mRNA_Ecto-sp13_S_contig7792.19039.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7792.19039.1
Unique NamemRNA_Ecto-sp13_S_contig7792.19039.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: D7FJQ3_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ3_ECTSI)

HSP 1 Score: 578 bits (1489), Expect = 1.240e-202
Identity = 289/303 (95.38%), Postives = 291/303 (96.04%), Query Frame = 1
Query:    1 MCTGECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVFPVVETGAEGGAAGQQDVXXXXXXXXXXESFKADWLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQLKKR 909
            MCTGECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAEL+KARERIRGIQAELREVTRRLTEMNPGG+RWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQ GEKFTSWKDVFPVVETGAEGGAAGQQDV          ESFKADWLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAE GSLGGGRRSRALARRSKRYAALGLGGDHVAQMQLKKR
Sbjct:    1 MCTGECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKARERIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQ-GEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSDEDDDESFKADWLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAEEGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQLKKR 302          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A6H5KZT3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT3_9PHAE)

HSP 1 Score: 524 bits (1350), Expect = 2.590e-179
Identity = 280/350 (80.00%), Postives = 286/350 (81.71%), Query Frame = 1
Query:   25 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVFPVVETGAEGGAAGQQDVXXXXXXXXXX-------------------------------------------------------ESFKADWLSDAESVGSDEVSKLYSEAGDLACSGETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQLKKR 909
            KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAEL+KARE+IRGIQAELREVTRRLTEMNPGG+RWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQ GEKFTSWKDVFPVVETGAEGGAAGQQDV     XXXXX                                                        + +ADWLSDAESVGSDEVSKLYSEAGDLACS ETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQL+KR
Sbjct:  144 KRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELEKAREKIRGIQAELREVTRRLTEMNPGGLRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQ-GEKFTSWKDVFPVVETGAEGGAAGQQDVLPTDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNNSEADWLSDAESVGSDEVSKLYSEAGDLACSAETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQLEKR 492          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A7S2SRQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRQ9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 9.990e-39
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 1
Query:   91 LLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPE-VFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVF 576
            LL K+RR  H+LQ Y+ +GW+S+ + K+KPT+EL KAR+ +   + E+R +  +++E NPG  +W  +Q D E  I+V+E+ C+ C   +S + +DIL+CD  GCFRAYHQ CL P +  E V   +E DWFC QC+ L  C  ++  E   G+  TSW +VF
Sbjct:  115 LLGKIRRLMHYLQTYEAEGWRSASQAKIKPTSELQKARDDVYAAKHEIRSILTQISEANPGNKKWSCMQGDAEEGIDVEEVGCSICLSLESTEDNDILMCDGEGCFRAYHQRCLQPAVTSEDVAGGDEVDWFCPQCDSLRHCLYLVSVEDVGGKPPTSWAEVF 277          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A7S1J7G6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J7G6_9EUGL)

