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Homology
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: D8LT01_ECTSI (DNA polymerase delta subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT01_ECTSI) HSP 1 Score: 337 bits (864), Expect = 1.190e-102 Identity = 198/235 (84.26%), Postives = 204/235 (86.81%), Query Frame = 3
Query: 78 MVADAADANGGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCPQSVNIPVPKAPPPPERVHEESPFAPRGXXXXXXXXXXXXXXXXXXASSKPKGKAIAPKDFXXXXXXXXXXXKAGDGK 782
M ADAADA+GGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGR+G GG GAVEVKLVSAEGLDSTRKALETVTCVHVYSVQ APCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCP+ V++PVPKAPP XXXXXXXXXXXXXXXX ASSKPKGKAIAPKDF XX KAG+GK
Sbjct: 1 MAADAADASGGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRSGIGGFGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQPAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCPEGVDVPVPKAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNASSKPKGKAIAPKDFFAAAGXXKGKGKAGEGK 235
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A6H5KL09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL09_9PHAE) HSP 1 Score: 274 bits (701), Expect = 3.730e-80 Identity = 267/332 (80.42%), Postives = 271/332 (81.63%), Query Frame = 3
Query: 1083 KGGDTDXXXXXXASEGEGDGLEDSEEEWDDGNAAKSETPSKTNGVGVGSSXXXXXXXXXXXXXXXXGPAAAKNTKAXXXXXXXXXXXXXXXXXXXXXXXXXXASPVGDDGSDDEAGGREEAESTPGSGAATIGRGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYXXXXXXXXTSKKEPVRGAMDKFTAKDNGTGVDSNGVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPAKTNQTRTPPQGMKKAKIGVENKAEGSVETPASANGKDGXXXXXXXXXXXAPKSGGKQASMMSFFKKA 2078
+GGD D XXASEGEGDGLEDSEEEWDDG A KS+TPSKTNGVGVGSS XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXX SPVGDD SDDEA GREEAESTPGSGAAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Y XXXXXXX EPVRGAMDKFTAK NGTGVDS+GVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPAKTNQ+RTPP G KKAKIGVENKAEGSVETPA A GKDG APKSGGKQASMMSFFKKA
Sbjct: 18 QGGDKDGGVGXXASEGEGDGLEDSEEEWDDGTAEKSKTPSKTNGVGVGSSGSXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGDDSSDDEARGREEAESTPGSGAATKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAASTSAKRKGRYDXXXXXXXXXXXEPVRGAMDKFTAKGNGTGVDSSGVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPAKTNQSRTPPPGTKKAKIGVENKAEGSVETPAGAKGKDGATATKKKTAKAAPKSGGKQASMMSFFKKA 343
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: UPI001B88DBF9 (DNA polymerase delta subunit 3-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88DBF9) HSP 1 Score: 86.7 bits (213), Expect = 5.900e-14 Identity = 55/148 (37.16%), Postives = 80/148 (54.05%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK---VSATYLVVGRNGAGGSGAVEVK--LVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCP 551
YLD L+ +V DE +VVT++WL+ VL+V N AK+ML+ FC++Q + +S TY V G AG E K +VS E L+S + +L V CVH+YS+ + S L+ D + KE +ST+ A +RCP
Sbjct: 7 YLDNLDEFVNDENRVVTYKWLSRVLTVHVNEAKRMLFAFCEQQRNKDHDDISVTYFVAGSTAAGMHSPQEYKCAVVSEEQLESYKASLAVVNCVHIYSIHKSKLKD-----SNALYIADCDGFKEHALQSTQHSA---------IRCP 140
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A8B9JG61_ASTMX (DNA polymerase delta subunit 3 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9JG61_ASTMX) HSP 1 Score: 84.3 bits (207), Expect = 1.750e-13 Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFC-QRQGERK---VSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRT-HRLSGVRCPQSVNI 566
YLD ++ +V D+ K+VT++WL+L L V N AK+MLY + QR+ ER + ATYLV G+ GS +V +V + LD T+ L+ VHVYSVQ A S L++TD + KE NL+ ++ S +RC +V +
Sbjct: 5 YLDNIDEYVNDQNKIVTYKWLSLTLGVHVNTAKQMLYHYLDQRRKERSGTTLHATYLVSGKCSENGSVCHKVSVVREDQLDDTKSKLDKTISVHVYSVQKAELKD-----SGPLYSTDYDAVKE----------NLKNCNKYSTIRCAAAVPL 142
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: UPI0001CB96C3 (DNA polymerase delta subunit 3-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB96C3) HSP 1 Score: 84.3 bits (207), Expect = 1.970e-13 Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRNGAGGSGAVEVKLVSAEG--LDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGA 512
YL+ L+ +V+DE K+VT++WL+ LSV N AK+MLY + Q+Q ++ + TYLV G G G V KL G L++T+ +L+ VT VH+YS+ S L+ D + TKE + +S + GA
Sbjct: 7 YLENLQEYVVDENKIVTYKWLSKTLSVHVNQAKQMLYMYVQKQKKKDLCVTYLVGGEQ-KDGDGLVMKKLSLVRGNQLEATKCSLDKVTSVHIYSIHKCLLKD-----SNALYTVDYDITKEHLHQSNKFGA 132
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: W5K564_ASTMX (DNA polymerase delta subunit 3 n=4 Tax=Astyanax mexicanus TaxID=7994 RepID=W5K564_ASTMX) HSP 1 Score: 84.3 bits (207), Expect = 3.290e-13 Identity = 57/153 (37.25%), Postives = 84/153 (54.90%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFC-QRQGERK---VSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRT-HRLSGVRCPQSVNI 566
YLD ++ +V D+ K+VT++WL+L L V N AK+MLY + QR+ ER + ATYLV G+ GS +V +V + LD T+ L+ VHVYSVQ A S L++TD + KE NL+ ++ S +RC +V +
Sbjct: 5 YLDNIDEYVNDQNKIVTYKWLSLTLGVHVNTAKQMLYHYLDQRRKERSGTTLHATYLVSGKCSENGSVCHKVSVVREDQLDDTKSKLDKTISVHVYSVQKAELKD-----SGPLYSTDYDAVKE----------NLKNCNKYSTIRCAAAVPL 142
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A672MBU9_SINGR (DNA polymerase delta subunit 3 n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672MBU9_SINGR) HSP 1 Score: 81.3 bits (199), Expect = 4.110e-13 Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERK----VSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRT-HRLSGVRCPQSV 560
YLD ++ +V D+ K+VT++WL+L L V N AK+MLY + Q++ + ATYLV G+ GS +V +V + LD+ + ++ VHVYSVQ A S+ L+ TD E KE NL+ ++ S +RC +V
Sbjct: 6 YLDNIDEFVNDQNKIVTYKWLSLTLGVHVNTAKQMLYHYLQQKRNESSGTPLHATYLVSGKCVENGSTCHKVSVVREDKLDAVKAKMDVTISVHVYSVQRAELKD-----SSPLYNTDYEAVKE----------NLKNCNKYSAIRCAAAV 141
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A8D0BHP5_9SAUR (DNA polymerase delta subunit 3 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BHP5_9SAUR) HSP 1 Score: 84.0 bits (206), Expect = 4.110e-13 Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSA----TYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANL-RTHRLSGVRCPQSV 560
YL+ ++ +V D+ +VVT++WL+ L V N AK+MLYD+ +R+ + A TYLV G GS +V +V E L++ + L T+ CVHVYS+Q A S+ L+ TD + K ANL + + S +RC +V
Sbjct: 6 YLENIDEFVTDQNRVVTYKWLSYTLGVHVNQAKQMLYDYVERKRKENSGAQLHVTYLVAGNLVQNGSTCHKVAVVKEEKLEAMKSKLSTIACVHVYSIQKATLKD-----SSPLYNTDYDIIK----------ANLQKCSKFSAIRCAAAV 141
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A2P2I6W8_9CRUS (DNA polymerase delta subunit 3 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2I6W8_9CRUS) HSP 1 Score: 82.0 bits (201), Expect = 1.070e-12 Identity = 45/144 (31.25%), Postives = 78/144 (54.17%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFCQRQGERKVSATYLVVGRNGA-GGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTHRLSGVRCP 551
Y+D LE ++ DE +VVT++WL++ L + N AK++LY + + E + TYLV+G + G ++ + + L++ +K L+ V CVHVYS+ + D + L+ D + T+E + +TE G G+ CP
Sbjct: 95 YMDNLEEYINDENRVVTYKWLSITLQIPCNTAKRLLYHYLSTKNEDDLHITYLVMGTSTTPDGIKQAQIHVAPSLELEAVKKLLDAVECVHVYSLSKSKLK----DQTAALYTADYDCTRENLATATEYG---------GIECP 225
BLAST of mRNA_Ecto-sp13_S_contig78.19049.1 vs. uniprot
Match: A0A3B4E554_PYGNA (DNA polymerase delta subunit 3 n=2 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4E554_PYGNA) HSP 1 Score: 81.3 bits (199), Expect = 1.840e-12 Identity = 49/124 (39.52%), Postives = 73/124 (58.87%), Query Frame = 3
Query: 123 YLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKMLYDFC-QRQGERK---VSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALETVTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKE 482
YLD ++ +V D+ K+VT++WL+L L V N AK+MLY + QR+ ER + ATYLV G+ G+ +V +V + L+ T+ LE VHVYS+Q A S+ L++TD + KE
Sbjct: 5 YLDNIDEYVNDQNKIVTYKWLSLTLGVHVNIAKQMLYHYLEQRRKERSGTTLHATYLVSGKCSENGNVCHKVSVVREDQLEDTKSKLEKTISVHVYSIQKAELKD-----SSPLYSTDYDAVKE 123
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 342.0 |
| Seed ortholog evalue | 6.1e-91 |
| Seed eggNOG ortholog | 2880.D8LT01 |
| Preferred name | POLD3 |
| Model size | 3067 |
| KEGG rclass | RC02795 |
| KEGG ko | ko:K03504 |
| KEGG Reaction | R00375,R00376,R00377,R00378 |
| KEGG Pathway | ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166 |
| KEGG Module | M00262 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000228,GO:0000278,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006281,GO:0006283,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019725,GO:0019899,GO:0019985,GO:0022402,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0042575,GO:0042592,GO:0042769,GO:0043150,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051276,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070182,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234 |
| Exons | 9 |
| EggNOG free text desc. | nucleotide-excision repair, DNA gap filling |
