mRNA_Ecto-sp13_S_contig78803.19155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI) HSP 1 Score: 125 bits (315), Expect = 3.200e-32 Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1
Query: 1 HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY
Sbjct: 696 HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 754
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 8.850e-15 Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 4 GLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSK---------LESGEY 177
GLR+CV +L + ++ S WF +PVD V LNLP Y TI+KRPMDLGTVK+K LE+GEY
Sbjct: 329 GLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEY 395
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: UPI00125E3864 (transcription factor GTE8-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3864) HSP 1 Score: 70.5 bits (171), Expect = 9.550e-13 Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query: 7 LRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
L++C +L L +G EWFN+PVD V LN+P+Y TIIK+PMD GTVK KL SG Y
Sbjct: 166 LKKCEGLLRKLMTQKG-CEWFNQPVDVVKLNIPDYFTIIKQPMDFGTVKKKLTSGHY 221
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: UPI000E6F4E36 (transcription factor GTE3, chloroplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4E36) HSP 1 Score: 67.0 bits (162), Expect = 1.470e-12 Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query: 10 RRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
R+C +LNNL + F PVD V LNLP+Y T+IK+PMDLGTV+SK+ES +Y
Sbjct: 88 RKCNVILNNLIGYPYSKDTFGSPVDPVKLNLPDYYTLIKQPMDLGTVRSKMESDKY 143
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A2Z7DHP5_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7DHP5_9LAMI) HSP 1 Score: 68.6 bits (166), Expect = 4.550e-12 Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
+++C T+LN R + K W FNEPVD V LN+P+Y TIIK PMDLGT+K KL S +Y
Sbjct: 189 MKQCETLLN--RMMSQKDAWVFNEPVDVVKLNIPDYVTIIKHPMDLGTIKGKLRSNQY 244
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A8J4RZI6_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RZI6_9ROSI) HSP 1 Score: 68.6 bits (166), Expect = 4.560e-12 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
+ RC T+L N+ A + W FNEPVD V N+P+Y T+IK PMDLGT+KSKL SGEY
Sbjct: 227 MERCKTLLENMMA--HQYAWAFNEPVDVVKWNIPDYFTVIKHPMDLGTIKSKLASGEY 282
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A059CXU5_EUCGR (Uncharacterized protein n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CXU5_EUCGR) HSP 1 Score: 67.8 bits (164), Expect = 8.510e-12 Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
L++C TVLN+L + + W FN PVD V LN+P+Y T+IK PMDLGTVK KL SGEY
Sbjct: 205 LKQCETVLNHLMS--HQHGWVFNTPVDIVELNIPDYFTVIKHPMDLGTVKKKLLSGEY 260
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A1R3IZ82_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3IZ82_COCAP) HSP 1 Score: 67.0 bits (162), Expect = 1.590e-11 Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query: 1 HGLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
H +++C T+LN L ++ W FN PVD V LNLP+Y ++IK PMDLGTVK KL SG+Y
Sbjct: 205 HVMKQCETLLNRL--MQHNHGWVFNSPVDVVKLNLPDYFSVIKHPMDLGTVKKKLASGQY 262
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A061FYR6_THECC (Nuclear protein X1 isoform 6 n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061FYR6_THECC) HSP 1 Score: 66.6 bits (161), Expect = 2.160e-11 Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query: 1 HGLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
H +++C T+LN L ++ W FN PVD V LN+P+Y T+IK+PMDLGTVK +L SG+Y
Sbjct: 206 HLMKQCETLLNRL--MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQY 263
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A5N6RPV4_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RPV4_9ROSI) HSP 1 Score: 66.6 bits (161), Expect = 2.170e-11 Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query: 7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
+ +C +L N+R+ + W FNEPVD V LN+P+Y T+IK PMDLGTV+SK+ SGEY
Sbjct: 207 MEKCKMLLENMRS--HQFGWVFNEPVDVVKLNIPDYFTVIKHPMDLGTVRSKMTSGEY 262 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig78803.19155.1 >prot_Ecto-sp13_S_contig78803.19155.1 ID=prot_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVback to top mRNA from alignment at Ecto-sp13_S_contig78803:177..353+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig78803.19155.1 ID=mRNA_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78803:177..353+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78803:177..353+ >mRNA_Ecto-sp13_S_contig78803.19155.1 ID=mRNA_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78803:177..353+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |