mRNA_Ecto-sp13_S_contig12291.1919.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12291.1919.1
Unique NamemRNA_Ecto-sp13_S_contig12291.1919.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: D8LMM8_ECTSI (Transaldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMM8_ECTSI)

HSP 1 Score: 396 bits (1018), Expect = 7.640e-135
Identity = 205/227 (90.31%), Postives = 216/227 (95.15%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEAAVAIAEQ 681
            +AG PR+RVLIKTPATWAGIRAT RLEREGIRCLVTLVCSRVQGQAAAEAGAS+IATYVGRVSDWHKKAAA+ETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFV+HGLPTEVMGASFR+ADQVEALAGCDHLTIAP LITEMARLPPRV  AGVPTSGNM P+QETRRPSEPM+ +PSK DE+SFLAALGRDTCGTEVLRSSVEGFA DT ALEAAVA AE+
Sbjct:  196 EAGIPRERVLIKTPATWAGIRATERLEREGIRCLVTLVCSRVQGQAAAEAGASIIATYVGRVSDWHKKAAASETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVSHGLPTEVMGASFRSADQVEALAGCDHLTIAPRLITEMARLPPRVGTAGVPTSGNMPPEQETRRPSEPMNGNPSKPDEESFLAALGRDTCGTEVLRSSVEGFARDTAALEAAVAKAER 422          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A7Z0ME10_9BURK (Transaldolase n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7Z0ME10_9BURK)

HSP 1 Score: 154 bits (388), Expect = 2.640e-41
Identity = 90/220 (40.91%), Postives = 126/220 (57.27%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEA 660
            QAG PR+RVLIK  +TW GI+A  +L+ EGIRC +TL+ S  Q  A A+A A +I+ +VGR+ DW+KKAA A+            +  A+  + DPGV     + DY+ AHG+PTE+MGASFRN  Q+ ALAGCD LTI+P L+ E+++       +  P    + P+   R P E  +      DE +F   L  D   TE L   +  F++D   L+A
Sbjct:  115 QAGVPRERVLIKLASTWEGIQAARQLQSEGIRCNMTLLFSLPQAVACAQARAQLISPFVGRIYDWYKKAAGADW-----------DEAANAGANDPGVRSVRRIYDYYKAHGIPTEIMGASFRNIGQIRALAGCDLLTISPELLNELSQ-------STEPLERQLDPEAAKRNPPEREAS-----DEVAFRTGLNDDAMATEKLAEGIRAFSADAIKLDA 311          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A5P9JR96_9HYPH (Transaldolase n=3 Tax=Microvirga TaxID=186650 RepID=A0A5P9JR96_9HYPH)

HSP 1 Score: 149 bits (377), Expect = 1.290e-39
Identity = 93/227 (40.97%), Postives = 122/227 (53.74%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMAR----LPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEAAVA 669
            + G  R+R+LIK  +TW GIRA   L++EGI C +TL+ S+VQ QA AEAG  +I+ +VGR+ DWH K      TG                  DPGV     + + + A G+PT VMGASFRN  ++EALAGCD LTI+P L+ E+A+    LP R+ P GV            R P+      P +LDE+SF  AL  D   TE L   +  F  D  +L   VA
Sbjct:  121 ERGIGRERILIKIASTWEGIRAAEILQKEGIDCNLTLLFSQVQAQACAEAGVFLISPFVGRILDWHVKNGGGPYTG----------------ETDPGVLSVRRIYESYKAQGIPTVVMGASFRNIGEIEALAGCDRLTISPALLDELAKAEGELPRRLSPDGV-----------ARIPA------PQRLDEKSFRFALNEDAMATEKLAEGIRSFVKDLRSLRTLVA 314          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A7S2V3H4_9STRA (Transaldolase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V3H4_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.130e-38
Identity = 95/220 (43.18%), Postives = 120/220 (54.55%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALA-GCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALE 657
            Q G PR+RVLIK  ATW G++A  +LE EGI+CLVTLV    QG AAAEAGASM+ATYVGRVSDWH    A+E               +S + ED GV +T  +       GL TEVM ASFR+ DQ   LA  C+HLTIAP ++ ++   P R             P   T   +     +  KL +     A+ RD C ++V  SS +GF  DT AL+
Sbjct:   99 QQGIPRERVLIKVAATWEGLQAVKQLESEGIKCLVTLVVCEAQGIAAAEAGASMLATYVGRVSDWHN---ASEDQ-------------SSESREDAGVLMTEAIARALKERGLKTEVMAASFRSTDQAARLAQSCEHLTIAPEILKDLTSEPAR----------KTLPSSFTETDTSVAITN-KKLTQDDLETAIFRDLCASQVYSSSFQGFLDDTRALQ 291          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A2A2I6S9_9GAMM (Transaldolase n=2 Tax=Tamilnaduibacter salinus TaxID=1484056 RepID=A0A2A2I6S9_9GAMM)

