mRNA_Ecto-sp13_S_contig7844.19108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7844.19108.1
Unique NamemRNA_Ecto-sp13_S_contig7844.19108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A6H5KT30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT30_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 1.640e-49
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 1
Query:    1 VLSHVREALPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            VLS+VREALP WRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR
Sbjct:   90 VLSYVREALPGWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 176          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: D7G1J0_ECTSI (Choline/ethanolamine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J0_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 5.690e-49
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 1
Query:    1 VLSHVREALPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            VLS+VREALP WRTLPDGDIQLKQITGGITNVIFKARN ATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR
Sbjct:   77 VLSYVREALPGWRTLPDGDIQLKQITGGITNVIFKARNTATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 163          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A6B2L936_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L936_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.740e-12
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   19 EALPRWRTLPDGDIQLKQITGGITNVIFKA---------RNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            + LP W+ +P   ++ K+ITGG+TN++ K              T   ALVR +GKDT++   R  E+ +F+ LS+ G GP+ LG F GGR
Sbjct:   10 DVLPGWKAIPTKYLETKRITGGLTNILTKVFVRPDYVPQLPPGTLHQALVRTFGKDTEVFFSRNMESLIFASLSSSGVGPKLLGTFPGGR 99          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A813IQZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IQZ4_POLGL)

HSP 1 Score: 70.9 bits (172), Expect = 2.090e-12
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1
Query:   34 WRTLPDGDIQLKQITGGITNVIFKAR---NAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            WR  PD D ++K ITGG+TN+++K      AA     LVR +GK  D + DR  E  VF +LS  GFGPR  G F  GR
Sbjct:   44 WREAPDADFEVKVITGGLTNLLYKVSLCCPAADPPTVLVRAFGKAGDAVCDRSMENKVFQDLSKAGFGPRLFGLFGNGR 122          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: D8LQ37_ECTSI (Choline/ethanolamine kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ37_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 2.100e-12
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    4 LSHVREALPR--WRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            + HV +++ +  W   P  DI +  I GGITN++FK +        LVR++GKDTD+L+DR ++ A+F EL+++ + P   G F  GR
Sbjct:   20 VKHVAKSVMKGAWLDYPTEDIVVTTIGGGITNLLFKLQGPPAEAAILVRIFGKDTDVLIDRERDNALFDELASMKYAPPFHGRFSNGR 107          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: F0WP82_9STRA (Ethanolamine kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WP82_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.230e-12
Identity = 34/78 (43.59%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   28 PRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            P W+     DIQ+K ++GGITN ++  R    G+  LVR+YG++T++L+DR+ E  +F++LS  GF P   G FK GR
Sbjct:  146 PDWKNALKEDIQIKIVSGGITNQLY--RLIWMGKSLLVRIYGENTEILIDRKTENEIFAKLSREGFAPTYYGRFKNGR 221          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A5J4Y5B2_9CHLO (Putative ethanolamine kinase A-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5B2_9CHLO)

HSP 1 Score: 67.8 bits (164), Expect = 2.360e-11
Identity = 32/79 (40.51%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   25 LPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            LP+W +LP+ DI++ +++GGITN++ K   ++     LVRV+G  TD ++DR  E  +  +L   GFG   LG F  GR
Sbjct:   32 LPQWASLPEHDIKVTKVSGGITNMLLKMTPSSQRPPVLVRVFGDHTDEVIDRDAEETISLQLHEAGFGAEILGTFGNGR 110          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A0L0H767_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H767_SPIPD)

HSP 1 Score: 65.1 bits (157), Expect = 2.310e-10
Identity = 35/86 (40.70%), Postives = 45/86 (52.33%), Query Frame = 1
Query:    1 VLSHVREALPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGG 258
            V S +    P W      D++  Q T GITN + +  +  TGE ALVR YGK +D+L+DRR+E      LS LG  P   G F  G
Sbjct:   84 VASVIAHFFPAWNV--SRDVKFIQCTAGITNKLVRCLHQPTGESALVRCYGKGSDILIDRRQEMLNLIALSRLGLSPALYGRFHNG 167          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: D8QX93_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QX93_SELML)