| EggNOG OGs | 28HEU@1,2QPSW@2759 |
| Ec32 ortholog description | DNA polymerase subunit Cdc27 |
| Ec32 ortholog | Ec-08_004310.1 |
| Cds size | 2004 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko01009,ko03032,ko03400 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464050.2532685-UTR-Ecto-sp13_S_contig78:19682..20668 | 1681464050.2532685-UTR-Ecto-sp13_S_contig78:19682..20668 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig78 19683..20668 - |
| 1681464050.393432-UTR-Ecto-sp13_S_contig78:27677..27754 | 1681464050.393432-UTR-Ecto-sp13_S_contig78:27677..27754 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig78 27678..27754 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464050.27393-CDS-Ecto-sp13_S_contig78:20668..20890 | 1681464050.27393-CDS-Ecto-sp13_S_contig78:20668..20890 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 20669..20890 - |
| 1681464050.2868967-CDS-Ecto-sp13_S_contig78:21266..21429 | 1681464050.2868967-CDS-Ecto-sp13_S_contig78:21266..21429 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 21267..21429 - |
| 1681464050.2972102-CDS-Ecto-sp13_S_contig78:21879..22669 | 1681464050.2972102-CDS-Ecto-sp13_S_contig78:21879..22669 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 21880..22669 - |
| 1681464050.3065755-CDS-Ecto-sp13_S_contig78:23547..23924 | 1681464050.3065755-CDS-Ecto-sp13_S_contig78:23547..23924 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 23548..23924 - |
| 1681464050.3163161-CDS-Ecto-sp13_S_contig78:24360..24440 | 1681464050.3163161-CDS-Ecto-sp13_S_contig78:24360..24440 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 24361..24440 - |
| 1681464050.3260722-CDS-Ecto-sp13_S_contig78:24861..24987 | 1681464050.3260722-CDS-Ecto-sp13_S_contig78:24861..24987 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 24862..24987 - |
| 1681464050.3397834-CDS-Ecto-sp13_S_contig78:25452..25552 | 1681464050.3397834-CDS-Ecto-sp13_S_contig78:25452..25552 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 25453..25552 - |
| 1681464050.360436-CDS-Ecto-sp13_S_contig78:26283..26366 | 1681464050.360436-CDS-Ecto-sp13_S_contig78:26283..26366 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 26284..26366 - |
| 1681464050.3725579-CDS-Ecto-sp13_S_contig78:27614..27677 | 1681464050.3725579-CDS-Ecto-sp13_S_contig78:27614..27677 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig78 27615..27677 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig78.19049.1 >prot_Ecto-sp13_S_contig78.19049.1 ID=prot_Ecto-sp13_S_contig78.19049.1|Name=mRNA_Ecto-sp13_S_contig78.19049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=668bp
