mRNA_Ecto-sp13_S_contig7853.19122.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7853.19122.1
Unique NamemRNA_Ecto-sp13_S_contig7853.19122.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: D8LR11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR11_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 1.260e-80
Identity = 121/167 (72.46%), Postives = 131/167 (78.44%), Query Frame = 1
Query:    1 PGCEALWCRGGYSRNSFDTTMHILRTRILKTSPFISLQHFIQGYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTDP 501
            P CEA WCRGGYSR+  +  + +      KT+  IS      GY PR+TG+G G D AL  F    +TG L+EVPGIGP+FSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIG  RGRIVQCIAEKVNMSYPGIYD  AWTDP
Sbjct:    2 PSCEAPWCRGGYSRSRRNLCVWLAG----KTA--ISAGQQKTGYHPRQTGVGEGPDPALEAFKKAPITGLLSEVPGIGPKFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGF-RGRIVQCIAEKVNMSYPGIYDREAWTDP 161          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: D8LR07_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR07_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 2.690e-75
Identity = 106/126 (84.13%), Postives = 112/126 (88.89%), Query Frame = 1
Query:  124 QGYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTDP 501
            QGYDP +TG+G G D AL  F    +TG L+EVPGIGP FSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGG RGRIVQCIAEKVNMSYPGIY+S+AWT P
Sbjct:   13 QGYDPTQTGVGVGPDPALEAFNEAPITGLLSEVPGIGPAFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGVRGRIVQCIAEKVNMSYPGIYNSKAWTGP 138          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: D8LR09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR09_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.450e-58
Identity = 86/126 (68.25%), Postives = 101/126 (80.16%), Query Frame = 1
Query:  124 QGYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTDP 501
            +G++PR+TG+  G D AL  F    +TG L+EVPGIGP   GLLGEGEG+DC+KNTFQLIGKFLVLR S +EDG+LIDCVEHCDKFYWWL+SK +   RGRIVQCIA K N+SYPGIYD+  W DP
Sbjct:   28 KGFNPRQTGVKEGPDPALEAFKKAPITGLLSEVPGIGPTAVGLLGEGEGDDCVKNTFQLIGKFLVLRGS-KEDGQLIDCVEHCDKFYWWLKSKAVDNYRGRIVQCIAVKTNLSYPGIYDTDKWEDP 152          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 2.200e-37
Identity = 65/124 (52.42%), Postives = 86/124 (69.35%), Query Frame = 1
Query:  127 GYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTD 498
            GYDP+R+ +    D  L +F    +TG LTEVPGI  R + +L +GEG+D + NT+QLIGKFL LR  ++ D + +D VEHCDKF++WLQ+KGI   R  IV  IAEKVN   PGIYD+ ++TD
Sbjct:    5 GYDPKRSKVS---DDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHE-VDSVEHCDKFWYWLQAKGINSNRSGIVNAIAEKVNTWIPGIYDADSYTD 124          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: A0A2D4C4D0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D0_PYTIN)

HSP 1 Score: 129 bits (323), Expect = 1.930e-35
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 1
Query:  124 QGYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNE--EDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDS 483
            +GYDP+++ +    +  L DF    LTG LTEVPGIG    G L  GE  D ++NTFQLIGKFL+L+ S +  EDG LIDC EHCD F++WL+SKGI   R  IV  IAEKVN   PGIYD+
Sbjct:    3 EGYDPQKSRVA---EDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDG-LIDCAEHCDAFWYWLKSKGIQAYRSGIVMAIAEKVNTMLPGIYDA 120          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: D0P1T3_PHYIT (Uncharacterized protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0P1T3_PHYIT)

HSP 1 Score: 126 bits (316), Expect = 2.290e-34
Identity = 65/121 (53.72%), Postives = 80/121 (66.12%), Query Frame = 1
Query:  127 GYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGE-GEDCIKNTFQLIGKFLVLRT-SNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDS 483
            GYDP+++ +    +  L DF    LTG LTEVPGIG      LGE E GED + NTFQLIGKFL+L+  S++ D  +IDC  HCD F++WL+SKGI   R  IV  IAEKVN   PGIYD+
Sbjct:    4 GYDPQKSRVA---EDTLADFLRAPLTGDLTEVPGIGKAAVAKLGEAEDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDA 121          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: K0QZN8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0QZN8_THAOC)

HSP 1 Score: 125 bits (315), Expect = 3.650e-34
Identity = 60/125 (48.00%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  124 QGYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTD 498
            QGYDP+R+ +    D +L DF    + G +TEVPGIGP  +  L EGE ++CI NT+QLIGKFL+L+  + +D K ++ +EHC+KF++WLQ K I   R  IV+ IA KVN   PG+YD+  + D
Sbjct:    4 QGYDPKRSRVS---DDSLMDFIRAQVQGDITEVPGIGPAAAKKLAEGEHDECITNTYQLIGKFLMLKGPDTDDNK-VESMEHCEKFWYWLQDKQISAHRSAIVKAIAMKVNGLLPGVYDADLYDD 124          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: K3WZ09_GLOUD (Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WZ09_GLOUD)

