mRNA_Ecto-sp13_S_contig7787.19035.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7787.19035.1
Unique NamemRNA_Ecto-sp13_S_contig7787.19035.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: D7G484_ECTSI (Lysophospholipase l2 pldb, hydrolase of alpha/beta superfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G484_ECTSI)

HSP 1 Score: 442 bits (1138), Expect = 8.910e-153
Identity = 222/237 (93.67%), Postives = 225/237 (94.94%), Query Frame = 1
Query:   25 SDFDHYVQDLVRFSKVILPATVRPRDASGGTRTGGQGTAGSGDPPVVAGEPLGSDETLHALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIR 735
            +DFDHYVQDL RFSKVILPATVRPRDASGGTRTGGQGTAGSGD PVV GEPLG D    ALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAP TGKLPNGVVGAL WVVTKLGRQGHRSPIRRPARA+MEWSRVTHDKERLRLWETLRG VGCVLQRGPSFAWLSKSV+ASKRARGRLHQLSVPVLVLEAGLDHLVR DGIARFRRKVPGAGYRLFHGAYHDLFDETDDIR
Sbjct:  153 TDFDHYVQDLERFSKVILPATVRPRDASGGTRTGGQGTAGSGDSPVVNGEPLGCDAPFPALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPNTGKLPNGVVGALTWVVTKLGRQGHRSPIRRPARATMEWSRVTHDKERLRLWETLRGTVGCVLQRGPSFAWLSKSVLASKRARGRLHQLSVPVLVLEAGLDHLVRSDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIR 389          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A6H5KMI3_9PHAE (Hydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMI3_9PHAE)

HSP 1 Score: 344 bits (883), Expect = 4.200e-117
Identity = 178/191 (93.19%), Postives = 179/191 (93.72%), Query Frame = 1
Query:   19 MFSDFDHYVQDLVRFSKVILPATVRPRDASGGTRTGGQGTAGSGDPPVVAGEPLGSDETLHALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 591
            MFSDFDHYVQDLVRFSKVILPATVRPRDASGGT T       SGDPPVV GE LGSD TL ALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRG+VGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV
Sbjct:    1 MFSDFDHYVQDLVRFSKVILPATVRPRDASGGTGTXXXXXXXSGDPPVVNGELLGSDGTLPALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGIVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSV 191          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A838L938_9SPHN (Alpha/beta hydrolase n=1 Tax=Sphingomonas chungangi TaxID=2683589 RepID=A0A838L938_9SPHN)

HSP 1 Score: 102 bits (254), Expect = 1.360e-21
Identity = 65/186 (34.95%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKR--ARGRLHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL 768
            +VAHSMGG +A+ A        D LVL APMLA  TG +P  V  A+     KL R GHR+  R        + R+T  K R    +  +  +  +    P++ W+  ++   +R   +G L  +  PVL+L AGLD LVR + IA   +++P A  +LF    H+L  E D+ RL  L     FL
