mRNA_Ecto-sp13_S_contig7852.19120.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: D7G1X2_ECTSI (Hypothetical inner membrane leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X2_ECTSI) HSP 1 Score: 210 bits (534), Expect = 3.510e-64 Identity = 104/119 (87.39%), Postives = 107/119 (89.92%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
+VLNAGTHGVGFV AIIGA +LMTEASQEGKSPEHFWGCAIFS SLMFLYLASTLYH + GLLCIADHCAIYILIAGSYTPFMLISMHGSSLG TVIIAQWLCALFGCLFSMT
Sbjct: 245 EVLNAGTHGVGFVAAIIGAFLLMTEASQEGKSPEHFWGCAIFSASLMFLYLASTLYHSFFMLPYVSGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGRTVIIAQWLCALFGCLFSMT 363
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.490e-34 Identity = 63/120 (52.50%), Postives = 91/120 (75.83%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIG-LLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
+VLN+ +H +GF+ +IIG +LM+EAS +SP FW CA+FS SLM LYL+STL+H F+ H+ +L IADH AIY+LIAGSYTPF++I +HGS++G V++ +W+ AL G +FS++
Sbjct: 220 EVLNSLSHALGFIMSIIGTILLMSEASGPERSPVQFWACAVFSTSLMILYLSSTLFHSF-FVVPHVAYILQIADHVAIYLLIAGSYTPFLMIGLHGSTIGGVVVVVEWVAALVGSIFSIS 338
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A6V1P304_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P304_HETAK) HSP 1 Score: 115 bits (288), Expect = 8.730e-28 Identity = 58/119 (48.74%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMT 357
+VLNA +H +GFV A IGA L+ EA G S H W CAI+S LMFLY++STLYH + +L I DHCAIY LIAG+Y+P M+I + S V+I +WL GC+FS++
Sbjct: 231 EVLNAMSHAIGFVAAAIGAATLLGEAYATG-SARHIWACAIYSSCLMFLYISSTLYHSFFMLPLTNKILKICDHCAIYTLIAGTYSPLMMIGLRHSPTAVVVVIMEWLLCFLGCVFSIS 348
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC) HSP 1 Score: 112 bits (279), Expect = 3.050e-26 Identity = 50/118 (42.37%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSM 354
++LN+ THG+GF+ +++G +LM+ AS G +P H+W C +FS+SLM LY++S+LYH + +L I DH IY+LIAGSY+P M+I++H S + +++ +WL A G S+
Sbjct: 302 EILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYHSFFMLPHAKDVLQILDHVGIYLLIAGSYSPIMMIALHHSHRANLLLLLEWLTAFGGICVSI 419
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A7S3MG12_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MG12_9STRA) HSP 1 Score: 103 bits (258), Expect = 1.800e-23 Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFS 351
++LN+ +HG+ F+ A++GA IL+++A+ S HFW C I+S +LMFL+L+S L+H + +L + DH IY++IAGS TPFML+++H + +I +W+ A G +F+
Sbjct: 214 EILNSVSHGLAFLGAVVGANILISDAADVQGSSYHFWACVIYSFALMFLFLSSCLFHSFFMSPTTMRVLQVLDHVGIYLVIAGSMTPFMLVALHHHTAARVLICGEWIAAFLGSVFA 330
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A192H3Y8_9LACO (Hemolysin III n=3 Tax=Loigolactobacillus TaxID=2767889 RepID=A0A192H3Y8_9LACO) HSP 1 Score: 98.6 bits (244), Expect = 5.810e-23 Identity = 50/116 (43.10%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLF 348
+VLNA THG+GFV +++G L+ +A+ G++ + I+ ++LM LYL+STL+H L F +A + + DHC+IY+LIAGSYTP+ LI++H ++LG + W+ A+FG +F
Sbjct: 19 EVLNAVTHGIGFVLSVVGLIFLLIKANTIGQTVAY----TIYGITLMILYLSSTLFHSLIFTRAK-SVFQVFDHCSIYLLIAGSYTPYCLIALH-NTLGYVLCAVIWVLAIFGVIF 128