HSP 1 Score: 124 bits (311), Expect = 5.640e-29
Identity = 65/183 (35.52%), Postives = 102/183 (55.74%), Query Frame = 1
Query:   52 ENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKF--TSWKDVFPVVETG 594
            E+ W+ +  + +  +  +RR+ H L  Y  +G +S+ REKLKP  E+ KA++RI   +  +R++  +L  MN     W     +GE  +   ++ C+ CG  + D  +DIL CD  GC RAYHQ CL P +  E   EEEE W+C QC C+ +C+E +  +F+   ++  T W  V P+ E G
Sbjct:   34 ESVWNGVLRQVRRQVAIVRREQHLLDTYSHEGTRSANREKLKPVQEMQKAQDRIARARQSIRDILAQLAGMNAEHACWLV---EGE-RMHPKDVSCSACGGAECDSENDILCCDAEGCCRAYHQLCLKPHVTTEEHAEEEE-WWCHQCNCMQECYEEINEQFETQYEYPQTPWDQVLPLEEEG 211          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: L1JX63_GUITC (PHD-type domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JX63_GUITC)

HSP 1 Score: 120 bits (302), Expect = 5.340e-28
Identity = 68/181 (37.57%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   67 RIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRL----TEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVFPVVETGA 597
            RIR + K  L   R     L  Y+QDGW  S   KLKPT EL K+ E +   + E++E+ +++     E+     R    + + EG +  ++I+C+ CG GD+   +DILLCDY+ C RA+HQ C  P +     P ++EDWFC  C C TDC E +   F  G  +T+W+ +FP +E  A
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF--GTHYTTWEKMFPELEENA 309          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: C1EG75_MICCC (Uncharacterized protein n=3 Tax=Micromonas TaxID=38832 RepID=C1EG75_MICCC)

HSP 1 Score: 122 bits (305), Expect = 1.050e-27
Identity = 60/164 (36.59%), Postives = 99/164 (60.37%), Query Frame = 1
Query:   94 LHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEF--QQGEKFTSWKDVFP 579
            L  +RR+ H +  Y+ DGWK + REKL+P  E+ K++ +I   + ++R++ R + +M+ G V +    E+  G ++V++++C +C  GD+ D +DIL+CD   C RA+HQ C+ PP+K +  P+E   W C  C+   DCF  L  +F  +      SW+DVFP
Sbjct:   81 LSTIRREQHHIDAYEMDGWKGASREKLRPADEIRKSQVKIFNCKLKVRDMFRDI-DMDTGEVSFRDRIEEDTGEVDVEDVVCARCADGDATDENDILICD-GYCDRAFHQRCVVPPVKADEIPDE---WLCPLCDARVDCFYTLNADFDLELDAADASWRDVFP 239          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A7S4NP67_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NP67_GUITH)

HSP 1 Score: 120 bits (302), Expect = 2.590e-27
Identity = 68/181 (37.57%), Postives = 100/181 (55.25%), Query Frame = 1
Query:   67 RIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRL----TEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVFPVVETGA 597
            RIR + K  L   R     L  Y+QDGW  S   KLKPT EL K+ E +   + E++E+ +++     E+     R    + + EG +  ++I+C+ CG GD+   +DILLCDY+ C RA+HQ C  P +     P ++EDWFC  C C TDC E +   F  G  +T+W+ +FP +E  A
Sbjct:  134 RIRNRIKTRLTNARYFQTMLDAYEQDGWGPSSHRKLKPTEELKKSSESLIHAKKEIKELLKQMDPASNELAQKETRIDEREYEAEG-LAFEKIVCSICGTGDARRGNDILLCDYSECNRAFHQKCHHPQVTE--LPHDDEDWFCTHCLCYTDCIEAVNELF--GTHYTTWEKMFPELEENA 309          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A7S1G4N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4N2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.730e-26