MVADAADANGGTQVQYLDELEGWVLDEQKVVTFRWLALVLSVTANAAKKM LYDFCQRQGERKVSATYLVVGRNGAGGSGAVEVKLVSAEGLDSTRKALET VTCVHVYSVQAAPCSQPAADMSTQLWATDLEHTKEMVEESTEAGANLRTH RLSGVRCPQSVNIPVPKAPPPPERVHEESPFAPRGGGAATGGAAGDGGGG PKNASSKPKGKAIAPKDFFAAAGGRKGKGKAGDGKKRATAAAQEEKQAVA AAAAATVAAADAKKKKAGGIGSFFGKASAAPIAAAKNEKEDEEGGVGAED VQPPQQQQQQPKARLSKKMVVEEDDDEEEDEVVPRKGGDTDGGAGGGASE GEGDGLEDSEEEWDDGNAAKSETPSKTNGVGVGSSGSSSISSSSKKASAA TGPAAAKNTKATAPPTAATSAAKKAKKAKKAKKDRSKASPVGDDGSDDEA GGREEAESTPGSGAATIGRGKAKKAGRGSGAKGGSGSEVGSGKSDDEEGD GEKKKRRRGKGTAVSTSAKRKGRYDSDDEEEETSKKEPVRGAMDKFTAKD NGTGVDSNGVAVKRTKTVLKSRTYFEGGYMKTVNEEVEVTDDEEEALQPA KTNQTRTPPQGMKKAKIGVENKAEGSVETPASANGKDGATATKKKTAKAA PKSGGKQASMMSFFKKA* back to topmRNA from alignment at Ecto-sp13_S_contig78:19683..27754- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig78.19049.1 ID=mRNA_Ecto-sp13_S_contig78.19049.1|Name=mRNA_Ecto-sp13_S_contig78.19049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78:19683..27754- (Ectocarpus species13 EcNAP12_S_4_19m) AGCCGCTCTTGGAAGGGCAACGGATAGCTGCCGGCCGGCCCGCTAACGAG
CTTCTTGCTGGGGTATCGTGGGCAAGCATGGTAGCGGACGCGGCGGACGC
AAACGGAGGGACCCAAGTGCAGTACCTGGATGAGCTTGAGGTGCAGTGCT
TTAAGGGTTGCAGGCAGGCCGGTGGGGGCGGGTAGGTGGTGATTGCGGCC
ACTTGCGTTCCGCTGTTGGAGTGGAAATCCATGGTCTCTCAAGTCGAAGG
CTTCCCGAGTCAAAGGCTTTTCTGCGAGGAATGCCACGAGACGATGTTGC
TCGAGACAAGGCGACAGTCCCTTGCAACAAACTTTGCCCCATATCTGGCG
CAAGCCACTCAACGAATGGGCGCCGGGGCAAATTAGTTCCACTTCAACGC
CGGGTATGCAACAGGCTAGGTTGTGGGTAGGGCTTTAGATTGCTGGATGA
TTTTGGATTGCCATCACGAGGAAAATAAGTAGACATGGACGCTAGACGAC
AGCAATTCAACACCGACGGAACCACAACGGGACCAGCACGCCTGTCGCTT
GTGATACCTTCAATTTCTTCAGAAGCAGCGCCGACCGAGCCCGTCGGATT
GTCTCTTATGTATACGATACAAGCTAACACTTCATTTAGACCGATTTTCA
AAGTCGACTACTCCACGACGAAGAGGACGCATGACTGAAACGATGCATTT
TCGGCGATCTCTCGACCAGGCGGCTTCAGCGCCGCCATTTTCGGCGCTGC
GACTCTTTCTTCTGTTGATGAATCGAGCTTTGAAAATCGCGTTATCTTGT
GGCGTGCAGGTACATGTAGCAGCGCAAGGACAGTTGTGCCGCTTTTGGTA
TGTTGTAGTTAACACAGAACAGGCAGTTTTGAACCAGGTTGGTATTTTAC
TGGTATTGTTTTGATCGCAACCATAGCGGGAGATACGCCGAAACCACGCC
CATTTTTTATATGCGCCGAAGCTTACATCCACTCCTTTAGGAGTTTGGCG
GTGTGCATGTTCGTCTTCGATGATTGTTGTCTACAGTAGTACAGCAGCAA
CAAGTGAACCTTGTTTTTTCGACGTGCTGCGGCACGGGTGCTGCCACACG
AATACTGGAGCGGAGCGGCTCAGCTGTCCAGGATCCAACTGTTCTTCAAC
CCCCCCTCCGCCGTACCTCGCCTGAGGTAGAGCACCACGTCCACTCCGCC
ATCCCCGCACGTCAACAACTTCATCAGTGCTTGCCCTTTGGGACTTACCG
ACCGGTGGTAGTTGAGCCAACCCGCAACAGCTTATCATTGATCCCCCCTC
CTTATCTCGCCTTTCCCCAACCCTACTTTCTTCTCGTCCGTTGTGTGCGC
GGTACTACCGCCCTGGCTCTCTGTCGAATGGGAGCCAGGGATGGGTTCTC
GACGAGCAAAAGGTGGTGACCTTCCGCTGGCTGGCCCTTGTGCTTTCGGT
GACGGCGAACGCGGCAAAGAAGTGAGCGTCTGTTTTCGGAGTTTTTGTCT
CGTTGTTTATCTTGAATTCTACGTATGCGGGCCGTGTTGGTGTTGTTGGT
GATGGCGTTGGTGGCGTTAGTGGTGGTGGTGGTACTGCCGCTGCTGGTTA
AGATATGCCTGTTTCTCTTTTCCCTCACAACACCTTTTTTGTTCTTGTGG
CACGTTTGCCTCGTCGGGCGACAGCATCGTTTGCTTTCGTGACAGAATGC
ACGATGCTGCTAGGGCAACGGTATGTCCAGGCCGCTGTTTGAGCGAGCGC
AAGCTTCTCAAACCGATCGCCTTTGTGCGAAACTTTTGAGCAGATGGGGC
CGGAGATGCCTGTCGTATCGGAGCGTGCCGCGAACACGGGCTAGAAATGT
AGCAAACCAAAATTCCTCGCGGTGGTTCCCGCATGAAGGTCTTCGTGTGC
ACTCCACAATTTAGGGGCATACGCCAAAGGGTTGGCTCACATCACCGCGC
ACGTACTGCTGTTTCAGCGTGCCTGGTTTTGAACCTAACATAAACCGCGC
AGGAGAAGAAGAAGCAATCCATCCTTGGAATCTTAATCCGGTGTCTTGGC