Sbjct:  125 LVAHSMGGHVALRACAERGLTVDALVLVAPMLALNTGYIPRIVASAVVGSA-KLARLGHRAIFRDNYSNPRRYLRLTASKPRYEDSQYWKRAIPGIAMGPPTWNWIGAALAGDRRIAGKGELEGVRTPVLLLAAGLDKLVRDEAIAAAAKRLPDAELKLFPTGRHELLREADENRLPALAAIDDFL 309          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A318AXB5_9NOSO (Alpha/beta hydrolase n=1 Tax=Nostoc sp. 3335mG TaxID=2204170 RepID=A0A318AXB5_9NOSO)

HSP 1 Score: 101 bits (252), Expect = 2.600e-21
Identity = 65/186 (34.95%), Postives = 93/186 (50.00%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKR--ARGRLHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL 768
            +VAHSMGG +A+ A       FD LVL APMLA  TG +P  V  A+     KL R GHR+  R        + R+T    R    +  +  +  +    P++ W+  ++   +R   +G L  +  PVL+L AGLD LVR D I+   +++P A  +LF    H+L  E D+ RL  L     FL
Sbjct:  126 LVAHSMGGHVALRACAERGLTFDALVLVAPMLALNTGYIPRIVASAVVEGA-KLARLGHRAIFRDNYSNPRRYLRLTASLPRYEDSQYWKQAIPGIAMGPPTWNWIGAALAGDRRIAGKGELEGVRTPVLLLAAGLDKLVRDDAISAAAQRLPDAEMKLFPTGRHELLREADENRLPALAAIDDFL 310          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A4Q8UKR6_9ALTE (Alpha/beta fold hydrolase n=1 Tax=Alteromonas sp. KUL49 TaxID=2480798 RepID=A0A4Q8UKR6_9ALTE)

HSP 1 Score: 94.4 bits (233), Expect = 1.300e-18
Identity = 63/189 (33.33%), Postives = 93/189 (49.21%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWV---VTKLGRQGHRSPIRRPARASMEWS--RVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL 768
            +V HSMGG I     LREPELF   VLAAPM       LP+ +  +L  V   V +L R+       +    S+ ++  ++TH + R RL+  L      +   G +  WLS +  A    R R  ++S+P+LVL A  DH++           +P A   +   AYH+LF E D++R+K L +   FL
Sbjct:  132 LVCHSMGGAIGTLTLLREPELFSKAVLAAPMYGIKPA-LPDWLASSLLQVGLGVNRLRRRDSGYFFGQTGYVSLPFTLNKLTHSQSRYRLFRALYDEEKALQLGGVTTEWLSAAKTAMDLIRQRAQEISLPMLVLSADRDHIIDNKRQREVVATIPNASLEIIPDAYHELFIERDELRIKSLTKVLDFL 319          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A2E6H695_9PROT (Hydrolase_4 domain-containing protein n=1 Tax=Halobacteriovorax sp. TaxID=2020862 RepID=A0A2E6H695_9PROT)

HSP 1 Score: 94.0 bits (232), Expect = 1.710e-18
Identity = 58/185 (31.35%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGR-QGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL 768
            ++AHSMG ++ +  A R P+ +DGL+L +PML   T   P+ VV  L  V+ ++G   G         +   E + VTH   R RL   +     C+    PS  W+ +    S++A    H L +P+L+ +AG D  V  +    F   +       F  AYH++F E D IR K ++E   FL
Sbjct:  133 MLAHSMGSIVGLLHAQRNPKFWDGLILGSPMLEIKTRSFPSWVVSNLFKVMKRVGMADGFVPGGTEDEQEPFENNSVTHCPHRFRLARYIEEREPCLFVADPSPNWVLEGFKGSQQALEGRHVLKMPILMFQAGKDEYVHEEAQNEFASTMVNCKKVRFRNAYHEIFQEKDSIRDKAIKEIIRFL 317          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A6H5JGE2_9PHAE (Hydrolase_4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JGE2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.190e-17
Identity = 64/192 (33.33%), Postives = 98/192 (51.04%), Query Frame = 1
Query:  211 LSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWS-RVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGLDHLV---RPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFLNS 774
            L+ +AHSMGGL+++ AA  +  LF  LV+ +PM+    G +P+ V   L  +  +LG     +P++     S   + ++T DK RL  WE +R     V   G S  W+ +++ A    R R  Q+SVPVL+LEAG+D  V   RP       R VP      +   YH++  E +  R   ++ T +FL S
Sbjct:  127 LTCLAHSMGGLLSLMAAAGDRGLFQRLVVCSPMIMMKCG-MPHFVALWLGRLFCRLGMGSSYAPVQSGVDVSRPITMKLTTDKARLATWERIRRAYPIVAMGGMSNLWVVEAIKAQNWFRARAKQVSVPVLLLEAGVDVFVCTSRP--FRELCRAVPSCRRLCYPTTYHEILFEKEWARSHAMKATITFLKS 315          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: U3A3V3_9HYPH (Putative lipase n=1 Tax=Caenibius tardaugens NBRC 16725 TaxID=1219035 RepID=U3A3V3_9HYPH)

HSP 1 Score: 88.6 bits (218), Expect = 1.710e-16
Identity = 69/203 (33.99%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSR------------VTHDKERL--RLWETLRGVVGCVLQRGP-SFAWLSKSVVASKRARGR---LHQLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHG-AYHDLFDETDDIRLKVLQETCSFL 768
            ++AHSMGG +A+ A        D LVL+APML  +   +P  V+  +AW +T+LG          P R +  WS             +THD +R    LW          L  GP S+ W+ ++  AS RA  R   L Q+++PVL+L    D LV P  IAR  R++P     LF   A H++  ETD +R + L+    FL
Sbjct:  129 LIAHSMGGHLALRAVAEHRVAPDALVLSAPMLGISASLIPVPVLHGVAWAMTRLGD---------PRRPAWRWSEKPGELPADRADLLTHDPDRYADELWWRAHRPE---LVMGPGSWGWVERAF-ASTRALARPGVLEQVTIPVLILATAKDRLVDPRAIARAVRRLPDCEELLFGPEARHEILRETDSVRDRALRAIDGFL 318          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: A0A1M5XT26_9DELT (Lysophospholipase n=1 Tax=Desulfofustis glycolicus DSM 9705 TaxID=1121409 RepID=A0A1M5XT26_9DELT)

HSP 1 Score: 87.0 bits (214), Expect = 6.400e-16
Identity = 65/190 (34.21%), Postives = 100/190 (52.63%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVG-ALAWVVTKLGRQGHRSPIRRPARASMEWSR--VTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGLDH-LVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFLNS 774
            V+AHSMGG IA+ A    P L DGL+L +PML   TG L   ++G ALA ++ + G  G         RA + ++   +T D ER    + +      +    P+F WL ++    +RAR    +L+ PVL+L AGLD  +VR   +  F R++P    + F GA H++  E D++R   + E   F++S
Sbjct:  122 VLAHSMGGAIAMLALAERPGLADGLILVSPMLQINTGCLLPPLLGEALAALICRFGGGGSYVWGGGSFRADLPFAGNDLTGDAERFARNQQMIVDRSELALGSPTFGWLRQAYRGMRRARSSHDKLNCPVLLL-AGLDDTVVRVPAMLSFSRRLPRCTVKRFAGARHEVLMEHDEVRGTAIAEILGFIDS 310          