HSP 1 Score: 147 bits (370), Expect = 1.320e-38
Identity = 92/219 (42.01%), Postives = 120/219 (54.79%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALE 657
            +AG    RVLIK  +TW GIRA   LE EGIRC +TL+ S  Q  A A+AGA +++ +VGR+ DWH K                ++  A    EDPGV   T + +YF  HG  T VMGASFRN  ++EALAGCD LTI+P L+ E++       PA +P    +AP Q +       SDHP  +DE+SF  ++  D   TE L   +  FA D   LE
Sbjct:  121 EAGADPTRVLIKIASTWEGIRAAQILENEGIRCNLTLLFSFTQAAACADAGAHLVSPFVGRILDWHLK---------------NSDRDAFEPFEDPGVRSVTRIYEYFKTHGFETIVMGASFRNTGEIEALAGCDRLTISPALLGELS-----ADPANLPRV--LAPDQASS------SDHPVSMDEKSFRWSMNDDAMATEKLAEGIRRFADDQLELE 311          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: UPI001866E04F (transaldolase n=1 Tax=Microbulbifer hainanensis TaxID=2735675 RepID=UPI001866E04F)

HSP 1 Score: 147 bits (370), Expect = 1.700e-38
Identity = 94/219 (42.92%), Postives = 117/219 (53.42%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALE 657
            QAG PR+RVLIK  +TW GI A   LEREGI C +TL+ S  Q  A AEAGA++I+ +VGR+ DWHK  A ++    +P              EDPGV     +  Y+ + G PT VMGASFRN  ++EALAGCD LTI+P L+ E+A             S  +A   ET+  SEP    P  L E  F   L RD   TE L   +  F  D   LE
Sbjct:  122 QAGVPRERVLIKIASTWEGIAAAAVLEREGIHCNLTLLFSFCQAVACAEAGATLISPFVGRILDWHK--ANSDRDDFSP-------------EEDPGVLSVRAIYHYYKSRGYPTIVMGASFRNTGEIEALAGCDRLTISPQLLQELAE-----------DSAPLAAGLETQIASEPRPAQP--LSEAEFRYQLNRDAMATEKLAEGIRNFVQDQERLE 312          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A0Q6EP03_9HYPH (Transaldolase n=1 Tax=Aurantimonas sp. Leaf443 TaxID=1736378 RepID=A0A0Q6EP03_9HYPH)

HSP 1 Score: 146 bits (369), Expect = 1.900e-38
Identity = 87/222 (39.19%), Postives = 116/222 (52.25%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEAAV 666
            + G PR+RVLIK  ATW GIRA   L++EGI C +TL+ +R Q  A A+AG  +I+ +VGR+ DW+ K+     T                A EDPGV     + DYF ++G+ T VMGASFRN  ++EALAGCD LTI+P L++E+A               +  P +    P       P  LDE SF  A+  D   TE L   +  FA D  +L   V
Sbjct:  121 ERGVPRERVLIKLAATWEGIRAAEILQKEGIDCNLTLIFNRTQAIACADAGVFLISPFVGRIMDWYAKSTGKTYT----------------AEEDPGVLSVRSIYDYFKSNGIRTVVMGASFRNVGEIEALAGCDRLTISPALLSELA--------------ASEGPLERRLSPERAEKIEPIALDEASFRWAMNEDAMATEKLAEGIRSFAKDLRSLRGLV 312          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A1H2F791_9PSED (Transaldolase n=1 Tax=Pseudomonas pohangensis TaxID=364197 RepID=A0A1H2F791_9PSED)