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query:   58 RWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQED-------GEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEED-WFCWQCECLTDCFE 519
            ++ + R +    L K+R     +  Y  +GW+ + RE +KP +E+ KAR+ +R  +  LR +   L   N  G    A+  D       G   + ++++ C++CGQ D+DD +DILLCD+AGC RAYHQ C+ PP   E  P+EE D WFC +C C   C E
Sbjct:   19 KFQQYRKRVAATLSKVRYLKTLMDAYASNGWQDAKRESVKPKSEISKARQSLRAAKRLLRTILTAL--WNEDGADRAAVTTDLLRADAAGRELVLMEDMPCSRCGQVDADDDNDILLCDHAGCNRAYHQLCMDPPFPTECIPQEELDPWFCNRCRCFLMCLE 178          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: A0A7R9THL8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9THL8_MICPS)

HSP 1 Score: 113 bits (283), Expect = 1.780e-25
Identity = 65/191 (34.03%), Postives = 102/191 (53.40%), Query Frame = 1
Query:   19 SRKRSRNAS-DGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQ---QGEKFTSWKDVFP 579
            +RK  + A+ D  + + R R K    L  +R+    +  Y  DGW+ + REKL+P  E+ KA+ +I   +  +RE+ + +     G     AI ++ +G ++ +++ C  CG G+S D +DILLCD   C R +HQ C  PP++ E  PE +E W C  C+   DCF  L  +F+      K T + DVFP
Sbjct:   78 ARKNGKRANVDDVSEYKRTRGKIHSQLSAIRQLNAMIDAYDMDGWRGASREKLRPAEEIRKAKIKIFNAKLRVRELFKHIDLAMDGARDLHAITDE-DGELDAEDVFCCACGDGESTDDNDILLCD-GFCDRGFHQRCCVPPVRTEDIPEGDEGWLCALCDARVDCFYTLNADFELELDAGKAT-FADVFP 265          
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Match: UPI000C1CE8F2 (pathogenesis-related homeodomain protein-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE8F2)

HSP 1 Score: 115 bits (288), Expect = 5.310e-25
Identity = 66/189 (34.92%), Postives = 101/189 (53.44%), Query Frame = 1
Query:   22 RKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGWKSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQEDGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKPEVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFT---SWKDVFP 579
            RKR        N + R R   + L+H++R + + +  Y  +GWK    EKLKP  EL +A+  I   +  +RE+ + L +++    +  A   D  G I+ ++I C+KCG  D    +DI+LCD A C R +HQ CL PP+  +  P ++E W C  C+C  DC   L N+FQ G   +   SW+ +FP
Sbjct:  303 RKRKEMNKGPVNEFSRTRTHLRYLMHRIRYEQNLIDAYSAEGWKRQSLEKLKPEKELQRAKSHILDYKLRIRELFQGL-DLSLAVGKLPASLFDSAGEIDSEDIFCSKCGSKDITTGNDIILCDGA-CERGFHQFCLEPPLLKQDIPPDDESWLCPGCDCKVDCIGYL-NDFQ-GTNLSVIDSWEKIFP 487          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7792.19039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FJQ3_ECTSI1.240e-20295.38PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZT3_9PHAE2.590e-17980.00PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2SRQ9_9STRA9.990e-3943.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1J7G6_9EUGL5.640e-2935.52Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
L1JX63_GUITC5.340e-2837.57PHD-type domain-containing protein n=1 Tax=Guillar... [more]
C1EG75_MICCC1.050e-2736.59Uncharacterized protein n=3 Tax=Micromonas TaxID=3... [more]
A0A7S4NP67_GUITH2.590e-2737.57Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S1G4N2_9STRA5.730e-2637.04Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7R9THL8_MICPS1.780e-2534.03Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
UPI000C1CE8F25.310e-2534.92pathogenesis-related homeodomain protein-like n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7792contigEcto-sp13_S_contig7792:2638..6982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score585.9
Seed ortholog evalue1.1e-164
Seed eggNOG ortholog2880.D7FJQ3
Model size912
KEGG koko:K11657,ko:K12599
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009719,GO:0009725,GO:0009733,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009937,GO:0009939,GO:0009966,GO:0009967,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0010647,GO:0019219,GO:0019222,GO:0023051,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044424,GO:0044464,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065007,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2001141
Exons8
EggNOG free text desc.sequence-specific DNA binding
EggNOG OGsKOG4299@1,KOG4299@2759
Ec32 ortholog descriptionPHD-type zinc finger and AT hook protein
Ec32 orthologEc-06_010620.1
Cds size912
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7792.19039.1prot_Ecto-sp13_S_contig7792.19039.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7792 2638..6982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.3909607-CDS-Ecto-sp13_S_contig7792:2637..26601681464049.3909607-CDS-Ecto-sp13_S_contig7792:2637..2660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 2638..2660 +
1681464049.4027562-CDS-Ecto-sp13_S_contig7792:3158..32641681464049.4027562-CDS-Ecto-sp13_S_contig7792:3158..3264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 3159..3264 +
1681464049.412184-CDS-Ecto-sp13_S_contig7792:3678..37471681464049.412184-CDS-Ecto-sp13_S_contig7792:3678..3747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 3679..3747 +
1681464049.4215684-CDS-Ecto-sp13_S_contig7792:4376..45221681464049.4215684-CDS-Ecto-sp13_S_contig7792:4376..4522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 4377..4522 +
1681464049.4338007-CDS-Ecto-sp13_S_contig7792:5215..54111681464049.4338007-CDS-Ecto-sp13_S_contig7792:5215..5411Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 5216..5411 +
1681464049.443101-CDS-Ecto-sp13_S_contig7792:5815..59441681464049.443101-CDS-Ecto-sp13_S_contig7792:5815..5944Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 5816..5944 +
1681464049.4523914-CDS-Ecto-sp13_S_contig7792:6300..64081681464049.4523914-CDS-Ecto-sp13_S_contig7792:6300..6408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 6301..6408 +
1681464049.4615688-CDS-Ecto-sp13_S_contig7792:6847..69821681464049.4615688-CDS-Ecto-sp13_S_contig7792:6847..6982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7792 6848..6982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7792.19039.1

>prot_Ecto-sp13_S_contig7792.19039.1 ID=prot_Ecto-sp13_S_contig7792.19039.1|Name=mRNA_Ecto-sp13_S_contig7792.19039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MCTGECSRKRSRNASDGENRWDRIRAKFKLLLHKMRRDTHFLQVYQQDGW
KSSGREKLKPTAELDKARERIRGIQAELREVTRRLTEMNPGGVRWGAIQE
DGEGNIEVDEIMCTKCGQGDSDDHDDILLCDYAGCFRAYHQNCLSPPIKP
