mRNA_Ecto-sp13_S_contig12273.1911.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: D7FPU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPU0_ECTSI) HSP 1 Score: 213 bits (543), Expect = 1.930e-67 Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1
Query: 1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKV 327
MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLER GTAPG+AEGE GAGVR+RSTRLDFVLCADCVFEPLYGDSWKALAKV
Sbjct: 77 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERSGTAPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKV 185
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A6H5KZX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX5_9PHAE) HSP 1 Score: 188 bits (477), Expect = 2.200e-57 Identity = 94/108 (87.04%), Postives = 98/108 (90.74%), Query Frame = 1
Query: 13 LLGATVV---LTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKV 327
L+GATVV DELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLAS+ER GT PG+AEGE GAGVR+RSTRLDFVLCADCVFEPLYGDSWKALAKV
Sbjct: 84 LVGATVVELGCGMFDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASMERSGTVPGEAEGEPGAGVRRRSTRLDFVLCADCVFEPLYGDSWKALAKV 191
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S3Y709_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y709_HETAK) HSP 1 Score: 70.9 bits (172), Expect = 6.550e-13 Identity = 42/112 (37.50%), Postives = 58/112 (51.79%), Query Frame = 1
Query: 1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALAKVTS 333
MVA+ LGA V LTEQ+ L+ LL +N+ NF+ + I + LDW E + + L +L +DF++C DCV+EPLYGDSWKAL V +
Sbjct: 14 MVAKALGAGPVALTEQEGLMKLLGKNIRSNFSTEEQRT--IFAQELDWSSEENIENLKQNL---------------------GQPIDFLICCDCVYEPLYGDSWKALVHVVA 102
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S2JWZ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWZ0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.890e-12 Identity = 42/104 (40.38%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWK 312
M+ARL+G V+LT+Q+ LL+ L N++ NF RG+ I+ EALDW RE + LL + + D VL DCVFEPLYG+SWK
Sbjct: 146 MIARLMGGRVILTDQESLLNQLRFNIESNF----RGDDYIKAEALDWSRE-EVQKLLNNTDNH-------------------QGFDIVLNCDCVFEPLYGESWK 225
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: L1J9I4_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J9I4_GUITC) HSP 1 Score: 66.2 bits (160), Expect = 7.760e-11 Identity = 39/107 (36.45%), Postives = 47/107 (43.93%), Query Frame = 1
Query: 1 MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
M R+LG V+LTEQ +L+ LLD NL NF+G IR E W E +R FVL DC+F PLYGDSW+ LA
Sbjct: 78 MCCRILGGEVLLTEQPQLIPLLDENLQRNFSGDAH----IRAEPFSWGEEC-----------------------AKSIRAEHGSFRFVLACDCIFAPLYGDSWRLLA 157
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: F0X125_9STRA (Uncharacterized protein AlNc14C546G12115 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X125_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.160e-10 Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNF------AGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
M AR+ GA +V+LTEQ++L+ L+ RNL GN A + + E I L W +E+ + L+ + ++DFVL DC+F PLYGDSWKALA
Sbjct: 107 MAARIAGAESVILTEQEDLVDLMHRNLKGNANALGLDAANDKKEQAIVGRVLSWGKESIHNYLMTYQDE---------------------QIDFVLSCDCIFVPLYGDSWKALA 199
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A836CJX9_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJX9_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.740e-10 Identity = 47/116 (40.52%), Postives = 55/116 (47.41%), Query Frame = 1
Query: 1 MVARLLGATVVLTEQDELLSLLDRNLDGNF----------AGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKAL 318
MVA LLGA+ VLTEQ ELL LL RNL NF + R I LDW + D LL + F DF+L ADC++EPLYG+SWKAL
Sbjct: 76 MVAHLLGASAVLTEQAELLGLLRRNLAANFGVAHASASQVSSRRRTAPFISAAQLDWATD-DPRALLR--DHF-----------------EGAHPDFILSADCIYEPLYGESWKAL 171
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A485LF75_9STRA (Aste57867_19896 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LF75_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 4.780e-10 Identity = 44/108 (40.74%), Postives = 55/108 (50.93%), Query Frame = 1
Query: 1 MVARLLGAT-VVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
MVA LLGA VV+TEQ EL+ LL N+ NF G + AL W+R A T A + FGT D VL DC+++PLYG+SW+ALA
Sbjct: 87 MVASLLGAKDVVITEQPELVPLLRTNIRRNFQTIDAGRS-VAAAALSWDRAAAT----AFCDTFGT-------------------FDIVLSCDCIYQPLYGESWRALA 170
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A7S1U5T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5T4_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 5.140e-10 Identity = 44/106 (41.51%), Postives = 54/106 (50.94%), Query Frame = 1
Query: 4 VARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
VA LGA VV+TEQ EL+ LL +N NFAG + +R ALDW A ++ E FG D VL +D V+EPLYGDSW+ALA
Sbjct: 117 VAAALGADVVITEQQELVRLLAQNAARNFAGEAAQQVSVR--ALDWSAAAASE----ITEAFGG-------------------WDVVLASDVVYEPLYGDSWQALA 197
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Match: A0A024FZ75_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZ75_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 7.620e-10 Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 1 MVARLLGA-TVVLTEQDELLSLLDRNLDGNFAG---HP---RGEGGIRREALDWEREADTDGLLASLERFGTAPGKAEGETGAGVRKRSTRLDFVLCADCVFEPLYGDSWKALA 321
M AR+ GA +V+LTEQ++L+ L+ RN+ N HP + E I L W +E+ + L+ + ++DFVL DC+FEPLYGDSWKALA
Sbjct: 98 MAARIAGADSVILTEQEDLVDLIHRNIKSNANALGLHPANDKKEQAIVGRVLSWGKES----INTYLKTY-----------------HDEQIDFVLSCDCIFEPLYGDSWKALA 190 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12273.1911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12273.1911.1 >prot_Ecto-sp13_S_contig12273.1911.1 ID=prot_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp MVARLLGATVVLTEQDELLSLLDRNLDGNFAGHPRGEGGIRREALDWEREback to top mRNA from alignment at Ecto-sp13_S_contig12273:4356..5102+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12273.1911.1 ID=mRNA_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:4356..5102+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12273:4356..5102+ >mRNA_Ecto-sp13_S_contig12273.1911.1 ID=mRNA_Ecto-sp13_S_contig12273.1911.1|Name=mRNA_Ecto-sp13_S_contig12273.1911.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12273:4356..5102+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |