mRNA_Ecto-sp13_S_contig7911.19190.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7911.19190.1
Unique NamemRNA_Ecto-sp13_S_contig7911.19190.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7911.19190.1 vs. uniprot
Match: D8LTI7_ECTSI (Rhodanese domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTI7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.310e-40
Identity = 76/79 (96.20%), Postives = 76/79 (96.20%), Query Frame = 1 
Query:   88 MEFSIGTCVETTLGTGVLVEIRQEDDVHVVRLWRSRGAGSAKAYLHPDAVLRELPAAVGVRVKTPEGDGVVVGFMSGGR 324
            M FSIGTCVETTLGTGVLVEIRQEDDVHVVRLWRSRGAGSAKAYLHP AVLRELPAAVGVRVKTPEGDGVVVGFMS GR
Sbjct:    1 MGFSIGTCVETTLGTGVLVEIRQEDDVHVVRLWRSRGAGSAKAYLHPGAVLRELPAAVGVRVKTPEGDGVVVGFMSRGR 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7911.19190.1 vs. uniprot
Match: A0A833SGW7_PHYIN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=A0A833SGW7_PHYIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.170e-8
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1 
Query:   79 ERGMEFSIGTCVETTLGTGVLVEIRQEDDVHVVRLWRSRGAGSAKAYLHPDAVLRELPAAVGVRVKTPEGDGVVV 303
            +R +   +G  V+TT G+GVL ++R++D +HVV L     +  A+AYLHP +V   + A+ G  V TP G GVV+
Sbjct: 1166 QRPVRGVVGKPVDTTYGSGVLEQVREDDGIHVVVLRLGLMSAQARAYLHPTSVFGAIKASRGDVVMTPFGSGVVM 1240
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7911.19190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTI7_ECTSI2.310e-4096.20Rhodanese domain-containing protein n=2 Tax=Ectoca... [more]
A0A833SGW7_PHYIN4.170e-841.33Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7911contigEcto-sp13_S_contig7911:1125..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score151.8
Seed ortholog evalue1.9e-34
Seed eggNOG ortholog2880.D8LTI7
Model size324
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28JPJ@1,2QS2W@2759
Cds size324
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464062.2783773-CDS-Ecto-sp13_S_contig7911:1124..12521681464062.2783773-CDS-Ecto-sp13_S_contig7911:1124..1252Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7911 1125..1252 -
1681464062.2896595-CDS-Ecto-sp13_S_contig7911:1861..20571681464062.2896595-CDS-Ecto-sp13_S_contig7911:1861..2057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7911 1862..2057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7911.19190.1prot_Ecto-sp13_S_contig7911.19190.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7911 1125..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7911.19190.1

>prot_Ecto-sp13_S_contig7911.19190.1 ID=prot_Ecto-sp13_S_contig7911.19190.1|Name=mRNA_Ecto-sp13_S_contig7911.19190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MIQASDGLLQVLHCSPGERRARERERERGMEFSIGTCVETTLGTGVLVEI
RQEDDVHVVRLWRSRGAGSAKAYLHPDAVLRELPAAVGVRVKTPEGDGVV
VGFMSGGR
back to top

mRNA from alignment at Ecto-sp13_S_contig7911:1125..2057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7911.19190.1 ID=mRNA_Ecto-sp13_S_contig7911.19190.1|Name=mRNA_Ecto-sp13_S_contig7911.19190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7911:1125..2057- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCAGGCAAGCGATGGCCTGTTGCAGGTTTTGCACTGCTCACCAGG
GGAGCGGAGGGCGAGAGAGAGAGAAAGAGAGAGAGGCATGGAGTTCAGCA
TAGGAACATGCGTGGAAACAACCTTGGGCACAGGAGTGCTCGTTGAAATC
CGCCAGGAGGATGATGTGCATGTCGTCCGCCTCTGGAGATCGAGAGGTAT
GGCAATAACATACTCTTCTGTGCAACAACAGTATTATCATAGTCGTTGGC
ACCGTCGTCTCGACCGCATTACACCACGTTACCCACCTTGCAAGCCCGAA
GTAACAACACCGCCAAACACACATGGTGTTGGGTGGGAAATCCTGACTTA
GCATGCCTCCTGAGGGAGCCTGCACTCTCATCTGGTTGCTATGTGTAGTA
TACCAGCATACCAGCCCCGACCCGTCTAAATCTTCTCATCTGGACCAGAA
CAAAAGAGTGCCACGGCGGTGATACTATTTTAGATACTGCTGTTTACTAG
TGCATGTGCGGAAGGGTCGTTGCCGCTGTATCGTAAGGCACTGCACGAGT
GTGCTGCTTCACCAAGTCCCTGCGCAGGAAGGATAGAAGTTGTTCTGATA
AGTGTCGAAGATGCTCTTTTAGCCCTCGCTCAGGCTACCCACCAGCTCGA
TTAATGAAGCTCCATTCTTTACATGTATGATACAACATACGAAACGCGTT
TACACACTAGCGGTGGGCCTGTGTCCTGATGCTTGTCATGGTATTCTTCG
ACCAACGAAATAAAAAACTTGCAGCCTGAGCTATTGTCCTTGCCAACGGC
TTCAGGTGCCGGCTCGGCGAAGGCCTACCTCCATCCCGACGCAGTCTTGC
GAGAGCTCCCTGCCGCCGTGGGGGTTCGAGTCAAGACTCCCGAGGGGGAT
GGTGTGGTCGTTGGGTTCATGAGCGGGGGGCGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7911:1125..2057-

>mRNA_Ecto-sp13_S_contig7911.19190.1 ID=mRNA_Ecto-sp13_S_contig7911.19190.1|Name=mRNA_Ecto-sp13_S_contig7911.19190.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7911:1125..2057- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCAGGCAAGCGATGGCCTGTTGCAGGTTTTGCACTGCTCACCAGG
GGAGCGGAGGGCGAGAGAGAGAGAAAGAGAGAGAGGCATGGAGTTCAGCA
TAGGAACATGCGTGGAAACAACCTTGGGCACAGGAGTGCTCGTTGAAATC
CGCCAGGAGGATGATGTGCATGTCGTCCGCCTCTGGAGATCGAGAGGTGC
CGGCTCGGCGAAGGCCTACCTCCATCCCGACGCAGTCTTGCGAGAGCTCC
CTGCCGCCGTGGGGGTTCGAGTCAAGACTCCCGAGGGGGATGGTGTGGTC
GTTGGGTTCATGAGCGGGGGGCGC
back to top