HSP 1 Score: 125 bits (314), Expect = 4.590e-34
Identity = 64/120 (53.33%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  127 GYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLR-TSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDS 483
            GYDP+++ +    +  L DF    LTG LTEVPGIGP     L  GE  D + NTFQLIGKFL+L+  S+E D  L+DC  HCD F++WL+SKGI   R  IV  IAEKVN   PGIYD+
Sbjct:    5 GYDPQKSRVA---EDTLADFLRAPLTGDLTEVPGIGPAAVTKLAAGEDGDQVGNTFQLIGKFLLLKKNSDENDDGLLDCAAHCDAFWFWLKSKGITAYRSGIVMAIAEKVNTMLPGIYDA 121          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: A0A8K1CPA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CPA9_PYTOL)

HSP 1 Score: 123 bits (309), Expect = 2.550e-33
Identity = 65/120 (54.17%), Postives = 81/120 (67.50%), Query Frame = 1
Query:  127 GYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQLIGKFLVLRTSNEE-DGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDS 483
            GYDP+++ +   VD  L DF    LTG L EVPGIG   +G L  GE  D ++NTFQLIGKFL+L+ S EE D  LIDC +HC+ F++WL++KGI   R  IV  IAEKVN   PGIYD+
Sbjct:    4 GYDPQKSRVA--VD-TLADFLRAPLTGDLKEVPGIGDIAAGKLAAGEDGDRVENTFQLIGKFLMLKASLEENDDGLIDCADHCNAFWFWLKAKGISAYRSGIVMAIAEKVNTMLPGIYDA 120          
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Match: A0A7S2R0A3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0A3_9STRA)

HSP 1 Score: 122 bits (305), Expect = 1.420e-32
Identity = 62/125 (49.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  127 GYDPRRTGIGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGE-DCIKNTFQLIGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEKVNMSYPGIYDSRAWTD 498
            GYDP R+ +    D  +TDF    +TG +TEVPGIGP     L  G+ E D I NTFQLIGKFL+L+  +E+D K IDC+EH +KF++WL+ KGI   R  IV+ I EK+N   PGIYD+  + +
Sbjct:    6 GYDPSRSKVS---DSTMTDFLRSQITGDVTEVPGIGPAAKRALAGGDDESDRITNTFQLIGKFLMLKGPDEDDMK-IDCMEHMEKFWYWLKQKGIKSHRSAIVKAIGEKINTMIPGIYDASIYAE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7853.19122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR11_ECTSI1.260e-8072.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LR07_ECTSI2.690e-7584.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LR09_ECTSI1.450e-5868.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ44_ECTSI2.200e-3752.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2D4C4D0_PYTIN1.930e-3554.92Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0P1T3_PHYIT2.290e-3453.72Uncharacterized protein n=18 Tax=Peronosporaceae T... [more]
K0QZN8_THAOC3.650e-3448.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K3WZ09_GLOUD4.590e-3453.33Uncharacterized protein n=2 Tax=Pythiaceae TaxID=4... [more]
A0A8K1CPA9_PYTOL2.550e-3354.17Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2R0A3_9STRA1.420e-3249.60Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7853contigEcto-sp13_S_contig7853:5715..7226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score245.0
Seed ortholog evalue2.5e-62
Seed eggNOG ortholog2880.D8LR11
Model size501
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2ARS8@1,2RZN0@2759
Cds size501
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.4899743-CDS-Ecto-sp13_S_contig7853:5714..57851681464056.4899743-CDS-Ecto-sp13_S_contig7853:5714..5785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7853 5715..5785 +
1681464056.50642-CDS-Ecto-sp13_S_contig7853:5855..60031681464056.50642-CDS-Ecto-sp13_S_contig7853:5855..6003Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7853 5856..6003 +
1681464056.5187042-CDS-Ecto-sp13_S_contig7853:6181..63131681464056.5187042-CDS-Ecto-sp13_S_contig7853:6181..6313Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7853 6182..6313 +
1681464056.5305166-CDS-Ecto-sp13_S_contig7853:6605..67231681464056.5305166-CDS-Ecto-sp13_S_contig7853:6605..6723Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7853 6606..6723 +
1681464056.5422988-CDS-Ecto-sp13_S_contig7853:7194..72261681464056.5422988-CDS-Ecto-sp13_S_contig7853:7194..7226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7853 7195..7226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7853.19122.1prot_Ecto-sp13_S_contig7853.19122.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7853 5715..7226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7853.19122.1