EVFPEEEEDWFCWQCECLTDCFEMLENEFQQGEKFTSWKDVFPVVETGAE
GGAAGQQDVLLTDSDDDDDESFKADWLSDAESVGSDEVSKLYSEAGDLAC
SGETDDGDVGSTAAEGGSLGGGRRSRALARRSKRYAALGLGGDHVAQMQL
KKR*
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mRNA from alignment at Ecto-sp13_S_contig7792:2638..6982+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7792.19039.1 ID=mRNA_Ecto-sp13_S_contig7792.19039.1|Name=mRNA_Ecto-sp13_S_contig7792.19039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7792:2638..6982+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCACAGGCGAGTGTTCAAGGTTTTTGTGGTCTAGCGCATAGATTTC GTATGCGCCGATGGTACGGCACGGAAATCTTTCACGTAATTTGGTAGATA ATACCCGTGGTGCTGTACTTCGCTCCCGCTGCTGAGTTGGGAGCTTTCTT TTTTTGTCTTCACTGCAAATCAGCGCTCACAGCACTGGTGCCGTGTTCAC CAACCCGTGGTCACACAGATGAGCTCCTCTCTACCCTCCCCTCCTGCGGA AAATTGCCTTCTTTTCTCTCGCTTCCGCTCCTGGTCTAGTGGATAGCACT AGTTTTGTGTGTACACAGAGGGACGAGTGAGCTCGCCTACGCCAGGATGC GAACCCCTGACCTGACCTCTAGAACGTTTCGAGGATACCAACTAAACCAC CGGGGCGACCGGGGCTTGTGAGGGAGGAACTGATTATCCCCGCCCGCTCG TGGCCAAACAACCAGAACCCCTTCCCGAACAAAGTATTTTTCGTGTTCGA TGACCCATGTCGCACCTACAGGAAGCGTTCTCGAAACGCCAGTGATGGGG AAAACCGATGGGACAGGATCCGCGCCAAGTTCAAGCTTTTGCTGCACAAG ATGCGGAGAGACACCCACTTCCTCCAGGTGACGACTGCGGGAAGAGACAA CTACAGTATTGGTATTTGTAGGAGCGATTCTGCACCAGTGGTGGGAAATG GTGGGAGGAGGAATGATTTATTCTTGTATTTGGCAATCTCGAAAAGCTAC ATCAACCCGTACCTCAGCCCGAAAGTTTGCATGGTTTCCCATGACTTGTG GTGGTGGTAGTGGTGGTGGTGGGATGTTGTTGTGGCGGTTGTTGCTGTTG TTGTTGTTGTTGTCCTGTATTAAAAGGAGCACGACTACTCTGAGGAAGGA GGGTAGGTAGTGTCGGTCCGTCGCTCCCCGTTCCCCACGCCAGCACCCCA CAAGAGCTACGCCTAACGCTACGGTAACTCGCATTCTGGCGACACGTCTA ACTTTGACGTTGTTGGGGCCACTTTTTGCCGGTCACAACAGGTATACCAG CAGGATGGGTGGAAGAGCAGCGGCAGGGAGAAGCTGAAACCTACAGCCGA ACTCGACAAGGTGGGTGTGGCGCCATTTCTACGGCTGCGGGTTTGTAGCT CTCTTGCTTTGGTCTATAGTCTACAACAGCAGCCCTACTCGCTTTTGCTC TCTCCACCCCCTCCCCGGCCTTTCTGTGTCATGGTGTGTTTATTCCCTTC AAATATTGTACAACCTCTCGTAATGCGAAGTGTGTCTGCTGGTGTGTGCT TGGCTGCGTTACTCATTGAAAAAATGCCACCGCCGAAAAAATAAGCATGG GGGGCTCTACATGATTTACTAGGCAAGGCGGAAGATCTGCTCGCCTGCGG TTCGCGACATCCCGGTGCCTCGGGAAGCATGCTTCGTTAGGTTTTGACTG TACGCGCGTTTGGGTGTTGTTTCAGATCCGAGCGCTTTCTTTCTACCAGT CATGTTGTTGCTGCTGGATTTTTGCCGCCGATATTGGTCGCACGATATTT TCCTCCATGAGTTGAGTCGCGACTATCTACACATGTCTCGGACAAATACG TAGAACCTGAACAGTTCGCGGTATGCTCGTGCGAAGTGTCAAGTGGTTCA AGGCTTACACGCTCGCGTGGATGCTGGTAGCCTGGTGATAGTTGTTTGTT TTTCACCCAGCTCGATGCTGTGTTTGGCTTGTCATTCAGGCTAGAGAGAG AATTCGGGGGATACAAGCGGAGCTGCGAGAAGTAACCCGGCGCCTCACCG AGATGAACCCCGGTGGTGTGCGATGGGGAGCGATACAGGAAGACGGAGAG GGCAACATCGAGGTCGACGAGATCATGTGTACCAAGTGAGCTTCGTTCGT GCGCGTTTCCCGTATGGTGGTGCTTGGATAGACTCGCAGTGAGCCGTCGT TTCGCCGGGCAACATGCTGCGTACCTCCTACTCTTGCGTGTTCCTGTTTT CCCCGTTGCGGGAACAACTACGTTGAAGTCTCAATAACCGTGCACCTGCC ATGGCGTGCGCCATGTTCTCACGCACAACCGATTCGAGGAGCGCCATATC CCCGAGCTTTTATCCAGCAGGAGTTTTTCCTATACAGCACACCGACAATT ATCAGTTGCGATGCCAAACATTTCTCCAGTTCAAGACAAGATCAAGGACC TTATCCTTAGACTGCTTGCACACATGGGACGTGGCTGTTCTGAGGTGTCA TTCTAGTTTTCATGACAAGTCGGGGTCTGTGCCGTGAGCACCGGCAGCGG CTAAGGTCGTGAACCAAGATGGACTCAAGCAAACAAGCGAACTTCAGAGG GATTCCAGATAATCGGATGGTACCCTCTTTCTTACGGCTACTTTTGGGTC GATTTTCCCACCTGGAGCAATTATGAGCACGTTGCTATGCGTACCATCAA ATTGACTACACGCCAAACGGCGCACAAAGTTGCAGAACCCTGATTGACCC GATCCGCTAATGCCTGGGCCCCGTTCGTTACTTTTCTACCCTTGCACCAC