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: D4YGL7_AERVM (Channel protein, hemolysin III family n=8 Tax=Aerococcus TaxID=1375 RepID=D4YGL7_AERVM) HSP 1 Score: 98.6 bits (244), Expect = 6.940e-23 Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFG 339
+VLN+ THG+GFV +I+ L+ + + S E F ++ +S+ LYLASTLYH SF KA G+L I DH +I+ILIAGSYTPF L+++ G + G + IAQW ALFG
Sbjct: 24 EVLNSVTHGIGFVLSIVATVFLIHKGVENQNSIEIF-SYVVYGISMCALYLASTLYHSFSFTKAA-GILKIIDHSSIFILIAGSYTPFALVAI-GGAFGWFIFIAQWAIALFG 133
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: UPI001E36F272 (hemolysin III family protein n=1 Tax=Marinibactrum sp. C21 TaxID=2904075 RepID=UPI001E36F272) HSP 1 Score: 95.1 bits (235), Expect = 1.710e-21 Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSMTR---CVWVGVISRCVIPW 402
+V NA THGVG + +I +L+T AS E P +I+ SL LYLASTLYH + F +A +L + DHCAIY+LIAG+YTPF+L+S+ G++ G ++ W + G + +TR W+ VI+ V+ W
Sbjct: 27 EVFNAITHGVGALVSISAVTLLITMASIE-TDPWTIVAVSIYGASLFLLYLASTLYHSIPFPRAK-RVLRLFDHCAIYLLIAGTYTPFLLVSLGGTA-GWSLFALVWTLGIIGIVLQLTRQGKYHWLHVINYIVMGW 160
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A256BPQ8_9LACT (Hemolysin III n=2 Tax=unclassified Aerococcus TaxID=2618060 RepID=A0A256BPQ8_9LACT) HSP 1 Score: 94.7 bits (234), Expect = 2.130e-21 Identity = 52/113 (46.02%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFG 339
+VLN+ THG+GF+ +I+ A I + ++P I+ +S+ LYLASTLYH LSF KA G+L I DH +I++LIAGSYTP+ L+++ G G + IAQWL A G
Sbjct: 24 EVLNSITHGIGFILSIV-ATIFLIRKGLTNENPIEIVSYIIYGLSMCMLYLASTLYHSLSFTKAS-GILKIIDHSSIFLLIAGSYTPYALVAI-GGKFGWFIFIAQWLIAFLG 133
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Match: A0A0R1KA36_9LACO (Hemolysin III n=3 Tax=Companilactobacillus TaxID=2767879 RepID=A0A0R1KA36_9LACO) HSP 1 Score: 93.6 bits (231), Expect = 5.220e-21 Identity = 46/118 (38.98%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 1 KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYLASTLYHRLSFMKAHIGLLCIADHCAIYILIAGSYTPFMLISMHGSSLGSTVIIAQWLCALFGCLFSM 354
++ +A THG+G + AIIGA L+ + ++G P I++ +L FLYL+STL+H L F KA G+ I DH +I+++IAG+YTP+ L+++ GS+ G ++ W+ A+ G L+ +
Sbjct: 17 EIFSAVTHGIGIILAIIGAVFLLIKGFKQGD-PLEITAYFIYAFTLFFLYLSSTLFHSLYFTKAK-GVFQIFDHSSIFLMIAGTYTPYCLVALRGSAFGIIILSTIWILAILGILYKI 132 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7852.19120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7852.19120.1 >prot_Ecto-sp13_S_contig7852.19120.1 ID=prot_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp KVLNAGTHGVGFVTAIIGACILMTEASQEGKSPEHFWGCAIFSVSLMFLYback to top mRNA from alignment at Ecto-sp13_S_contig7852:2697..3917+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7852.19120.1 ID=mRNA_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7852:2697..3917+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7852:2697..3917+ >mRNA_Ecto-sp13_S_contig7852.19120.1 ID=mRNA_Ecto-sp13_S_contig7852.19120.1|Name=mRNA_Ecto-sp13_S_contig7852.19120.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7852:2697..3917+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |