mRNA_Ecto-sp13_S_contig7859.19129.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7859.19129.1
Unique NamemRNA_Ecto-sp13_S_contig7859.19129.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: D8LDZ0_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDZ0_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 8.710e-71
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE
Sbjct:    4 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 115          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A835Z3J6_9STRA (Putative 26S proteasome non-ATPase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J6_9STRA)

HSP 1 Score: 195 bits (495), Expect = 1.840e-59
Identity = 92/113 (81.42%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDEV 339
            LDNSEWMRNGDYIPTRMEAQHDAANL+CG+KT SNPESTVGVLTMAG GPELLVSPTDDMGKILSSLH V + G+T  +A +QIAQLALKHRRNKHGGQR+++FV+SP+ D+V
Sbjct:   10 LDNSEWMRNGDYIPTRMEAQHDAANLVCGTKTQSNPESTVGVLTMAGTGPELLVSPTDDMGKILSSLHDVKIGGRTCVSAAVQIAQLALKHRRNKHGGQRLVLFVASPVTDDV 122          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A7S2V4F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F9_9STRA)

HSP 1 Score: 187 bits (474), Expect = 3.870e-55
Identity = 89/112 (79.46%), Postives = 100/112 (89.29%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDYIPTRME+QHDAANLLCG+K  SNPESTVGVL+MAG+  ELLVSPTDDMGKIL+SLH V + G+ N AA +QIAQLALKHRRNKHGGQR++IFV SP+ DE
Sbjct:   40 LDNSEWMRNGDYIPTRMESQHDAANLLCGAKIQSNPESTVGVLSMAGRRVELLVSPTDDMGKILASLHEVPIQGRLNLAAAVQIAQLALKHRRNKHGGQRVVIFVGSPVLDE 151          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A2R5G3W1_9STRA (26S proteasome non-ATPase regulatory subunit 4-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3W1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 6.830e-52
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDY+PTRMEAQHDA+NL+CGSKT  NPESTVG++T AG G E+L SPTDDMG+ILS+   + V GK NFAAG+QIAQLALKHR+NK+GGQRI++FV SP+E E
Sbjct:    4 LDNSEWMRNGDYMPTRMEAQHDASNLVCGSKTQQNPESTVGIMTCAGAGVEVLCSPTDDMGRILSATANIRVGGKANFAAGLQIAQLALKHRKNKNGGQRIVMFVGSPVEAE 115          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A7S2RPK5_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RPK5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.640e-51
Identity = 81/112 (72.32%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGD+ PTRMEAQHDAANL+CGSKT  NPESTVG+LTMAG G ++L SPTDDMGKIL++   V V G TNF  G+QIAQLALKHR+NK+GGQR+++F+ SPI+ E
Sbjct:   10 LDNSEWMRNGDFTPTRMEAQHDAANLVCGSKTQQNPESTVGILTMAGSGVQVLCSPTDDMGKILTASASVKVGGNTNFPGGLQIAQLALKHRKNKNGGQRVVVFIGSPIDAE 121          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A0W8DJJ6_PHYNI (VWFA domain-containing protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DJJ6_PHYNI)

HSP 1 Score: 168 bits (426), Expect = 2.150e-50
Identity = 76/112 (67.86%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDYIP+R+EAQHDAANLLCG+KT +NPESTVGVL MAGK  ++L SPTD+MG +LS++H + + G    A  IQ+AQLALKHRRNK GGQR+++F+ SPIE++
Sbjct:   10 LDNSEWMRNGDYIPSRLEAQHDAANLLCGTKTQANPESTVGVLAMAGKSVQVLASPTDNMGTLLSAIHRIKIGGSMKLANAIQVAQLALKHRRNKTGGQRVVVFIGSPIEED 121          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A0P1B661_PLAHL (Multiubiquitin chain binding protein mbp1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B661_PLAHL)

