mRNA_Ecto-sp13_S_contig7852.19120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7852.19120.1
Unique NamemRNA_Ecto-sp13_S_contig7852.19120.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: D7G1X2_ECTSI (Hypothetical inner membrane leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X2_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 3.510e-64
Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
            +VLNAGTHGVGFV AIIGA +LMTEASQEGKSPEHFWGCAIFS SLMFLYLASTLYH    +    GLLCIADHCAIYILIAGSYTPFMLISMHGSSLG TVIIAQWLCALFGCLFSMT
Sbjct:  245 EVLNAGTHGVGFVAAIIGAFLLMTEASQEGKSPEHFWGCAIFSASLMFLYLASTLYHSFFMLPYVSGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGRTVIIAQWLCALFGCLFSMT 363          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.490e-34
Identity = 63/120 (52.50%), Postives = 91/120 (75.83%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIG-LLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
            +VLN+ +H +GF+ +IIG  +LM+EAS   +SP  FW CA+FS SLM LYL+STL+H   F+  H+  +L IADH AIY+LIAGSYTPF++I +HGS++G  V++ +W+ AL G +FS++
Sbjct:  220 EVLNSLSHALGFIMSIIGTILLMSEASGPERSPVQFWACAVFSTSLMILYLSSTLFHSF-FVVPHVAYILQIADHVAIYLLIAGSYTPFLMIGLHGSTIGGVVVVVEWVAALVGSIFSIS 338          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A6V1P304_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P304_HETAK)

HSP 1 Score: 115 bits (288), Expect = 8.730e-28
Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
            +VLNA +H +GFV A IGA  L+ EA   G S  H W CAI+S  LMFLY++STLYH    +     +L I DHCAIY LIAG+Y+P M+I +  S     V+I +WL    GC+FS++
Sbjct:  231 EVLNAMSHAIGFVAAAIGAATLLGEAYATG-SARHIWACAIYSSCLMFLYISSTLYHSFFMLPLTNKILKICDHCAIYTLIAGTYSPLMMIGLRHSPTAVVVVIMEWLLCFLGCVFSIS 348          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC)

HSP 1 Score: 112 bits (279), Expect = 3.050e-26
Identity = 50/118 (42.37%), Postives = 80/118 (67.80%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSM 354
            ++LN+ THG+GF+ +++G  +LM+ AS  G +P H+W C +FS+SLM LY++S+LYH    +     +L I DH  IY+LIAGSY+P M+I++H S   + +++ +WL A  G   S+
Sbjct:  302 EILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYHSFFMLPHAKDVLQILDHVGIYLLIAGSYSPIMMIALHHSHRANLLLLLEWLTAFGGICVSI 419          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A7S3MG12_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG12_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.800e-23
Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFS 351
            ++LN+ +HG+ F+ A++GA IL+++A+    S  HFW C I+S +LMFL+L+S L+H        + +L + DH  IY++IAGS TPFML+++H  +    +I  +W+ A  G +F+
Sbjct:  214 EILNSVSHGLAFLGAVVGANILISDAADVQGSSYHFWACVIYSFALMFLFLSSCLFHSFFMSPTTMRVLQVLDHVGIYLVIAGSMTPFMLVALHHHTAARVLICGEWIAAFLGSVFA 330          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A192H3Y8_9LACO (Hemolysin III n=3 Tax=Loigolactobacillus TaxID=2767889 RepID=A0A192H3Y8_9LACO)

HSP 1 Score: 98.6 bits (244), Expect = 5.810e-23
Identity = 50/116 (43.10%), Postives = 80/116 (68.97%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLF 348
            +VLNA THG+GFV +++G   L+ +A+  G++  +     I+ ++LM LYL+STL+H L F +A   +  + DHC+IY+LIAGSYTP+ LI++H ++LG  +    W+ A+FG +F
Sbjct:   19 EVLNAVTHGIGFVLSVVGLIFLLIKANTIGQTVAY----TIYGITLMILYLSSTLFHSLIFTRAK-SVFQVFDHCSIYLLIAGSYTPYCLIALH-NTLGYVLCAVIWVLAIFGVIF 128          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: D4YGL7_AERVM (Channel protein, hemolysin III family n=8 Tax=Aerococcus TaxID=1375 RepID=D4YGL7_AERVM)

