGGAGAATGGGGCACCGGGGGGCGC
AGGTGACGACGCTGCCGCCACCGCCGAGCCATCCGCCGCCAACGGGCCGA
CGAAGTTCACCCTGACAGCGAACGAGTGCCTTCTGGTGCGCGAGCTGTTC
GCCTGGCTGGTGGAGCCATGCCTGGCGTTCTTGCGGAGGGAGGTGTCTGA
GATGGTGCCAACCGTAGACACAAACCTGGTGCAGTCCCTCATAAACATCA
TGGAGTGCCAGCTAGAAGAGGCATTCGAGGCG
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