mRNA_Ecto-sp13_S_contig12273.1911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12273.1911.1
Unique NamemRNA_Ecto-sp13_S_contig12273.1911.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: D7FPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU0_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 1.930e-67
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1
Query:    1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKV 327
            MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLER GTAPG+AEGE GAGVR+RSTRLDFVLCADCVFEPLYGDSWKALAKV
Sbjct:   77 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGTAPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKV 185          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A6H5KZX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX5_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.200e-57
Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 1
Query:   13 LLGATVV---LTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKV 327
            L+GATVV       DELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLAS+ER GT PG+AEGE GAGVR+RSTRLDFVLCADCVFEPLYGDSWKALAKV
Sbjct:   84 LVGATVVELGCGMFDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASMERSGTVPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKV 191          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S3Y709_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y709_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 6.550e-13
Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 1
Query:    1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKVTS 333
            MVA+ LGA  V LTEQ+ L+ LL +N+  NF+   +    I  + LDW  E + + L  +L                        +DF++C DCV+EPLYGDSWKAL  V +
Sbjct:   14 MVAKALGAGPVALTEQEGLMKLLGKNIRSNFSTEEQRT--IFAQELDWSSEENIENLKQNL---------------------GQPIDFLICCDCVYEPLYGDSWKALVHVVA 102          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S2JWZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWZ0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.890e-12
Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWK 312
            M+ARL+G  V+LT+Q+ LL+ L  N++ NF    RG+  I+ EALDW RE +   LL + +                        D VL  DCVFEPLYG+SWK
Sbjct:  146 MIARLMGGRVILTDQESLLNQLRFNIESNF----RGDDYIKAEALDWSRE-EVQKLLNNTDNH-------------------QGFDIVLNCDCVFEPLYGESWK 225          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: L1J9I4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J9I4_GUITC)

HSP 1 Score: 66.2 bits (160), Expect = 7.760e-11
Identity = 39/107 (36.45%), Postives = 47/107 (43.93%), Query Frame = 1
Query:    1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
            M  R+LG  V+LTEQ +L+ LLD NL  NF+G       IR E   W  E                           +R       FVL  DC+F PLYGDSW+ LA
Sbjct:   78 MCCRILGGEVLLTEQPQLIPLLDENLQRNFSGDAH----IRAEPFSWGEEC-----------------------AKSIRAEHGSFRFVLACDCIFAPLYGDSWRLLA 157          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: F0X125_9STRA (Uncharacterized protein AlNc14C546G12115 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X125_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.160e-10
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNF------AGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
            M AR+ GA +V+LTEQ++L+ L+ RNL GN       A + + E  I    L W +E+  + L+   +                      ++DFVL  DC+F PLYGDSWKALA
Sbjct:  107 MAARIAGAESVILTEQEDLVDLMHRNLKGNANALGLDAANDKKEQAIVGRVLSWGKESIHNYLMTYQDE---------------------QIDFVLSCDCIFVPLYGDSWKALA 199          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A836CJX9_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-10
Identity = 47/116 (40.52%), Postives = 55/116 (47.41%), Query Frame = 1
Query:    1 MVARLLGATVVLTEQDELLSLLDRNLDGNF----------AGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKAL 318
            MVA LLGA+ VLTEQ ELL LL RNL  NF          +   R    I    LDW  + D   LL   + F                      DF+L ADC++EPLYG+SWKAL
Sbjct:   76 MVAHLLGASAVLTEQAELLGLLRRNLAANFGVAHASASQVSSRRRTAPFISAAQLDWATD-DPRALLR--DHF-----------------EGAHPDFILSADCIYEPLYGESWKAL 171          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A485LF75_9STRA (Aste57867_19896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF75_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.780e-10
Identity = 44/108 (40.74%), Postives = 55/108 (50.93%), Query Frame = 1
Query:    1 MVARLLGAT-VVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
            MVA LLGA  VV+TEQ EL+ LL  N+  NF     G   +   AL W+R A T    A  + FGT                    D VL  DC+++PLYG+SW+ALA
Sbjct:   87 MVASLLGAKDVVITEQPELVPLLRTNIRRNFQTIDAGRS-VAAAALSWDRAAAT----AFCDTFGT-------------------FDIVLSCDCIYQPLYGESWRALA 170          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S1U5T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5T4_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 5.140e-10
Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    4 VARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
            VA  LGA VV+TEQ EL+ LL +N   NFAG    +  +R  ALDW   A ++      E FG                     D VL +D V+EPLYGDSW+ALA
Sbjct:  117 VAAALGADVVITEQQELVRLLAQNAARNFAGEAAQQVSVR--ALDWSAAAASE----ITEAFGG-------------------WDVVLASDVVYEPLYGDSWQALA 197          
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A024FZ75_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ75_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.620e-10
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNFAG---HP---RGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
            M AR+ GA +V+LTEQ++L+ L+ RN+  N      HP   + E  I    L W +E+    +   L+ +                    ++DFVL  DC+FEPLYGDSWKALA
Sbjct:   98 MAARIAGADSVILTEQEDLVDLIHRNIKSNANALGLHPANDKKEQAIVGRVLSWGKES----INTYLKTY-----------------HDEQIDFVLSCDCIFEPLYGDSWKALA 190          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU0_ECTSI1.930e-6796.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KZX5_9PHAE2.200e-5787.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3Y709_HETAK6.550e-1337.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2JWZ0_9STRA1.890e-1240.38Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
L1J9I4_GUITC7.760e-1136.45Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
F0X125_9STRA1.160e-1036.84Uncharacterized protein AlNc14C546G12115 n=1 Tax=A... [more]
A0A836CJX9_9STRA1.740e-1040.52Putative methyltransferase-domain-containing prote... [more]
A0A485LF75_9STRA4.780e-1040.74Aste57867_19896 protein n=1 Tax=Aphanomyces stella... [more]
A0A7S1U5T4_9STRA5.140e-1041.51Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A024FZ75_9STRA7.620e-1036.84Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12273contigEcto-sp13_S_contig12273:4356..5102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score215.3
Seed ortholog evalue1.4e-53
Seed eggNOG ortholog2880.D7FPU0
Model size336
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-18_001690.1
Cds size336
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.874275-CDS-Ecto-sp13_S_contig12273:4355..46301681462652.874275-CDS-Ecto-sp13_S_contig12273:4355..4630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12273 4356..4630 +
1681462652.885418-CDS-Ecto-sp13_S_contig12273:5041..51021681462652.885418-CDS-Ecto-sp13_S_contig12273:5041..5102Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12273 5042..5102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12273.1911.1prot_Ecto-sp13_S_contig12273.1911.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12273 4356..5102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12273.1911.1