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Match: UPI001FCFF457 (alpha/beta fold hydrolase n=1 Tax=Acuticoccus sp. I52.16.1 TaxID=2928472 RepID=UPI001FCFF457)

HSP 1 Score: 88.2 bits (217), Expect = 1.060e-15
Identity = 56/185 (30.27%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  217 VVAHSMGGLIAVNAALREPELFDGLVLAAPMLAPTTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLRLWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLH-QLSVPVLVLEAGLDHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL 768
            VVAHSMGGL+A+ AA R  +  + +VL AP+L  +   LP G++G +       G    R           E +R+T D +R +  + L      +   GP+  W+  ++ A +R + ++   L +P L + +G D +V    I RF R  PG G  L  GA H +  E D++R        +F+
Sbjct:  116 VVAHSMGGLVALTAAPRLADEVERMVLLAPVLQISQLPLPAGLIGLIGGAAALFGLDRMRVRRSPEGPTPFEENRITSDPQRYQQLQRLADANPDLAIAGPTLGWVRATIAAGRRVQRQVGLPLPIPSLFVASGRDEIVSTPVIDRFARSAPGGGAVLIPGARHQVLLERDELRDLAFAAMDAFI 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7787.19035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G484_ECTSI8.910e-15393.67Lysophospholipase l2 pldb, hydrolase of alpha/beta... [more]
A0A6H5KMI3_9PHAE4.200e-11793.19Hydrolase_4 domain-containing protein n=1 Tax=Ecto... [more]
A0A838L938_9SPHN1.360e-2134.95Alpha/beta hydrolase n=1 Tax=Sphingomonas chungang... [more]
A0A318AXB5_9NOSO2.600e-2134.95Alpha/beta hydrolase n=1 Tax=Nostoc sp. 3335mG Tax... [more]
A0A4Q8UKR6_9ALTE1.300e-1833.33Alpha/beta fold hydrolase n=1 Tax=Alteromonas sp. ... [more]
A0A2E6H695_9PROT1.710e-1831.35Hydrolase_4 domain-containing protein n=1 Tax=Halo... [more]
A0A6H5JGE2_9PHAE4.190e-1733.33Hydrolase_4 domain-containing protein n=2 Tax=Ecto... [more]
U3A3V3_9HYPH1.710e-1633.99Putative lipase n=1 Tax=Caenibius tardaugens NBRC ... [more]
A0A1M5XT26_9DELT6.400e-1634.21Lysophospholipase n=1 Tax=Desulfofustis glycolicus... [more]
UPI001FCFF4571.060e-1530.27alpha/beta fold hydrolase n=1 Tax=Acuticoccus sp. ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7787contigEcto-sp13_S_contig7787:2767..6685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue4.8e-15
Seed eggNOG ortholog1219035.NT2_05_03540
Preferred namepldB
Model size903
KEGG koko:K01048
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005623,GO:0005886,GO:0006629,GO:0008150,GO:0008152,GO:0016020,GO:0016298,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0044238,GO:0044464,GO:0052689,GO:0071704,GO:0071944
Exons5
EggNOG free text desc.Lysophospholipase