HSP 1 Score: 146 bits (368), Expect = 1.920e-38
Identity = 92/222 (41.44%), Postives = 120/222 (54.05%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSK--LDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEA 660
            Q+G  R+RVLIK  ATW GIRA  +LER+GI+C +TL+ S  Q  A AEAG  +I+ +VGR+ DW+KK+   + TG                +EDPGV   + +  Y+ AHG  T VMGASFRN  Q+EALAGCD LTI+P L+ ++A                 + + E +R      DH  +  LDE  F  AL  D   TE L   +  FA D   LEA
Sbjct:  114 QSGIGRERVLIKIAATWEGIRAAEQLERDGIQCNLTLLFSFAQAVACAEAGTFLISPFVGRIYDWYKKSENRDFTG----------------TEDPGVQSVSRIYRYYKAHGYQTVVMGASFRNIGQIEALAGCDRLTISPDLLNQLA-----------------SDQGELKRQLHAGDDHEPRQTLDEARFRWALNEDAMATEKLAEGIRLFARDQEKLEA 302          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A7X6WZP7_9BURK (Transaldolase n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A7X6WZP7_9BURK)

HSP 1 Score: 146 bits (368), Expect = 2.550e-38
Identity = 90/220 (40.91%), Postives = 122/220 (55.45%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEA 660
            Q+G PR RVLIK  +TW GI+A  +L+ EGIRC +TL+ S  Q  A A+A   +I+ +VGR+ DWHKKAA ++          TANA A     DPGV     + +Y+ AH +PTE+MGASFRN  Q+ ALAGCD LTI+P L+ E+++       +  P    + P+   R P    +      DE +F   L  D   TE L   +  F SD   L+A
Sbjct:  115 QSGIPRDRVLIKLASTWEGIQAARKLQSEGIRCNMTLLFSLPQAVACAQARVQLISPFVGRIYDWHKKAAGSDWDE-------TANAGA----HDPGVLSVKRIYNYYKAHDIPTEIMGASFRNIGQIRALAGCDLLTISPELLNELSQ-------STEPLEVQLDPEAARRNPPAREAS-----DEVAFRMGLNDDAMATEKLAEGIRNFCSDAVKLDA 311          
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Match: A0A0M4L3N2_9BURK (Transaldolase n=11 Tax=Burkholderiaceae TaxID=119060 RepID=A0A0M4L3N2_9BURK)