>prot_Ecto-sp13_S_contig12273.1911.1 ID=prot_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWERE
ADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYG
DSWKALAKVTS*
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mRNA from alignment at Ecto-sp13_S_contig12273:4356..5102+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12273.1911.1 ID=mRNA_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:4356..5102+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCCGTCTCCTCGGGGCTACCGTTGTCCTCACTGAGCAGGACGA GCTCCTCAGCCTCCTGGACAGAAATCTCGACGGCAACTTCGCGGGGCACC CGCGGGGCGAGGGCGGCATCCGGAGAGAAGCGCTAGACTGGGAGAGGGAG GCGGACACGGACGGCCTTCTTGCCTCCCTGGAGCGTTTTGGCACTGCACC GGGAAAAGCAGAGGGGGAAACTGGAGCGGGCGTCCGGAAGAGGTCGACGC GGCTCGACTTCGTCCTCTGCGCAGAGTGAGATGGCAAAGGAGTTCTGTGT CTGTAGCTCATGTAGTTGGACCTGGTGAGGTCCCTAGAGGCCTTGTGATT TTTTTTCAAGGAGAGGCGAAGGTTACAACCAGGGTAACATGAACAGCAGA TGCGAATCGATCTGTCCTCCGCAAATAGCGTCCGCACTGCTATGTATATT ACGTCAATTTGTTAGTGCCTGCAAGTGCCGAACTATTCCTAAGCAGGGCC CTACTCCTGCGCAAGCTGCGCAAGCTGCGCTAGAAGCCTGCCGGGCACAG CGAGATACTGCGAGAAGTCTTGGACTTGTCAATCGTGAAGCAGCATCACT AAACCCTTACCGAAACGTACCATTCTGTCCTCTTTATCTTCTCATCACGG CTAACACGAATCTATCTGGTGGGGTTGGCGGCGAAGCTGCGTGTTCGAGC CGCTGTACGGCGACTCCTGGAAGGCGTTGGCCAAGGTGACGTCATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12273:4356..5102+

>mRNA_Ecto-sp13_S_contig12273.1911.1 ID=mRNA_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:4356..5102+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTGCCCGTCTCCTCGGGGCTACCGTTGTCCTCACTGAGCAGGACGA
GCTCCTCAGCCTCCTGGACAGAAATCTCGACGGCAACTTCGCGGGGCACC
CGCGGGGCGAGGGCGGCATCCGGAGAGAAGCGCTAGACTGGGAGAGGGAG
GCGGACACGGACGGCCTTCTTGCCTCCCTGGAGCGTTTTGGCACTGCACC
GGGAAAAGCAGAGGGGGAAACTGGAGCGGGCGTCCGGAAGAGGTCGACGC
GGCTCGACTTCGTCCTCTGCGCAGACTGCGTGTTCGAGCCGCTGTACGGC
GACTCCTGGAAGGCGTTGGCCAAGGTGACGTCATAG
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