EggNOG OGs1MWDA@1224,2K0NG@204457,2TSZ4@28211,COG2267@1,COG2267@2
EC3.1.1.5
Cds size795
COG Functional cat.I
BiGG ReactioniETEC_1333.ETEC_4102,iEcHS_1320.EcHS_A4049
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7787.19035.1prot_Ecto-sp13_S_contig7787.19035.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7787 2857..6667 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.121523-UTR-Ecto-sp13_S_contig7787:2766..28561681464049.121523-UTR-Ecto-sp13_S_contig7787:2766..2856Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7787 2767..2856 -
1681464049.180975-UTR-Ecto-sp13_S_contig7787:6667..66851681464049.180975-UTR-Ecto-sp13_S_contig7787:6667..6685Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7787 6668..6685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464049.1326134-CDS-Ecto-sp13_S_contig7787:2856..29351681464049.1326134-CDS-Ecto-sp13_S_contig7787:2856..2935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7787 2857..2935 -
1681464049.1414418-CDS-Ecto-sp13_S_contig7787:3245..33911681464049.1414418-CDS-Ecto-sp13_S_contig7787:3245..3391Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7787 3246..3391 -
1681464049.1499856-CDS-Ecto-sp13_S_contig7787:5278..54711681464049.1499856-CDS-Ecto-sp13_S_contig7787:5278..5471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7787 5279..5471 -
1681464049.1584327-CDS-Ecto-sp13_S_contig7787:5844..59511681464049.1584327-CDS-Ecto-sp13_S_contig7787:5844..5951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7787 5845..5951 -
1681464049.1681771-CDS-Ecto-sp13_S_contig7787:6397..66671681464049.1681771-CDS-Ecto-sp13_S_contig7787:6397..6667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7787 6398..6667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7787.19035.1

>prot_Ecto-sp13_S_contig7787.19035.1 ID=prot_Ecto-sp13_S_contig7787.19035.1|Name=mRNA_Ecto-sp13_S_contig7787.19035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
MFSDFDHYVQDLVRFSKVILPATVRPRDASGGTRTGGQGTAGSGDPPVVA
GEPLGSDETLHALSLSVVAHSMGGLIAVNAALREPELFDGLVLAAPMLAP
TTGKLPNGVVGALAWVVTKLGRQGHRSPIRRPARASMEWSRVTHDKERLR
LWETLRGVVGCVLQRGPSFAWLSKSVVASKRARGRLHQLSVPVLVLEAGL
DHLVRPDGIARFRRKVPGAGYRLFHGAYHDLFDETDDIRLKVLQETCSFL
NSSNGRHRDSQPSS*
back to top