HSP 1 Score: 98.6 bits (244), Expect = 6.940e-23
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFG 339
            +VLN+ THG+GFV +I+    L+ +  +   S E F    ++ +S+  LYLASTLYH  SF KA  G+L I DH +I+ILIAGSYTPF L+++ G + G  + IAQW  ALFG
Sbjct:   24 EVLNSVTHGIGFVLSIVATVFLIHKGVENQNSIEIF-SYVVYGISMCALYLASTLYHSFSFTKAA-GILKIIDHSSIFILIAGSYTPFALVAI-GGAFGWFIFIAQWAIALFG 133          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: UPI001E36F272 (hemolysin III family protein n=1 Tax=Marinibactrum sp. C21 TaxID=2904075 RepID=UPI001E36F272)

HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21
Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMTR---CVWVGVISRCVIPW 402
            +V NA THGVG + +I    +L+T AS E   P      +I+  SL  LYLASTLYH + F +A   +L + DHCAIY+LIAG+YTPF+L+S+ G++ G ++    W   + G +  +TR     W+ VI+  V+ W
Sbjct:   27 EVFNAITHGVGALVSISAVTLLITMASIE-TDPWTIVAVSIYGASLFLLYLASTLYHSIPFPRAK-RVLRLFDHCAIYLLIAGTYTPFLLVSLGGTA-GWSLFALVWTLGIIGIVLQLTRQGKYHWLHVINYIVMGW 160          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A256BPQ8_9LACT (Hemolysin III n=2 Tax=unclassified Aerococcus TaxID=2618060 RepID=A0A256BPQ8_9LACT)

HSP 1 Score: 94.7 bits (234), Expect = 2.130e-21
Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFG 339
            +VLN+ THG+GF+ +I+ A I +       ++P       I+ +S+  LYLASTLYH LSF KA  G+L I DH +I++LIAGSYTP+ L+++ G   G  + IAQWL A  G
Sbjct:   24 EVLNSITHGIGFILSIV-ATIFLIRKGLTNENPIEIVSYIIYGLSMCMLYLASTLYHSLSFTKAS-GILKIIDHSSIFLLIAGSYTPYALVAI-GGKFGWFIFIAQWLIAFLG 133          
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A0R1KA36_9LACO (Hemolysin III n=3 Tax=Companilactobacillus TaxID=2767879 RepID=A0A0R1KA36_9LACO)

HSP 1 Score: 93.6 bits (231), Expect = 5.220e-21
Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSM 354
            ++ +A THG+G + AIIGA  L+ +  ++G  P       I++ +L FLYL+STL+H L F KA  G+  I DH +I+++IAG+YTP+ L+++ GS+ G  ++   W+ A+ G L+ +
Sbjct:   17 EIFSAVTHGIGIILAIIGAVFLLIKGFKQGD-PLEITAYFIYAFTLFFLYLSSTLFHSLYFTKAK-GVFQIFDHSSIFLMIAGTYTPYCLVALRGSAFGIIILSTIWILAILGILYKI 132          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1X2_ECTSI3.510e-6487.39Hypothetical inner membrane leucine rich repeat pr... [more]
A0A835ZJF6_9STRA1.490e-3452.50Inner membrane leucine rich repeat protein n=1 Tax... [more]
A0A6V1P304_HETAK8.730e-2848.74Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YVT8_NANGC3.050e-2642.37Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072... [more]
A0A7S3MG12_9STRA1.800e-2339.32Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A192H3Y8_9LACO5.810e-2343.10Hemolysin III n=3 Tax=Loigolactobacillus TaxID=276... [more]
D4YGL7_AERVM6.940e-2348.67Channel protein, hemolysin III family n=8 Tax=Aero... [more]
UPI001E36F2721.710e-2141.61hemolysin III family protein n=1 Tax=Marinibactrum... [more]
A0A256BPQ8_9LACT2.130e-2146.02Hemolysin III n=2 Tax=unclassified Aerococcus TaxI... [more]
A0A0R1KA36_9LACO5.220e-2138.98Hemolysin III n=3 Tax=Companilactobacillus TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7852contigEcto-sp13_S_contig7852:2697..3917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score207.6
Seed ortholog evalue3.6e-51
Seed eggNOG ortholog2880.D7G1X2
Model size405
Hectar predicted targeting categorysignal peptide
Exons2
EggNOG free text desc.Haemolysin-III related
EggNOG OGs2D5AR@1,2SXY1@2759
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464056.3488305-CDS-Ecto-sp13_S_contig7852:2696..28931681464056.3488305-CDS-Ecto-sp13_S_contig7852:2696..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7852 2697..2893 +
1681464056.3623183-CDS-Ecto-sp13_S_contig7852:3709..39171681464056.3623183-CDS-Ecto-sp13_S_contig7852:3709..3917Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7852 3710..3917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7852.19120.1prot_Ecto-sp13_S_contig7852.19120.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7852 2697..3917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7852.19120.1