HSP 1 Score: 146 bits (369), Expect = 2.620e-38
Identity = 90/225 (40.00%), Postives = 123/225 (54.67%), Query Frame = 1
Query:    1 QAGFPRKRVLIKTPATWAGIRATGRLEREGIRCLVTLVCSRVQGQAAAEAGASMIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTDLKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPRVYPAGVPTSGNMAPKQETRRPSEPMSDHPSKL--DEQSFLAALGRDTCGTEVLRSSVEGFASDTTALEAAVA 669
            +AG PR+RVLIK  +TW GIRA   L+REGIRC +TL+ S VQ  A AEAGA +I+ +VGR+ DW++K A  +            N  A+    DPGV     + DY+   G  TEVMGASFRN DQ+ +LAGCD LTI+P L+ ++A               + AP +      +  + H +++  DE +F   L  D   TE L   +  FA+D   LE  +A
Sbjct:  133 RAGVPRERVLIKIASTWEGIRAAEVLQREGIRCNMTLLFSLVQAVACAEAGAQLISPFVGRILDWYRKQAGDKW-----------NPDANSGDADPGVHSVRQIYDYYKRFGYKTEVMGASFRNTDQILSLAGCDLLTISPELLEQLA--------------ASTAPVERKLSVDDAQAGHIARVHCDEPAFRWQLNEDAMATEKLAEGIRAFAADAVKLERLIA 332          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12291.1919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMM8_ECTSI7.640e-13590.31Transaldolase n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A7Z0ME10_9BURK2.640e-4140.91Transaldolase n=1 Tax=Alcaligenaceae bacterium Tax... [more]
A0A5P9JR96_9HYPH1.290e-3940.97Transaldolase n=3 Tax=Microvirga TaxID=186650 RepI... [more]
A0A7S2V3H4_9STRA1.130e-3843.18Transaldolase n=1 Tax=Fibrocapsa japonica TaxID=94... [more]
A0A2A2I6S9_9GAMM1.320e-3842.01Transaldolase n=2 Tax=Tamilnaduibacter salinus Tax... [more]
UPI001866E04F1.700e-3842.92transaldolase n=1 Tax=Microbulbifer hainanensis Ta... [more]
A0A0Q6EP03_9HYPH1.900e-3839.19Transaldolase n=1 Tax=Aurantimonas sp. Leaf443 Tax... [more]
A0A1H2F791_9PSED1.920e-3841.44Transaldolase n=1 Tax=Pseudomonas pohangensis TaxI... [more]
A0A7X6WZP7_9BURK2.550e-3840.91Transaldolase n=1 Tax=Alcaligenaceae bacterium Tax... [more]
A0A0M4L3N2_9BURK2.620e-3840.00Transaldolase n=11 Tax=Burkholderiaceae TaxID=1190... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12291contigEcto-sp13_S_contig12291:3031..4808 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score302.8
Seed ortholog evalue1.1e-79
Seed eggNOG ortholog2880.D8LMM8
Model size837
KEGG rclassRC00439,RC00604
KEGG koko:K00616
KEGG ReactionR01827
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity
EggNOG OGsCOG0176@1,KOG2772@2759
Ec32 ortholog descriptionTransaldolase
Ec32 orthologEc-06_003940.1
EC2.2.1.2
Cds size525
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462653.7657084-UTR-Ecto-sp13_S_contig12291:3030..31831681462653.7657084-UTR-Ecto-sp13_S_contig12291:3030..3183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12291 3031..3183 -
1681462653.8074636-UTR-Ecto-sp13_S_contig12291:4649..48081681462653.8074636-UTR-Ecto-sp13_S_contig12291:4649..4808Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12291 4650..4808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462653.7786908-CDS-Ecto-sp13_S_contig12291:3183..34491681462653.7786908-CDS-Ecto-sp13_S_contig12291:3183..3449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 3184..3449 -
1681462653.7888408-CDS-Ecto-sp13_S_contig12291:3834..40801681462653.7888408-CDS-Ecto-sp13_S_contig12291:3834..4080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 3835..4080 -
1681462653.7982788-CDS-Ecto-sp13_S_contig12291:4636..46491681462653.7982788-CDS-Ecto-sp13_S_contig12291:4636..4649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12291 4637..4649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12291.1919.1prot_Ecto-sp13_S_contig12291.1919.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12291 3184..4649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12291.1919.1