GTCGCTGTTGATCGATTTTGGGTCTCCGAGCTTGCCTCCATTAAGAGCAA
ACAATCCTGAGCTGCTGCCGTTGCTGTTTCGACGGAGTACTTCTTGTACC
TCCGCCGTTGTTGCCGTGTTTTTCATCTTGCTTCTGTTGCGCGCCCGTGC
AGGATGTTGTACGACTTCTGCCAGCGGCAAGGCGAGCGGAAGGTTTCGGC
GACTTACCTCGTCGTGGGGAGGAACGGCGCCGGCGGCTCCGGGGCCGTGG
AGGTAAGGTACTCATGTATGGGTTGTTGAGCTTCCTTTCCCCCCCAAATT
GTTCACGATGAAATGAAACCAGCGGCTCATGTATAGGTTGAACTTCCCCC
CTAAAGTTGTTCACGATGAAAATGAAACCAGCAGCTCATGTATGGGTTGA
GCTTCCCCCGCGAAGTTGTTCACGATGAAAGTGGAATCAGCGGTGGCGAC
ACAGTGGTAGCCGCGGCTTGCGTTTGGAGGTTGCTCGGCAGCATGTACTT
TGTTCTCGCGCCTCGCCTTCTGAACATGTTTGTCTCCGAGGAGGAAGTCG
GTACATGGCGATGCCAGAGCCTGTTGTAGGACGCCGATGGCGCGGAAGTG
ACCAAGACGTTGACATGGCGATGGCACTGAAACATCGATGACATTCAAAT
GACGATGGCTTTGGAAGCATAAACACGATCACCACCGACACCAATTAGCT
GCCGTGTTTCCACACAGGTGAAGCTCGTTTCGGCCGAAGGTTTGGACAGC
ACCCGGAAGGCGCTCGAAACCGTCACCTGCGTACACGTGTACAGCGTTCA
GGCCGCGCCCTGCTCTCAGCCCGCGGCCGACATGTCCACCCAGGCAAGGA
TTGGGTTGCCTACTAGACTGCTGTTGCGTTTCTTGTTTTCGTGTATTTCT
TTTTCGATCTATTGTGTCCAACAGCAGGCAGCCCTGATGTGTTTCCAATA
GCGTCGTCGACAGGTTGTCTCTGAGTGCTCTGACGTATTCTCCGGAGACG
AATAACAAATTCGGTGGTCACAGAGGGCTGATATCTCCAGGGATCGGCCC
ACACTCGGAAGATTTTTTTTTGGTGCGCTCGTGGGCGCAACGGACGGACC
TGGAGCTAGCCAAGGTATGCACGATTAAAGGACTACCGAAGCACATATTT
TCTCTATTTTTGTTTTTTGCTCTCTTTGAGTCGCATGGCCCCAACTGTCG
TTGCCCTCCGTCCCGATTCACACGCGCACGTGCACCCTCTCTCGGTTGCT
CAATGTCTTTCCAGTTGTGGGCGACGGACCTGGAGCACACGAAGGAGATG
GTTGAGGAGAGCACGGAAGCGGGGGCCAACCTGCGAACCCACAGGTGCAG
ACCACCGGCCGCTGTCTCTCTTGGCTCCGGGCGAACCGCGAGAGAAGGAG
AGGGGGAGTTCACCGAGTGAAATTTCAACTCGTTGCTTGTGGAGATGGGT
GCCGTAACAGCAATCAATGCACGCGTGTGTACCTGAGTATGCCAGCCAGC
TCGTACTTTGGTGGGTGTATGGTGCTGTTGAATCTGTATATATTTTTGTT
TGTCTTCAGTAGGCTTCTGGAAACGGCCGTCCTGACGCCGACCCTCGCAG
GCTCAAAGGTCATTTACGGGTCCGACCTCAAAAGGAAACGATTCTTGCAT
GGTTACCAAAGGACGGCAACCGATAACAACCGATTGTGTCAGAAAGAACA
AACACAATGACGCGCCATAAAGATTTCTATGCAAACAGCTCCCACCCCGC
GCGACCCAACTTTGTATGAAACATCGAAAGGTTGAGCGGAGTCCGTTGCC
CACAGAGCGTGAACATTCCCGTGCCAAAGGCCCCGCCTCCGCCCGAGCGC
GTCCACGAAGAGTCGCCCTTCGCCCCCCGCGGCGGCGGCGCGGCCACCGG
CGGGGCGGCGGGCGACGGAGGGGGGGGTCCGAAGAACGCCTCCTCCAAGC
CGAAGGGGAAGGCGATTGCTCCCAAAGACTTCTTCGCAGCGGCGGGAGGC
AGGAAGGGAAAGGGGAAAGCAGGGGATGGGAAGAAGAGAGCCACGGCGGC
GGCACAAGAGGAAAAACAGGCGGTCGCGGCGGCGGCAGCGGCGACGGTAG
CGGCCGCAGACGCCAAGAAAAAGAAGGCCGGGGGCATCGGGTCCTTCTTT
GGGAAGGGTGAGTATAGAGGCAAGATCGCGAAGAGAGAGTTGTAGGAGGA
AACTCATGGATCCTGTTTGATACCGCGGTTGTTTCGTGGACCGTGGTTGA
TGGCTTCCTCGCCGGCGTCTTGGTTCGAACGGAAGCTTCTAACCTCGCAT
TTCATTTTCGCGTCGAAGGACTTCGCCGGGCAATGTCGCGTCGTTCTCAG
ACTGAGCTCTCACTTTGACGGGTATTGCCTTGTGGTGTCCAAGTTTGCTT
GAAACACCCTGGCTTTTGGTGTGAATCTGCTTGGTCGCTCACAGCAGTGT
TCCATGCCAGTTCGACACGCTTTCTTTCTCTTGTACAACATCGAGGGCGC
CAATGCCGCCCGACACGCATTCCCTGCAAGAAACCTTTCCACAATCTCCC
TGTTGACACTAGTAGCACGGTTCCTGACGTGGAAGTGTCAAAACGCTTTG
TTGCACCCCGGGCCATGGAGCTTGTTGCGGTGCCTTGAGTAACACGTTCA
TGTCCGTGGGGGTACGGATTAATGGTGTACTCGCCTGCTCGGAAACGATG
ACGAAATGTGGGTGGTGTTCACCCCACTGTCGTACCGCTTCACGATGTTT
CTATGATTTATCTATGCCGAGGCTAGGTGGCGCCTTGGTAGGTGCGCGAT
CGATGTTCGAGTGTCAGGCACCGGTGATTCCTGATGGAGGCGTAACCACC