>prot_Ecto-sp13_S_contig7853.19122.1 ID=prot_Ecto-sp13_S_contig7853.19122.1|Name=mRNA_Ecto-sp13_S_contig7853.19122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=167bp
PGCEALWCRGGYSRNSFDTTMHILRTRILKTSPFISLQHFIQGYDPRRTG
IGSGVDQALTDFTNVVLTGRLTEVPGIGPRFSGLLGEGEGEDCIKNTFQL
IGKFLVLRTSNEEDGKLIDCVEHCDKFYWWLQSKGIGGGRGRIVQCIAEK
VNMSYPGIYDSRAWTDP
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mRNA from alignment at Ecto-sp13_S_contig7853:5715..7226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7853.19122.1 ID=mRNA_Ecto-sp13_S_contig7853.19122.1|Name=mRNA_Ecto-sp13_S_contig7853.19122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7853:5715..7226+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGCTGTGAGGCCCTTTGGTGCCGTGGCGGATATTCACGGAACTCCTT CGACACTACGATGCACATACTGTACTGCATTATGGCGGTCCGAAACAATA CATTTAGGCGCTACTTACAGTAGCACATGTTGCCCTGAAAGACGAACCCG TATCCTAAAAACGTCGCCGTTTATTTCGTTGCAACATTTTATACAGGGAT ACGACCCAAGACGGACCGGGATTGGGTCCGGAGTCGATCAGGCGCTTACG GACTTCACGAATGTCGTACTGACGGGACGTCTAACCGAGGTAGCAGCCAA AGAAAGGGAGTCAAAACCACTCTAGACTACAGTGCATGACTCGACAACGG CTCTATTTAGTAATTGCCTTAGACGGTAAACAGCTACAGACTGGCATCGA AGTACTTCCCAAGGCAATACATCGTGAACTCTAATCTTGTGTACCCGTGC ATACCGTCCTCCTGAAGGTTCCCGGTATCGGACCTCGATTCTCTGGCCTA CTGGGAGAAGGGGAAGGCGAGGACTGCATCAAGAACACGTTCCAGCTGAT CGGGAAGTTCTTGGTGTTGCGAACATCGAATGAAGAAGATGGAAAGCTGG TGCGCGCTACTGCAGTCGGGGTGTACGTTCGGTCATGTCATGAAGTCAAA TGTCATTGCATAGACTACAGTGGGGTCACAACATGCTGCCCGTACGGTAT CTGCAACGTCTTTGTCTGATGGTCAACATGGCTTCGGCGATCGACCAGGG AGCGCTTGGTCTTGGCCGCGCACTAAACCTCTTGCAGGCAGTAGACATCG GGCAATATCGGCTCCGTGTACCTTCGCATACATTAAAGATCGAATACTGT TTCACATTCCTGTCGGTGTGTTCTGTTTGTTTCTGTTGAAGATCGATTGC GTCGAGCACTGCGACAAATTTTATTGGTGGCTGCAGTCCAAAGGAATCGG CGGTGGTCGTGGTCGCATCGTCCAATGCATTGCCGAGAAGGTCAACATGT CGTACCCTGGTGAGCTACTGTAGAAATGGCGCTTGGCGGTAGACATATTA GAGTGTGCAATCTAGGTGAGGAATCCCGGCGTCCCCAAGTCCTACAGTGG TCGGTCGAAGAAAGGATATACTCGGTGTAGACTATATGTTGTGCTCTATT GCAGTCTACGTATGTATGTTTGTATCTAGTCTCTGCTGTACAGTTCATGC AAAAAATCTATTGTAGATGTGCACCGACGGCATGGAACATTCGATTACCG GCACGGAAGCCAATCTCCGGCCTCCGCATGACGAGCGAAATCAACTGCAA TGGTAGCGAACAGCAGCTGCCACAGATCTTATGCCTGCTTCGGTTTTGGT CGAACATCCACCGTCCGTGCGTACTACAGTAGTACTGTAGACAGCAGTGT CCGCCACCCGAGGAATACCTTCTTCTCCTCGAATCCCGTCTCCACCCTCT TGCCCCCCCCACTACTACCACCTCTTGCAGGAATTTACGACAGTAGGGCG TGGACTGACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7853:5715..7226+

>mRNA_Ecto-sp13_S_contig7853.19122.1 ID=mRNA_Ecto-sp13_S_contig7853.19122.1|Name=mRNA_Ecto-sp13_S_contig7853.19122.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7853:5715..7226+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGGCTGTGAGGCCCTTTGGTGCCGTGGCGGATATTCACGGAACTCCTT
CGACACTACGATGCACATACTACGAACCCGTATCCTAAAAACGTCGCCGT
TTATTTCGTTGCAACATTTTATACAGGGATACGACCCAAGACGGACCGGG
ATTGGGTCCGGAGTCGATCAGGCGCTTACGGACTTCACGAATGTCGTACT
GACGGGACGTCTAACCGAGGTTCCCGGTATCGGACCTCGATTCTCTGGCC
TACTGGGAGAAGGGGAAGGCGAGGACTGCATCAAGAACACGTTCCAGCTG
ATCGGGAAGTTCTTGGTGTTGCGAACATCGAATGAAGAAGATGGAAAGCT
GATCGATTGCGTCGAGCACTGCGACAAATTTTATTGGTGGCTGCAGTCCA
AAGGAATCGGCGGTGGTCGTGGTCGCATCGTCCAATGCATTGCCGAGAAG
GTCAACATGTCGTACCCTGGAATTTACGACAGTAGGGCGTGGACTGACCC
C
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