HSP 1 Score: 64.3 bits (155), Expect = 3.970e-10
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1
Query:   16 REALPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGG 258
            R  +  W  L D D+ + +I+GGITN++ K  +    E   VR++G +TD ++DR++E  V   LS   FG + +G F+ G
Sbjct:   28 RALVSGWSDLGDDDLAISEISGGITNLLLKVLDKKQNEAVTVRIFGPNTDAVIDRKRELQVLPHLSESDFGAKLVGLFENG 108          
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Match: A0A7S1HVN9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1HVN9_9EUGL)

HSP 1 Score: 63.2 bits (152), Expect = 4.110e-10
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   28 PRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVYGKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR 261
            P WRT+   ++++ QI+GGITN+++K    A     LVRVYG +TD+++DR KE  +  +LS + F     G F  GR
Sbjct:   41 PEWRTVNIDEMKVDQISGGITNLLYKVSGPAVP--LLVRVYGDNTDVIIDRAKETNMLKQLSDVEFAVPFYGTFGNGR 116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7844.19108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KT30_9PHAE1.640e-4997.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1J0_ECTSI5.690e-4996.55Choline/ethanolamine kinase n=1 Tax=Ectocarpus sil... [more]
A0A6B2L936_9EUKA1.740e-1238.89Uncharacterized protein (Fragment) n=1 Tax=Arcella... [more]
A0A813IQZ4_POLGL2.090e-1246.84Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
D8LQ37_ECTSI2.100e-1238.64Choline/ethanolamine kinase n=2 Tax=Ectocarpus Tax... [more]
F0WP82_9STRA2.230e-1243.59Ethanolamine kinase putative n=1 Tax=Albugo laibac... [more]
A0A5J4Y5B2_9CHLO2.360e-1140.51Putative ethanolamine kinase A-like n=1 Tax=Trebou... [more]
A0A0L0H767_SPIPD2.310e-1040.70Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
D8QX93_SELML3.970e-1035.80Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A7S1HVN9_9EUGL4.110e-1041.03Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7844contigEcto-sp13_S_contig7844:5412..6867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score168.7
Seed ortholog evalue1.2e-39
Seed eggNOG ortholog2880.D7G1J0
Model size264
KEGG rclassRC00002,RC00017
KEGG koko:K00894
KEGG ReactionR01468
KEGG Pathwayko00564,ko01100,map00564,map01100
KEGG ModuleM00092
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0006644,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009987,GO:0016020,GO:0019637,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044464,GO:0071704,GO:0071944,GO:0090407,GO:1901576
Exons3
EggNOG free text desc.ethanolamine kinase activity
EggNOG OGsCOG0510@1,KOG4720@2759
EC2.7.1.82
Cds size264
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464055.3802307-CDS-Ecto-sp13_S_contig7844:5411..54831681464055.3802307-CDS-Ecto-sp13_S_contig7844:5411..5483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 5412..5483 +
1681464055.3953383-CDS-Ecto-sp13_S_contig7844:5982..60921681464055.3953383-CDS-Ecto-sp13_S_contig7844:5982..6092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 5983..6092 +
1681464055.4089484-CDS-Ecto-sp13_S_contig7844:6785..68671681464055.4089484-CDS-Ecto-sp13_S_contig7844:6785..6867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7844 6786..6867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7844.19108.1prot_Ecto-sp13_S_contig7844.19108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7844 5412..6867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7844.19108.1

