mRNA_Ecto-sp13_S_contig78803.19155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig78803.19155.1
Unique NamemRNA_Ecto-sp13_S_contig78803.19155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: D8LRH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH3_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 3.200e-32
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 1
Query:    1 HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY
Sbjct:  696 HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 754          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A836CDK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDK9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 8.850e-15
Identity = 36/67 (53.73%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 GLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSK---------LESGEY 177
            GLR+CV +L  +  ++  S WF +PVD V LNLP Y TI+KRPMDLGTVK+K         LE+GEY
Sbjct:  329 GLRKCVNLLKQISTVKNLSHWFRDPVDPVALNLPTYLTIVKRPMDLGTVKAKRLSRIGSTHLEAGEY 395          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: UPI00125E3864 (transcription factor GTE8-like n=3 Tax=Ipomoea TaxID=4119 RepID=UPI00125E3864)

HSP 1 Score: 70.5 bits (171), Expect = 9.550e-13
Identity = 33/57 (57.89%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 LRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            L++C  +L  L   +G  EWFN+PVD V LN+P+Y TIIK+PMD GTVK KL SG Y
Sbjct:  166 LKKCEGLLRKLMTQKG-CEWFNQPVDVVKLNIPDYFTIIKQPMDFGTVKKKLTSGHY 221          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: UPI000E6F4E36 (transcription factor GTE3, chloroplastic-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F4E36)

HSP 1 Score: 67.0 bits (162), Expect = 1.470e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   10 RRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            R+C  +LNNL       + F  PVD V LNLP+Y T+IK+PMDLGTV+SK+ES +Y
Sbjct:   88 RKCNVILNNLIGYPYSKDTFGSPVDPVKLNLPDYYTLIKQPMDLGTVRSKMESDKY 143          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A2Z7DHP5_9LAMI (Uncharacterized protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7DHP5_9LAMI)

HSP 1 Score: 68.6 bits (166), Expect = 4.550e-12
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            +++C T+LN  R +  K  W FNEPVD V LN+P+Y TIIK PMDLGT+K KL S +Y
Sbjct:  189 MKQCETLLN--RMMSQKDAWVFNEPVDVVKLNIPDYVTIIKHPMDLGTIKGKLRSNQY 244          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A8J4RZI6_9ROSI (Uncharacterized protein n=1 Tax=Castanea mollissima TaxID=60419 RepID=A0A8J4RZI6_9ROSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.560e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            + RC T+L N+ A   +  W FNEPVD V  N+P+Y T+IK PMDLGT+KSKL SGEY
Sbjct:  227 MERCKTLLENMMA--HQYAWAFNEPVDVVKWNIPDYFTVIKHPMDLGTIKSKLASGEY 282          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A059CXU5_EUCGR (Uncharacterized protein n=3 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CXU5_EUCGR)

HSP 1 Score: 67.8 bits (164), Expect = 8.510e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            L++C TVLN+L +   +  W FN PVD V LN+P+Y T+IK PMDLGTVK KL SGEY
Sbjct:  205 LKQCETVLNHLMS--HQHGWVFNTPVDIVELNIPDYFTVIKHPMDLGTVKKKLLSGEY 260          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A1R3IZ82_COCAP (Uncharacterized protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3IZ82_COCAP)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 HGLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            H +++C T+LN L  ++    W FN PVD V LNLP+Y ++IK PMDLGTVK KL SG+Y
Sbjct:  205 HVMKQCETLLNRL--MQHNHGWVFNSPVDVVKLNLPDYFSVIKHPMDLGTVKKKLASGQY 262          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A061FYR6_THECC (Nuclear protein X1 isoform 6 n=2 Tax=Theobroma cacao TaxID=3641 RepID=A0A061FYR6_THECC)

HSP 1 Score: 66.6 bits (161), Expect = 2.160e-11
Identity = 32/60 (53.33%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 HGLRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            H +++C T+LN L  ++    W FN PVD V LN+P+Y T+IK+PMDLGTVK +L SG+Y
Sbjct:  206 HLMKQCETLLNRL--MQHNFGWVFNNPVDVVKLNIPDYLTVIKQPMDLGTVKKRLASGQY 263          
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Match: A0A5N6RPV4_9ROSI (Uncharacterized protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RPV4_9ROSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.170e-11
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    7 LRRCVTVLNNLRAIRGKSEW-FNEPVDYVGLNLPEYTTIIKRPMDLGTVKSKLESGEY 177
            + +C  +L N+R+   +  W FNEPVD V LN+P+Y T+IK PMDLGTV+SK+ SGEY
Sbjct:  207 MEKCKMLLENMRS--HQFGWVFNEPVDVVKLNIPDYFTVIKHPMDLGTVRSKMTSGEY 262          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig78803.19155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH3_ECTSI3.200e-32100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDK9_9STRA8.850e-1553.73Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00125E38649.550e-1357.89transcription factor GTE8-like n=3 Tax=Ipomoea Tax... [more]
UPI000E6F4E361.470e-1255.36transcription factor GTE3, chloroplastic-like n=1 ... [more]
A0A2Z7DHP5_9LAMI4.550e-1256.90Uncharacterized protein n=1 Tax=Dorcoceras hygrome... [more]
A0A8J4RZI6_9ROSI4.560e-1258.62Uncharacterized protein n=1 Tax=Castanea mollissim... [more]
A0A059CXU5_EUCGR8.510e-1260.34Uncharacterized protein n=3 Tax=Myrtoideae TaxID=1... [more]
A0A1R3IZ82_COCAP1.590e-1155.00Uncharacterized protein n=2 Tax=Corchorus TaxID=93... [more]
A0A061FYR6_THECC2.160e-1153.33Nuclear protein X1 isoform 6 n=2 Tax=Theobroma cac... [more]
A0A5N6RPV4_9ROSI2.170e-1155.17Uncharacterized protein n=1 Tax=Carpinus fangiana ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig78803contigEcto-sp13_S_contig78803:177..353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score126.3
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog2880.D8LRH3
Model size177
KEGG koko:K11684
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Cds size177
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464058.980309-CDS-Ecto-sp13_S_contig78803:176..3531681464058.980309-CDS-Ecto-sp13_S_contig78803:176..353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig78803 177..353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig78803.19155.1prot_Ecto-sp13_S_contig78803.19155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig78803 177..353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig78803.19155.1

>prot_Ecto-sp13_S_contig78803.19155.1 ID=prot_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
HGLRRCVTVLNNLRAIRGKSEWFNEPVDYVGLNLPEYTTIIKRPMDLGTV
KSKLESGEY
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mRNA from alignment at Ecto-sp13_S_contig78803:177..353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig78803.19155.1 ID=mRNA_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78803:177..353+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGCTGCGGCGTTGTGTTACGGTGTTGAACAACTTGCGGGCTATTCG AGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGACTCAACC TGCCAGAGTATACCACGATTATCAAGCGGCCGATGGATCTTGGCACCGTG AAATCAAAGCTGGAGAGCGGAGAGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig78803:177..353+

>mRNA_Ecto-sp13_S_contig78803.19155.1 ID=mRNA_Ecto-sp13_S_contig78803.19155.1|Name=mRNA_Ecto-sp13_S_contig78803.19155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78803:177..353+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGGGCTGCGGCGTTGTGTTACGGTGTTGAACAACTTGCGGGCTATTCG
AGGGAAGAGCGAGTGGTTCAACGAGCCGGTGGACTACGTCGGACTCAACC
TGCCAGAGTATACCACGATTATCAAGCGGCCGATGGATCTTGGCACCGTG
AAATCAAAGCTGGAGAGCGGAGAGTAC
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