mRNA from alignment at Ecto-sp13_S_contig7787:2767..6685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7787.19035.1 ID=mRNA_Ecto-sp13_S_contig7787.19035.1|Name=mRNA_Ecto-sp13_S_contig7787.19035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3919bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7787:2767..6685- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGCGCACGTTCTCCACATGTTCAGCGATTTCGACCACTACGTACAGGA CCTGGTAAGATTTTCGAAGGTAATTCTCCCCGCCACTGTGCGGCCGCGCG ACGCGAGCGGTGGGACCAGAACGGGCGGCCAGGGAACGGCAGGCAGCGGA GACCCTCCCGTTGTGGCAGGCGAGCCCCTCGGCTCTGACGAAACGCTCCA CGCGCTGTCTCTGTCCGTGGTGGCACACTCGATGGGTGGGCTGATAGCGG TCAACGCCGCTCTGCGAGAGCCTGAGCTCTTCGACGGGGTGAGACAAAAA TCGCGTTTTTTTCTTGGGTCGTTGTTTCGAAGAACGTGACATCGTGCGAT TTCGAGACTCACCGGGTGTGTGATCGTGTTGCGCGCCGGTGCGTCGAATC AAAGGTGTTGCGTTTATGATCCCCCGATCCCCCCCAGAATGAAAACAAAA TCGGTATGAGGGCTATCGGGGTCTCACAGAACCGACCGAACTGCGAATAC ACCATTTCGCACAGCGACAACGTTCGTATTATGTCCTTTTTTCCGCGGTA CCATCTACCTCTTCCGTTTGGATGCGTGCTTCGTGTGTGGAACTTCCAGT GCTTGTAATATTTTCAAAACGCCGAGAAAAATTGGCACATGGCAATGGTT AAGTTCACTTTGTTCTTGTGTACCCCCCGCCTCAAACATCTTCCGCGTGT GAATGGCGTGCAAATAAACAATGTTGTCGCGAAGCTTGTTCTGGCTGCTC CCATGCTGGCGCCTACCACCGGAAAACTGCCGAATGGCGTCGTAGGAGCG CTTGCCTGGGTCGTGACAAAGCTCGGGCGACAGGGACACAGGTGAGAACG GCTTTCTTCTGCGAAAGCCATCGTAAACGACAGCAGTCTCGTCGATTCAT CATCGGATCCGCTTGGCTTCAGAGATACGTCCGCTCCTTCGGACAACCGC GTTCGGGCTTGCGTTGAGTTGGCCCACCTAGCGTTACAGCAAGCGGCGAG CAGCGGCCGCCAGCGCGGCAACCCCGGTGTAACACGATTGTCGGTAGTCG TTGGATGCCGTCGAGCACCAGGTCGGCCTAACACACCATCGTCGCCTCGC TCCTCTCCAGCTCCGCAACAGAGAAGAATCTCAAGTGTTGGGTGCATAGG CGTGAATCGTTCTCTCTTCTTGCCCCGCGCCGCGCATGCTGTCCCAAACG CGACGGGAGTGCAGGAGTCCCATCCGGCGACCCGCACGGGCAAGCATGGA ATGGTCCAGGGTGACGCACGACAAAGAACGCCTCCGTCTCTGGGAAACCC TTCGGGGCGTAGTCGGCTGCGTGCTCCAGCGGGGACCGAGCTTTGCCTGG CTGTCGAAATCCGTGGTGGCTTCGAAGCGCGCTCGGGGCCGACTCCATCA GCTATCGGTGAGCGCGGGAGGGTTGAAAGGAGAGAGGCAGGGGAACACTG TGCAAGGTCAGAGGTCGTAGCAGTTGTCGTTACCGCTCGGTCTGTGTTTT CGAAGTTTGACGAAGTTTGCGAAATTATGCGGTACTGAATTCATCGGAGA TATGGCACCAGGTTACACAAGAAAATGCAAGAACGGCATGATTTAGTTCG ATTTACGCACCGGGGTCGGTGACATCGCACCGGGTGCTCCCTCACCGACC CCTTAATCCAAGATTGAGCTCCTTTTGGGCTGCCGGAATGAGGTGCATGT GCATACCTTTTCCACGTGGGGACGGTGTCAGCGTTCCTGTCCTGTATGTA CGTATGCATGGTCGCGGTTCACGCAGGATGCCGGTTGTTTTCATTTTGTT GGTATGGAAGTTGCCAACCGTACACTCGACTGAATACACAACGTAAAAGC CGCACCCTACCGACCTTACACAACACGAAACTGTTGTACTGCTGCGTACG TACTGGTATCCGTAGAGGAAGACCGAAACGAAAGCGGAAGACAGCCTGAT ACCGTATGTACCGGTGCCTCAAATGAAAACCCCATCGTTTGTTGTCCTTG TCACGCCATAGCCAAAGGCGCCTTCGAATACAAGACCGCTCGCAGCATGG AATGTTACGTTCTAGCCAACGTTGCCGTTACCGGTTTGCTTCCAACCAGC AACAACGGTACCTACACGTTGGTTCCACTGATCAATAGCATTGTCAACTG GCTGTGCAGAAGACCGTGTGTGTGCGTGGGTTTGCCTACACTGGTATCAA TAATATGGTACCTGTCAGGGAGATGGCACCGAGGTGCGTGCATTCGTGCA TAATACAGCTGCGTGTATTTCATCATGGATGACACCGATCGGAGAGATCG CACCGGGGTGCCTGACAAGACTTAACGAATGATTTGACTGCATTTCCGCA CCGGGGTCAGAGAGATGGCACCAGGGTGCGATAAAAACAACGAGGAAGAA GCGCTAAAAAAAACGACCGCACCCGGTGCCGTCTCTCCGACTATTTACGG TACTTAGTGTCGCGGCCTAACGCGCTCACTCCTCCTTGCGTCCGCTCCGT