>prot_Ecto-sp13_S_contig7844.19108.1 ID=prot_Ecto-sp13_S_contig7844.19108.1|Name=mRNA_Ecto-sp13_S_contig7844.19108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
VLSHVREALPRWRTLPDGDIQLKQITGGITNVIFKARNAATGEGALVRVY
GKDTDLLLDRRKEAAVFSELSTLGFGPRKLGEFKGGR*
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mRNA from alignment at Ecto-sp13_S_contig7844:5412..6867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7844.19108.1 ID=mRNA_Ecto-sp13_S_contig7844.19108.1|Name=mRNA_Ecto-sp13_S_contig7844.19108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7844:5412..6867+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGTCTCACGTGAGGGAGGCGTTGCCCCGGTGGAGAACCCTCCCTGA CGGCGACATCCAGCTGAAACAGGTGTGTTAATCAGCGTGCTTGCTTGCCG AGGCAATCGCTGCGCGATCCTATGTCACGTGTTTGAATCGCGTGTCTGCG CAATCCGCAGGCTTCAAGGGTAGGAGTAACCGTTAACCTACGAGTGATGC CATGGATGCACTACCAAAGGTAGATTACTCCTCAACCAAGGCCGTACGAT AACCGACCGATACGTTCGAGACAAACTCCCCGACAAGGTCTTTCAATCTG CACCCTTTTCTGCCTTGAAATATTCTTGCCTGTGGACCAATCGAGCGATG AAGGACGTTGTACATGTATACGATGACTCAAGTTTATGCTCGCGATCGCC CCCCGGCTCTGTCAGCTTCCGTCCGATTCAAATCGCCTCTGTGCAGTAGC AGCAAGAGTGGGACGACACAAGGGGTGATCTGATTTACGGTAAGGTGATA CGCCTCTACCGGTATGTGTTTTGTGTTTGTTTAGAAGTTGCTCCCGTCCG TCCTACGGTTGTGCGTTGTAGATCACCGGAGGTATCACGAATGTGATCTT CAAGGCTCGAAACGCCGCCACCGGGGAGGGAGCCCTTGTGCGCGTCTACG GCAAGGACACCGACCTGTTGCTGGATCGGCGGTGCGTCGGCCAACACCGC GAGATCCTTCCCTACTGTGGCTGTCCTTGGTCATCATTTCCGAATGTATT TTAGTCTTGCGCCTTTTCGGGCAATTTGACAACCAATCATGTTACATTTT TAATATTGAGTTTTCGTTGCGCTTGATGTATGTTTGGTCGATCTCAAGTA AGGGCTGTGGCAGTGTGGGGGTGACTCGCTACCACCAGCATTCCTGTTGG GTGGTACCTCTAGCTCTTGAAACGGTCGTTTCGACGTCATTTCGTAGATT CACCTTCGCCGTGTCACATCCGTTGACCGGCCGGATATAGTGGAGCCGAA TTTGACTCAATTATCTTTCGGGACTTTGGGTTATCAATTGGGGGCTGGGG GCGAGTCTTGGGTTGAATGAACACCTGCCATTAAGCCTTGAATGCGTAAG GTATGACCGATCTTCTGCATAATATTCTCCAACAGCTGGTTGGGTGTGTC GTCTGCTTTGTCGCCGCCGCTTTAACGCGGCGGCCGGCCATCCCTATCGT TTTACCGCGTACAACCGTCGACATGTACTTCGACGGGCCGAAATAAGCCC GGCGACGCGCATTCCGTTGAAGCATCCGAAACACCTGGCGAACCGTCTCG TGTATCGCTTCAAAAGTGTCGCAATACGTAGACGCCGTTGCTTTTTTTCG TTGTGGATGTCTCGTTTCTCGCAGAAAGGAGGCCGCGGTGTTTTCGGAGC TGTCTACCCTCGGATTCGGGCCTCGAAAGCTTGGAGAGTTCAAGGGTGGA AGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7844:5412..6867+

>mRNA_Ecto-sp13_S_contig7844.19108.1 ID=mRNA_Ecto-sp13_S_contig7844.19108.1|Name=mRNA_Ecto-sp13_S_contig7844.19108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7844:5412..6867+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGTCTCACGTGAGGGAGGCGTTGCCCCGGTGGAGAACCCTCCCTGA
CGGCGACATCCAGCTGAAACAGATCACCGGAGGTATCACGAATGTGATCT
TCAAGGCTCGAAACGCCGCCACCGGGGAGGGAGCCCTTGTGCGCGTCTAC
GGCAAGGACACCGACCTGTTGCTGGATCGGCGAAAGGAGGCCGCGGTGTT
TTCGGAGCTGTCTACCCTCGGATTCGGGCCTCGAAAGCTTGGAGAGTTCA
AGGGTGGAAGGTGA
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