>prot_Ecto-sp13_S_contig7852.19120.1 ID=prot_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLY
LASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGS
TVIIAQWLCALFGCLFSMTRCVWVGVISRCVIPWC
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mRNA from alignment at Ecto-sp13_S_contig7852:2697..3917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7852.19120.1 ID=mRNA_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7852:2697..3917+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTTGAACGCCGGCACTCACGGGGTCGGGTTCGTGACTGCCATAAT CGGGGCGTGCATACTCATGACGGAGGCTTCCCAGGAGGGAAAGAGCCCCG AGCACTTCTGGGGCTGCGCGATATTCTCGGTCAGCCTGATGTTCCTCTAC CTGGCATCGACTCTCTACCACAGGTTATCTTTTATGAAAGCGCACATGTT TATTTATTGTTTTCTTGGTAAACACTACTCGTATATGTAGGACTATATAT ATGTATTTATTTGTTCTAAGTACATGACAGAGAAACCATCTCTATCCACG GATGAAAGTCCAGGGTAACATTGTAATAGCACGTGGCATATACAACTCTT GAAGCCCAGAAAAACGTGTTCATTTTTTTAAGAACATGGGGGGCTGAAGG TACATTCCGAAAAACGCGAAAAATTGAGAGACGCTGTGCTTGAAGCGGCA GGTCACAAGAAAAGATTTAACAACAAGATCCTATCCAATGTGTAAGTAGG AAGTAGCTGTTTCTTGACGTTGAGGATTGAAGTGAGATCTTTGAACTTCG CAAAGATACTTGTTACGTGGAGGTTTAGGTTGTCGGTTTCAGCGATTGTG TGTTGTCGGCGCTACCTTGTGGCAAGCCTGGTTTTCCTCTGCCTAGATGG CGTCGACTCCTTCCCACAACAGGGGTTTAGGTATACGATGTATAGTACTC CTATATAGCAATACACGCACGTCACTCAAACTTCGGAGTGTTTCGTACGA TGTTGAAACATCGCTCTTCTTCCCTCAATGAAGTAACTCAGCTTTCGACT GTGGTTATACATATCTCAAATGGGCAGTCTTTCTTTTTTCATGTATTGCC TATTTTCTGTTTTCTGAAAACAAACTCATGTCAATATTTTTCGCCCCCTG CCCAACTGCTGCCCCCTCCCCCCCCCTCTTGTTTTTTTTTCTCCGTTCTT CTTTTTTTTGCTCTCTTTGTTTTCTTTGCCTGGGGTCAGCTTCTTCATGC TACCGTACGTGAGCGGCCTCCTCTGCATCGCCGATCACTGCGCGATCTAT ATCCTCATCGCCGGCAGCTACACCCCGTTCATGCTCATCTCGATGCACGG GAGCTCCCTCGGGAGTACGGTCATCATCGCGCAGTGGCTATGCGCTCTCT TCGGCTGCCTCTTCAGCATGACAAGGTGTGTGTGGGTGGGTGTCATCTCA CGTTGTGTGATACCATGGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7852:2697..3917+

>mRNA_Ecto-sp13_S_contig7852.19120.1 ID=mRNA_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7852:2697..3917+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTTGAACGCCGGCACTCACGGGGTCGGGTTCGTGACTGCCATAAT
CGGGGCGTGCATACTCATGACGGAGGCTTCCCAGGAGGGAAAGAGCCCCG
AGCACTTCTGGGGCTGCGCGATATTCTCGGTCAGCCTGATGTTCCTCTAC
CTGGCATCGACTCTCTACCACAGGTTATCTTTTATGAAAGCGCACATCGG
CCTCCTCTGCATCGCCGATCACTGCGCGATCTATATCCTCATCGCCGGCA
GCTACACCCCGTTCATGCTCATCTCGATGCACGGGAGCTCCCTCGGGAGT
ACGGTCATCATCGCGCAGTGGCTATGCGCTCTCTTCGGCTGCCTCTTCAG
CATGACAAGGTGTGTGTGGGTGGGTGTCATCTCACGTTGTGTGATACCAT
GGTGT
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