AGTATGTTACGGGAGCCAATCGCAAAGGTCGACGCCTGCGCAGAACACAA CCGGTTGCAGAGCCCGCCAAGTCGCTTGAAAGCTGTACCCATTGGCACTT TCTCTTCGAACGACACAAAAAACGGAGAGGACAGGAAAACAAGAGAGGGT AGACCATGACCAGCACGCACTCGTCTCCAACCCCCCGCGCCGGGTTTGTC CACCGAGCGGCGTGGACTATCCACGCTCACGCCGGCCTCTGCAAACCTTA TCCCGTCCTCCAGCATCGGCTCTCACTCCCCCGACTTCAGACATGATTGT CTTTCTATCGGCCAAATTTGACATTATGCCCCCTACGTAGGGCAACGCCA ACAGCGCCTGGCTCCTTGGGGACGGTGATTTCTAGGCAGCCCATGTCGAA TGGAAGAAACCGTCAAGCTCGTGCCTTTGGTGACAACGGTTCGGCCGGTT CCTCACATAGAGAAAAGCTGCGCTGCTCTTTCGCCTTGCGCGAACATCGA AATATTGCCCAGAGGGAGCTGCACCCTGTAAGTTTCGGTCGCACCTGGGG AAGCGGGTCGTTGGGTGCGCCGTTGGCCTCACCCACAGTGCCTGTCTGCC GGTATGAAGAAACAGTGAGCATCGCTGTTGGGCCTCACGTTCACATCGAT CTTCGTCCGCGGGCGAAACTCGTGTGTTTCGATCATTTCGTCTTTTCGTT TGTCCTGTTGCTGTCTTTTTCAAAACTGCTGCGGTAATCCGTTTTCACTT TTCTTCGGTTTTGTTTATTGTGGCTTTGCGTTTTTTTCTGTTAGGTTCCC GTTCTCGTGCTAGAGGCTGGGCTGGACCACCTAGTCCGTCCAGACGGCAT CGCACGGTTCAGGAGGAAAGTTCCGGGTGCTGGGTATCGCCTGTTTCATG GGGCCTACCACGATCTCTTCGACGAAACAGATGACATCAGGCAAGCGGGA ATGTGACATTCAGGAAAGATGTTGTAAATACCTTAACAAGCGAATGTTTT TTTCGCCGATTGACCCCTGGAGCAAAGATTGTGTGAAACGATTTTTGTGA GAGGTGATGTTGGCTGCCATGGTCCCGGATGTTCGTGTTGAAAAAAAATT GCAAGCCTAGATCACGACAAGGCCTTCGATGGATTGCGATGGTGGGTGGA CACTGTTCATGGGGGCGACGGCGAGGTCCATTCTTACTTCACTCCTCCAC GCCCTTGCTCGAACCACCTCTCGCCTTTCCTCTTCTTTCTGCGCAACTAG GTTGAAGGTTTTGCAAGAAACATGTTCGTTCCTGAATTCATCGAACGGTC GACATCGTGACTCGCAGCCCTCAAGTTGAGGCTCTCGCTCACACGTGGCG GGTAGTTCGATGCCTTCGTCCTTCCGTCATCGAGTGGTCATTGAAACGTG CTTGTGTATTTATGAAACC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7787:2767..6685-

>mRNA_Ecto-sp13_S_contig7787.19035.1 ID=mRNA_Ecto-sp13_S_contig7787.19035.1|Name=mRNA_Ecto-sp13_S_contig7787.19035.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7787:2767..6685- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAGCGATTTCGACCACTACGTACAGGACCTGGTAAGATTTTCGAA
GGTAATTCTCCCCGCCACTGTGCGGCCGCGCGACGCGAGCGGTGGGACCA
GAACGGGCGGCCAGGGAACGGCAGGCAGCGGAGACCCTCCCGTTGTGGCA
GGCGAGCCCCTCGGCTCTGACGAAACGCTCCACGCGCTGTCTCTGTCCGT
GGTGGCACACTCGATGGGTGGGCTGATAGCGGTCAACGCCGCTCTGCGAG
AGCCTGAGCTCTTCGACGGGCTTGTTCTGGCTGCTCCCATGCTGGCGCCT
ACCACCGGAAAACTGCCGAATGGCGTCGTAGGAGCGCTTGCCTGGGTCGT
GACAAAGCTCGGGCGACAGGGACACAGGAGTCCCATCCGGCGACCCGCAC
GGGCAAGCATGGAATGGTCCAGGGTGACGCACGACAAAGAACGCCTCCGT
CTCTGGGAAACCCTTCGGGGCGTAGTCGGCTGCGTGCTCCAGCGGGGACC
GAGCTTTGCCTGGCTGTCGAAATCCGTGGTGGCTTCGAAGCGCGCTCGGG
GCCGACTCCATCAGCTATCGGTTCCCGTTCTCGTGCTAGAGGCTGGGCTG
GACCACCTAGTCCGTCCAGACGGCATCGCACGGTTCAGGAGGAAAGTTCC
GGGTGCTGGGTATCGCCTGTTTCATGGGGCCTACCACGATCTCTTCGACG
AAACAGATGACATCAGGTTGAAGGTTTTGCAAGAAACATGTTCGTTCCTG
AATTCATCGAACGGTCGACATCGTGACTCGCAGCCCTCAAGTTGA
back to top