HSP 1 Score: 171 bits (432), Expect = 4.090e-50
Identity = 77/112 (68.75%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDYIP+R+EAQHDAANLLCG+KT +NPESTVGVL MAGK  ++L SPTD+MG +LS++HGV + G    +  IQ+AQLALKHRRNK GGQR+++F+ SPIE++
Sbjct:   10 LDNSEWMRNGDYIPSRLEAQHDAANLLCGTKTQANPESTVGVLAMAGKSVQVLASPTDNMGTLLSAIHGVKIGGSMKLSNAIQVAQLALKHRRNKTGGQRVVVFIGSPIEED 121          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A3R7GT30_9STRA (VWFA domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GT30_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.180e-49
Identity = 79/112 (70.54%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            LDNSEWMRNGDYIP+R+EAQHDAANLLCG+KT SNPESTVGVL MAGK  ++L SPTD+MG +LS++H V V G    A  IQ+AQLALKHRRNK GGQR+++F+ SPIE++
Sbjct:   10 LDNSEWMRNGDYIPSRLEAQHDAANLLCGTKTQSNPESTVGVLAMAGKSTQVLASPTDNMGTLLSAIHRVKVGGTMKLANSIQVAQLALKHRRNKTGGQRVVVFIGSPIEED 121          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A7S0V842_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0V842_9CRYP)

HSP 1 Score: 165 bits (418), Expect = 2.390e-49
Identity = 77/112 (68.75%), Postives = 93/112 (83.04%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDE 336
            +DNSEWMRNGDYIPTRME+Q DA NL+C  KT  NPESTVGV+T AG+GPE+LV+PT D+GKIL++LH V + G TNF   IQ+AQLALKHR+NK+  QRII FV SP+ED+
Sbjct:   23 VDNSEWMRNGDYIPTRMESQADAVNLICNVKTQQNPESTVGVMTSAGRGPEVLVTPTQDLGKILTALHNVKITGSTNFVGTIQVAQLALKHRQNKNQRQRIIAFVGSPLEDD 134          
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Match: A0A8K1FNX1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNX1_PYTOL)

HSP 1 Score: 169 bits (427), Expect = 3.420e-49
Identity = 78/113 (69.03%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 LDNSEWMRNGDYIPTRMEAQHDAANLLCGSKTNSNPESTVGVLTMAGKGPELLVSPTDDMGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPI-EDE 336
            LDNSEWMRNGDYIP+R+EAQHDAANLLCG+KT SNPESTVG+LTMAGKG ++L SPT++MG +L+++H VS+ G   F+  +Q+AQLALKHRRNK G QR+++F+ SPI EDE
Sbjct:   10 LDNSEWMRNGDYIPSRLEAQHDAANLLCGAKTQSNPESTVGILTMAGKGVQVLASPTENMGTLLTAVHNVSIGGALKFSNALQVAQLALKHRRNKTGAQRVVVFIGSPIVEDE 122          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7859.19129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDZ0_ECTSI8.710e-71100.00VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z3J6_9STRA1.840e-5981.42Putative 26S proteasome non-ATPase regulatory subu... [more]
A0A7S2V4F9_9STRA3.870e-5579.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2R5G3W1_9STRA6.830e-5274.1126S proteasome non-ATPase regulatory subunit 4-lik... [more]
A0A7S2RPK5_9STRA2.640e-5172.32Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A0W8DJJ6_PHYNI2.150e-5067.86VWFA domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0P1B661_PLAHL4.090e-5068.75Multiubiquitin chain binding protein mbp1 n=1 Tax=... [more]
A0A3R7GT30_9STRA1.180e-4970.54VWFA domain-containing protein n=4 Tax=Phytophthor... [more]
A0A7S0V842_9CRYP2.390e-4968.75Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A8K1FNX1_PYTOL3.420e-4969.03Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7859contigEcto-sp13_S_contig7859:717..1564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.9306889-UTR-Ecto-sp13_S_contig7859:716..7331681464056.9306889-UTR-Ecto-sp13_S_contig7859:716..733Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7859 717..733 -
1681464056.9661756-UTR-Ecto-sp13_S_contig7859:1539..15641681464056.9661756-UTR-Ecto-sp13_S_contig7859:1539..1564Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7859 1540..1564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.942796-CDS-Ecto-sp13_S_contig7859:733..9561681464056.942796-CDS-Ecto-sp13_S_contig7859:733..956Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7859 734..956 -
1681464056.9544487-CDS-Ecto-sp13_S_contig7859:1447..15391681464056.9544487-CDS-Ecto-sp13_S_contig7859:1447..1539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7859 1448..1539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7859.19129.1prot_Ecto-sp13_S_contig7859.19129.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7859 734..1539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7859.19129.1