ATATCTTCCGTCGTCGTGATCCCAACCCCCATGTTGCTTTGGTTTTTGAG
ATGACAACGCTCTGATTTTGAATTGAGATGTCAACATCATGAACCCCACG
GAGTTTCACTTCGTTGTGCCGTGGAACCTTTGAGAGATGTTTCCGCCAAC
TCCTGCGACCTCCCGGACTGCCTACCTTCTTCCAGCTTCTGCGGCTCCTA
TTGCTGCGGCAAAGAACGAGAAGGAGGACGAGGAGGGCGGTGTCGGCGCG
GAAGATGTCCAGCCGCCGCAGCAGCAGCAGCAACAGCCCAAGGCTCGGTT
GTCAAAGAAGATGGTGGTTGAGGAGGACGACGACGAAGAGGAGGACGAGG
TGGTGCCACGTAAGGGTGGGGACACAGACGGCGGGGCAGGGGGCGGGGCG
AGCGAGGGGGAGGGCGATGGCCTCGAGGATTCCGAAGAAGAGTGGGACGA
CGGAAACGCCGCAAAATCGGAGACCCCGTCCAAGACCAACGGCGTGGGCG
TTGGCAGCAGCGGCAGCAGCAGCATCAGCAGTAGCAGCAAGAAGGCGTCC
GCGGCCACCGGGCCAGCAGCAGCGAAGAATACAAAGGCGACGGCGCCCCC
GACGGCGGCCACCAGCGCCGCCAAGAAGGCCAAGAAGGCCAAGAAGGCCA
AGAAGGACCGATCTAAAGCCTCGCCAGTCGGTGACGACGGCAGTGACGAC
GAAGCGGGAGGGAGGGAGGAGGCGGAATCCACTCCGGGGTCTGGGGCGGC
CACAATAGGCCGAGGAAAGGCCAAGAAGGCCGGGAGAGGTAGTGGTGCGA
AAGGAGGGTCCGGCAGCGAGGTGGGGAGCGGCAAGAGCGACGACGAAGAA
GGAGACGGAGAGAAGAAGAAGCGGAGGAGGGGGAAGGGGACGGCGGTGAG
CACCAGCGCCAAGCGCAAGGGGAGATACGACAGCGATGATGAAGAAGAGG
AGACCAGCAAGAAGGAACCCGTCAGGTGTTGGACAGGGACATGGTGACTG
CGTTGACGTTGTCTACGTTGACTTGTTGTGCACTATGGATTGATGCCTAT
GGTAGTGAACCACCTTCCCACATGTTCACCCGTAGCCGTCATGAACGAGG
GGATAGGTACAGGTTTCGTTTGAGGCGACCTTCAGGGACCGGTGAAGTTG
CGGATGATCTCCGTTATGCGTCTCTTGCTCACTCTCACAATCGGCCATGG
TTTTGTCCTCTGCTTGTCCCGTCTGACACCGTAACCAATTTCTCACCAGG
TTCGCGGGCAATAGCATCATACCCACTGGAGAGCGCATTCTCCCCAAGAG
GCAACAACCCCCCACTCCAACTATTCACTCCCTCACCCCCGACGTATTCC
CCGATCTGTGCTCCTGCTCGGTTTTTCCGCCACGTGCACCGCCCGCTCGA
CGCCATCAATTAATCTGCCCGTCAGAGGCGCGATGGACAAGTTCACCGCC
AAGGACAACGGGACCGGAGTTGACAGCAACGGGGTTGCCGTAAAGCGCAC
CAAGACGGTTCTGAAGAGCAGGACGTACTTCGAGGGCGGCTACATGAAGA
CCGTCAATGAGGAGGTGGAGGTCACCGACGACGAGGAGGTGCGCGCCCCG
GCCCGTTCGCCTCTTTCTCGTTGTTTTATCGATAGATTCGTGGGGATCGA
ATCTACCATCCGTGCGAAAAAAAGCACAGCAGTGGCAGGGCCGGAACTCA
CCCGGCGAACGGTTGTCGGGGTGCATCTCACCTCTTCAAGCTCGGCTTGC
TGAAAACCTGGGGACGGTTTGCGCTTATTGCCATGCCTACTGATCGGCGG
CCACTCGATAGAACTTCTCATCATTTTTCCAAATACATCCGCAAACCTCG
CGCGCGTATGCCCTGTGGCGTTTCGCTATCGTCATGTGTGCGGGTCCAAT
GCCCCCGGATATTCCGCCCCCCCCGCCGCTTTTCGTGCCGTTCTTCCACG
TTCCCCCCATCCAGGAAGCCCTGCAGCCCGCCAAGACCAACCAGACAAGA
ACGCCACCGCAAGGTATGAAAAAGGCAAAGATCGGCGTGGAAAACAAGGC
CGAGGGGTCAGTGGAAACCCCGGCAAGCGCCAACGGCAAGGATGGGGCGA
CGGCGACCAAGAAAAAGACTGCAAAGGCGGCTCCCAAATCCGGCGGGAAG
CAGGCCAGCATGATGAGCTTCTTCAAGAAGGCCTAACCCACCGGCCTATT
TGGAGCGAAGGAAGAGTCTTGCCGATAGCTCCACTGTCCAAGTTGTGTAG
ATTGATGAGTGTGAGCGCAGGGATTGACCTGTAGGTCGAAAGGTCAACGG
AAACTCGCGTGCTTCCATTATCTGGTGTTTCTTTTTTCGTGGTGCTTTTC
GGTTTAGAGTTGCCGTAGCCCGGAAGATCATGCCGTTTTACTGGGGAACT
GCCTGGTCGACTGCCAGGAAATTGCCTGGCTCGGTCTTGATCGGTCTGCC
AGGTGTTGATTCGGATTCTATACACTTCGAGCAGGGTGCGTTCTTTCTTC
AAGAAGCCGGGTTTCTCAGGGGAACTCGCCTCAAAAGCGGTTGATTCGTT
AGGTTTATGGTCGGCGTTGTGGTGAGCGCCCTCCGTCCGCTAGAATGATT
CTCTCCGTCCGCCTTCACCGGTCGATCTGTCGAGACAAACCACTTTATTT
GATTATGGAGTTCACTTGAATAGAAGGAGGGTATGCCTGGTATTTTTGTT
GCCATCGTTGCTGTCGCTGGTGTTACCGGTTGTAGTCGAGCGTTGACTTC
AGCTGGAGAAGTTCTTTACACATGTGATGTCCCATTGGACCGTGGGACGA