>prot_Ecto-sp13_S_contig12291.1919.1 ID=prot_Ecto-sp13_S_contig12291.1919.1|Name=mRNA_Ecto-sp13_S_contig12291.1919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MIATYVGRVSDWHKKAAAAETTGGAPAPPGTANAPASCASEDPGVTLTTD
LKDYFVAHGLPTEVMGASFRNADQVEALAGCDHLTIAPHLITEMARLPPR
VYPAGVPTSGNMAPKQETRRPSEPMSDHPSKLDEQSFLAALGRDTCGTEV
LRSSVEGFASDTTALEAAVAIAEQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig12291:3031..4808-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12291.1919.1 ID=mRNA_Ecto-sp13_S_contig12291.1919.1|Name=mRNA_Ecto-sp13_S_contig12291.1919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12291:3031..4808- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCGGCTTCCCCCGAAAGCGAGTATTGATTAAGACACCAGCCACCTG GGCTGGAATTCGAGCGACGGGGCGGCTGGAACGTGAAGGTATCAGGTGCT TGGTAACCCTTGTCTGTTCTCGGGTGCAAGGACAGGCGGCTGCGGAGGCC GGGGCTTCAATGATAGCAACATGTGAGTTTTCCTGGAGGCGAAAGGCGAG GATATTACATCTTTCGTCGAATTGACGCATTTTCTCTTAGCGCTTACGAT CTTCTCTCTCTCACTCTCTCTCACAACTCGGTCGGCAGGAGTGCTGACGA GTCCAGGAAGGGTGCAAAGGGAGCCGCCATCCGCCCAGCGTTGATTTTTT TTTTGTTGTCCTCAGCGGTCGTCATACATGGAAAGCAGAGGACAGTATAT CGCACACACTCCTCCTTCCTTCATGAGGTATGACCGTGTACAAACCTTCA CAAGCTCTTACTTGCTGCTGCATGCAGTTTGTTGTGGCCAGCATGCGAAC AAACAAGCCACAGCGCAATTTTTAGAGCGTCGTATGATTCTACGGCGTAC CTGGCTTTCGCCCGGAGCGGGTTGTGGTGTCTTGCTCATACTCGACCAAA CCTTGACTGCTGTTTTCCTCTTCCCCGCCCAACCTTTGCCTCCCCTTCCC TATTTTGTTTTAAACTTTTCCCCATTTTAAAACCCCTTCCCCCCCCCCCC CCCCCCCGGCCCACTCGAAAAATGTCAGATGTGGGGCGCGTTTCTGACTG GCACAAGAAGGCGGCGGCCGCGGAAACAACCGGCGGCGCTCCCGCCCCGC CCGGTACGGCAAACGCGCCAGCCTCCTGCGCGAGTGAAGACCCCGGCGTA ACGCTGACCACGGACCTCAAAGACTACTTTGTTGCTCACGGATTGCCCAC AGAGGTCATGGGGGCAAGTTTCCGAAACGCCGATCAGGTGGAAGCTCTGG CGGGGTGCGACCATCTTACAATAGGTGACCGCTGACGATATCGAGGAACA AGAAGTAGCGGAATTATTCGGAGTGCTGCTGCAAGCCAACGAAGAGACAA CTATGTTCGCGCACCCGCTGTGAACGCGGTGCCGAAGATTCTGCGTATTC GACGCACCAGAAATTTTCTGTCAAATTGAAAAGGTGCCGTGTCGTGCTAG AAAGATCATTTTCGGTCGAAGAGGTTTGATGGGCACGTGCGATGTCTGGT CCGTAACAACATGAGGCAGACTTGATAATGGACCCCCTGCATATCTTTCA CCAGACTCCCCCACTTCCGTAAATCGTTGGAAATGCTAAAGCTCTCTCAC TCTGCGCCCCCAATTCCCTGTCTGTCTCCACACCCCGGTGTTGCACCAAA CTTGTTCAGCTCCACATTTGATCACAGAAATGGCGCGACTTCCTCCGAGA GTCTATCCGGCTGGTGTGCCCACCAGCGGAAACATGGCCCCGAAGCAAGA AACGCGGAGGCCAAGCGAGCCGATGAGCGATCACCCGTCGAAACTGGACG AGCAATCGTTTCTCGCCGCCCTGGGTCGAGACACGTGCGGCACGGAAGTG CTTCGGTCGAGCGTCGAAGGCTTCGCGAGCGACACGACGGCCCTGGAAGC CGCAGTCGCGATTGCCGAGCAGTAGCTCTCAACGATTGCCGGTTGCAACG CAACCGTATGTTTGTGATCTGTCTCGAGACAAATATGTGGTAGATACATT TGACATCGCTGTTCACATTGGAGGAAGTATGTAGATGGTGAGAATAGTCC GTTAGCCTACCAAGAAGTCGCAATGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12291:3031..4808-

>mRNA_Ecto-sp13_S_contig12291.1919.1 ID=mRNA_Ecto-sp13_S_contig12291.1919.1|Name=mRNA_Ecto-sp13_S_contig12291.1919.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12291:3031..4808- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATAGCAACATATGTGGGGCGCGTTTCTGACTGGCACAAGAAGGCGGC
GGCCGCGGAAACAACCGGCGGCGCTCCCGCCCCGCCCGGTACGGCAAACG
CGCCAGCCTCCTGCGCGAGTGAAGACCCCGGCGTAACGCTGACCACGGAC
CTCAAAGACTACTTTGTTGCTCACGGATTGCCCACAGAGGTCATGGGGGC
AAGTTTCCGAAACGCCGATCAGGTGGAAGCTCTGGCGGGGTGCGACCATC
TTACAATAGCTCCACATTTGATCACAGAAATGGCGCGACTTCCTCCGAGA
GTCTATCCGGCTGGTGTGCCCACCAGCGGAAACATGGCCCCGAAGCAAGA
AACGCGGAGGCCAAGCGAGCCGATGAGCGATCACCCGTCGAAACTGGACG
AGCAATCGTTTCTCGCCGCCCTGGGTCGAGACACGTGCGGCACGGAAGTG
CTTCGGTCGAGCGTCGAAGGCTTCGCGAGCGACACGACGGCCCTGGAAGC
CGCAGTCGCGATTGCCGAGCAGTAG
back to top