CCCCCGCGGCGTGCTGGACCCCTGGCAGGTGCGGCCAAGGAGACTCGGAT GACCATGACGACATCTTGCTTTGTGACTACGCTGGGTGCTTCAGGGCGTA CCACCAGAACTGTCTATCGCCTCCCATCAAGCCCGAAGTGTTTCCCGAGG AGGAAGAGGACTGGTTTTGCTGGCAGTGCGAGTGTCTCACGGATTGCTTC GAGATGCTTGAGAACGAGTTCCAGGTAATGAGTTTTCAGTCTCGCGTTTA CTTCCGCCAAACACGGTGGACGTCCTGGATTCACCTTTTACTTGTGAGAG TCGGGATAGAATGGTCAGAGTTGGCGAGTCCCGTGCGTGTCGTGCGCGTA CTGTGATACCGTAGCTGGCGCCAGCATACGGCCGGAATTTCTCGCCGGTT GACGGGAGATGGTGGAGTAAGAGAAGACACCGGGTGGGTTATCGAAAACG ATGTCTAGTCCCGAAAAGGATGCCAAGGCAACTCTTGACTTTCTGCCTTT TTCGCGAGGTGACTGTGCGTGCTCCCCGCTACGGTTTACTTATCATGACA CCTGCCCACCCTTGCTTCCTCGCTCCCTTTTTTCTCTCATGTACACTTGC TTCTCTACCGGGCCCAACGTATGTTGAGCAGGGGGAAAAGTTCACATCAT GGAAAGATGTTTTCCCGGTGGTGGAAACCGGGGCGGAAGGCGGTGCAGCC GGTCAACAAGACGTTCTGCTGACCGATTCAGACGATGACGACGATGAGAG CTTCAAGGTAAGCTCGATTGTAGATTACCTCTTCACGACGTGCTTGGGGT GCAGGCGGAGGGAACTGGCCAGTTCGTAAAGCTTTGCGTCCCAGACCACT TATACTGTTTGTGGTTCAGTTGACATATGCGACGGCGTCATCGTCTCTCC CCTCGTTTAGTGACTTCATGATCGTACCTCCCCTATCACCATACACAGGG AAGCGGCAGCGAGAGCGAGGATGACACCGCCGTAGGCAAGCGAAGGCGAA GAAAAGTAAGCCGCAGCGATAACAGCGGTAGTGACAGCGGTAGGGGTAGC GATGATGACGATAAAAACAGCGGCGACAGTGACAGCGACGGCGACGGCGA CAAAAACAGCGAGGCAGATTGGCTGAGCGACGCAGAGAGCGTGGGTTCCG ACGAGGTATCCAAGCTCTACAGCGAAGCGGGAGACCTGGCTTGCTCTGGC GAAACCGACGACGGCGATGTGGTGAGTTTTTTTTTGCTTGGTTGTTTCAG CAGTAGCTCTTGGTATTCCGTTTCAGCAGCAGTTCTTGGTAGTGTCAATA GTCACATGCCGGTCTTGTGCATCTCAAAATAGATGAGTACGTAAAAGTTC CCTTTCCATGTTCCTCTGATGATCCTTGGTTTCTGGCCAATGTTACGCGG TAGTTTCCTGTTGTGCGTGTATACAGCGGCGTGGTGGATCGATGATTTGT CCGTCCGGTTTCGTCTGCAGTAGCTGCCGTTTTCACGTGATGCGTTGATA GTTTGCAGTAGTGCAACACCTGCCAACGACTTGACGTGTGCATGTGCACG ATACGTTCCACTATTGACCCGTTTGCTGATGGTTTTTGGGGTAGAGGGCG CCCTAGAAGAGAACCTGGCTTCATCGTGTTTCGGCCCTTCGGTGTTTTTT TTGCCAAAAGGGATCAACGGCAGCAGAGGGAGGGTCCTTGGGCGGAGGGA GGCGTAGTCGGGCACTTGCGAGACGGAGCAAACGATATGCGGCGCTCGGT TTGGGGGGCGATCACGTCGCTCAGATGCAGCTTAAGAAGCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7792:2638..6982+

>mRNA_Ecto-sp13_S_contig7792.19039.1 ID=mRNA_Ecto-sp13_S_contig7792.19039.1|Name=mRNA_Ecto-sp13_S_contig7792.19039.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7792:2638..6982+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGCACAGGCGAGTGTTCAAGGAAGCGTTCTCGAAACGCCAGTGATGG
GGAAAACCGATGGGACAGGATCCGCGCCAAGTTCAAGCTTTTGCTGCACA
AGATGCGGAGAGACACCCACTTCCTCCAGGTATACCAGCAGGATGGGTGG
AAGAGCAGCGGCAGGGAGAAGCTGAAACCTACAGCCGAACTCGACAAGGC
TAGAGAGAGAATTCGGGGGATACAAGCGGAGCTGCGAGAAGTAACCCGGC
GCCTCACCGAGATGAACCCCGGTGGTGTGCGATGGGGAGCGATACAGGAA
GACGGAGAGGGCAACATCGAGGTCGACGAGATCATGTGTACCAAGTGCGG
CCAAGGAGACTCGGATGACCATGACGACATCTTGCTTTGTGACTACGCTG
GGTGCTTCAGGGCGTACCACCAGAACTGTCTATCGCCTCCCATCAAGCCC
GAAGTGTTTCCCGAGGAGGAAGAGGACTGGTTTTGCTGGCAGTGCGAGTG
TCTCACGGATTGCTTCGAGATGCTTGAGAACGAGTTCCAGCAGGGGGAAA
AGTTCACATCATGGAAAGATGTTTTCCCGGTGGTGGAAACCGGGGCGGAA
GGCGGTGCAGCCGGTCAACAAGACGTTCTGCTGACCGATTCAGACGATGA
CGACGATGAGAGCTTCAAGGCAGATTGGCTGAGCGACGCAGAGAGCGTGG
GTTCCGACGAGGTATCCAAGCTCTACAGCGAAGCGGGAGACCTGGCTTGC
TCTGGCGAAACCGACGACGGCGATGTGGGATCAACGGCAGCAGAGGGAGG
GTCCTTGGGCGGAGGGAGGCGTAGTCGGGCACTTGCGAGACGGAGCAAAC
GATATGCGGCGCTCGGTTTGGGGGGCGATCACGTCGCTCAGATGCAGCTT
AAGAAGCGGTAA
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