>prot_Ecto-sp13_S_contig7859.19129.1 ID=prot_Ecto-sp13_S_contig7859.19129.1|Name=mRNA_Ecto-sp13_S_contig7859.19129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
METTSPPGWRHSTTRLTFSAAARPTPTRRARSAFSPWPGRAPSSWSAPPT
TWARSCPPSTACPSTARPTSRRASRSPSSRSSTVVTSTGGRGSSSLCRLL
SRTR*
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mRNA from alignment at Ecto-sp13_S_contig7859:717..1564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7859.19129.1 ID=mRNA_Ecto-sp13_S_contig7859.19129.1|Name=mRNA_Ecto-sp13_S_contig7859.19129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7859:717..1564- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGACAACTCTGAGTGGATGAGAAATGGAGACTACATCCCCACCCGGAT GGAGGCACAGCACGACGCGGCTAACCTTCTCTGCGGCAGCAAGACCAACT CCAACCCGGAGAGCACGGTGAGATGAGCGATCTGGGAGGGGTTTCGGGGT GAGGGAGGCCCCAACATGGAGTTTACACGAACACGATTTGCTGGGAAGGC GGATGAGTACGCACCACACCTTCTTCTTGGTGCAATATGTACAACACTGG ATATGTTGAGCAATGGGTGGACCCCACCCCACCTTCCTGACCAGCTTCTG GTTCATCCTTGTGAAACGCACGGAACCTGACCCGGCATTTCGCTCCGTCC CGGCATTATGAGGATGCGAGGTCGTCAATGGTCTAACGTCTACAGCAGTC AGCGTGCGTTGTTTTTTGAGTACCCTTCCCCCTTTCGTGTGACCCATGTA CGTACATTTTTCTTCATTTTTTGGTTTTCATATTCTTTCCTTTGACCCAA TTTTGTTCTTCTCATTTTCGTGATTTTTTTCATTTCTTCGTACCTGTGAA CCCATCATTTTGTTTCCCTTTTCATTTTTGTGCGTCGACGGCAACGACAC ATACATAGGTCGGCGTTCTCACCATGGCCGGGAAGGGCCCCGAGCTCCTG GTCAGCCCCACCGACGACATGGGCAAGATCCTGTCCTCCCTCCACGGCGT GTCCGTCCACGGCAAGACCAACTTCGCGGCGGGCATCCAGATCGCCCAGC TCGCGCTCAAGCACCGTCGTAACAAGCACGGGGGGCAGAGGATCATCATC TTTGTGTCGTCTCCTATCGAGGACGAGGTAGGGTGGATGGATATGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7859:717..1564-

>mRNA_Ecto-sp13_S_contig7859.19129.1 ID=mRNA_Ecto-sp13_S_contig7859.19129.1|Name=mRNA_Ecto-sp13_S_contig7859.19129.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7859:717..1564- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACTACATCCCCACCCGGATGGAGGCACAGCACGACGCGGCTAAC
CTTCTCTGCGGCAGCAAGACCAACTCCAACCCGGAGAGCACGGTCGGCGT
TCTCACCATGGCCGGGAAGGGCCCCGAGCTCCTGGTCAGCCCCACCGACG
ACATGGGCAAGATCCTGTCCTCCCTCCACGGCGTGTCCGTCCACGGCAAG
ACCAACTTCGCGGCGGGCATCCAGATCGCCCAGCTCGCGCTCAAGCACCG
TCGTAACAAGCACGGGGGGCAGAGGATCATCATCTTTGTGTCGTCTCCTA
TCGAGGACGAGGTAG
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