CCCATGGGGCCCTCCGGACGTCTGTCCATCCGTGTGTTCTCTTCCGTACT
TGCATGGAACGTGATTTTCACAGCCCAACCCATCGTGTTCCACGTGCACG
GCTGTGAAAATGACGCATATGCTGTAGTATTGCGGTACGCGCTGGCTACC
GGTTAAGTGTCAGGGAGCATGGATGGGATGCACAAGCACCAAGAAGGGAG
CACATGCCATTGCCGCGGTTGCCGTTTCGAAAAGTGCCAGGTAATCGGCG
TTAGTGCGTGCATTGGCACTCATTCGAGTTCCTTTTGAGGTGGAGTCCAC
AGGTAGGTGTCCTCACACGCGTGCGCGTCTCCTACAGTATCTCGATGCCA
CTCCCTTTTTTTTTTTCTAGGC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig78:19683..27754- >mRNA_Ecto-sp13_S_contig78.19049.1 ID=mRNA_Ecto-sp13_S_contig78.19049.1|Name=mRNA_Ecto-sp13_S_contig78.19049.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2004bp|location=Sequence derived from alignment at Ecto-sp13_S_contig78:19683..27754- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTAGCGGACGCGGCGGACGCAAACGGAGGGACCCAAGTGCAGTACCT GGATGAGCTTGAGGGATGGGTTCTCGACGAGCAAAAGGTGGTGACCTTCC GCTGGCTGGCCCTTGTGCTTTCGGTGACGGCGAACGCGGCAAAGAAGATG TTGTACGACTTCTGCCAGCGGCAAGGCGAGCGGAAGGTTTCGGCGACTTA CCTCGTCGTGGGGAGGAACGGCGCCGGCGGCTCCGGGGCCGTGGAGGTGA AGCTCGTTTCGGCCGAAGGTTTGGACAGCACCCGGAAGGCGCTCGAAACC GTCACCTGCGTACACGTGTACAGCGTTCAGGCCGCGCCCTGCTCTCAGCC CGCGGCCGACATGTCCACCCAGTTGTGGGCGACGGACCTGGAGCACACGA AGGAGATGGTTGAGGAGAGCACGGAAGCGGGGGCCAACCTGCGAACCCAC AGGTTGAGCGGAGTCCGTTGCCCACAGAGCGTGAACATTCCCGTGCCAAA GGCCCCGCCTCCGCCCGAGCGCGTCCACGAAGAGTCGCCCTTCGCCCCCC GCGGCGGCGGCGCGGCCACCGGCGGGGCGGCGGGCGACGGAGGGGGGGGT CCGAAGAACGCCTCCTCCAAGCCGAAGGGGAAGGCGATTGCTCCCAAAGA CTTCTTCGCAGCGGCGGGAGGCAGGAAGGGAAAGGGGAAAGCAGGGGATG GGAAGAAGAGAGCCACGGCGGCGGCACAAGAGGAAAAACAGGCGGTCGCG GCGGCGGCAGCGGCGACGGTAGCGGCCGCAGACGCCAAGAAAAAGAAGGC CGGGGGCATCGGGTCCTTCTTTGGGAAGGCTTCTGCGGCTCCTATTGCTG CGGCAAAGAACGAGAAGGAGGACGAGGAGGGCGGTGTCGGCGCGGAAGAT GTCCAGCCGCCGCAGCAGCAGCAGCAACAGCCCAAGGCTCGGTTGTCAAA GAAGATGGTGGTTGAGGAGGACGACGACGAAGAGGAGGACGAGGTGGTGC CACGTAAGGGTGGGGACACAGACGGCGGGGCAGGGGGCGGGGCGAGCGAG GGGGAGGGCGATGGCCTCGAGGATTCCGAAGAAGAGTGGGACGACGGAAA CGCCGCAAAATCGGAGACCCCGTCCAAGACCAACGGCGTGGGCGTTGGCA GCAGCGGCAGCAGCAGCATCAGCAGTAGCAGCAAGAAGGCGTCCGCGGCC ACCGGGCCAGCAGCAGCGAAGAATACAAAGGCGACGGCGCCCCCGACGGC GGCCACCAGCGCCGCCAAGAAGGCCAAGAAGGCCAAGAAGGCCAAGAAGG ACCGATCTAAAGCCTCGCCAGTCGGTGACGACGGCAGTGACGACGAAGCG GGAGGGAGGGAGGAGGCGGAATCCACTCCGGGGTCTGGGGCGGCCACAAT AGGCCGAGGAAAGGCCAAGAAGGCCGGGAGAGGTAGTGGTGCGAAAGGAG GGTCCGGCAGCGAGGTGGGGAGCGGCAAGAGCGACGACGAAGAAGGAGAC GGAGAGAAGAAGAAGCGGAGGAGGGGGAAGGGGACGGCGGTGAGCACCAG CGCCAAGCGCAAGGGGAGATACGACAGCGATGATGAAGAAGAGGAGACCA GCAAGAAGGAACCCGTCAGAGGCGCGATGGACAAGTTCACCGCCAAGGAC AACGGGACCGGAGTTGACAGCAACGGGGTTGCCGTAAAGCGCACCAAGAC GGTTCTGAAGAGCAGGACGTACTTCGAGGGCGGCTACATGAAGACCGTCA ATGAGGAGGTGGAGGTCACCGACGACGAGGAGGAAGCCCTGCAGCCCGCC AAGACCAACCAGACAAGAACGCCACCGCAAGGTATGAAAAAGGCAAAGAT CGGCGTGGAAAACAAGGCCGAGGGGTCAGTGGAAACCCCGGCAAGCGCCA ACGGCAAGGATGGGGCGACGGCGACCAAGAAAAAGACTGCAAAGGCGGCT CCCAAATCCGGCGGGAAGCAGGCCAGCATGATGAGCTTCTTCAAGAAGGC CTAA back to top
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