mRNA_Ecto-sp13_S_contig7745.18980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7745.18980.1
Unique NamemRNA_Ecto-sp13_S_contig7745.18980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.240e-15
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATADCGTS 303
            L+  YCASP+LA SVLL  + RWNLRMM+K  GLPAALGGH N+YLVE +QR TAD  +S
Sbjct:  669 LLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDSS 728
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.250e-13
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRAT 285
            L+  YCASPALA SVLL  + RWNL+MMVK  GLPA LG H N++LVE++QRAT
Sbjct:  713 LLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQRAT 766
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5L7E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7E8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.120e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  166 VLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATADCGTSCSIPRSIRPPSTPW 345
            +LL  +L WNLRMMVK  GLPAALGGH N Y  +L+QRA          P+S RPPST +
Sbjct:    1 MLLEFNLGWNLRMMVKNRGLPAALGGHYNNYRGKLIQRAMGTGSRVAPSPQSGRPPSTQY 60
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: D7FWS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.560e-10
Identity = 29/38 (76.32%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:  202 MMVKTGGLPAALGGH*NEYLVELVQRATADCGTSCSIP 315
            M+VK  GLPAALGGH NEYLVELVQRATAD   SC +P
Sbjct:    1 MLVKNRGLPAALGGHYNEYLVELVQRATADWEASCPVP 38
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.400e-9
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATA 288
            L+  YCASPALAHSVLL  + RWN+RM VK  GLP  +G   ++Y  E++QR TA
Sbjct:   76 LLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVGEFFDQYETEIIQRDTA 130
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.780e-9
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:  118 AVLVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRAT 285
            A+L+  YCASPALAHS+LL  + RWN++M VK   LP  +GG  +++ +E++QR T
Sbjct:   82 ALLLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGGCFDQFDIEIIQRET 137
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 8.770e-9
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATA 288
            L+  YCASP+LAHSVLL  + RWN+RM VK  GLP  +G   +++ +E++QR TA
Sbjct:  349 LLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETA 403
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 9.110e-9
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATA 288
            L+  YCASP+LAHSVLL  + RWN+RM VK  GLP  +G   +++ +E++QR TA
Sbjct:  346 LLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVGEFFDQFEIEIIQRETA 400
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 2.270e-6
Identity = 27/63 (42.86%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATADCGTSCSI 312
            L+  YCASPALAHS+LL    RWN++M VK   L   +GG  +++ +E++QR T      C +
Sbjct:  368 LLSTYCASPALAHSILLEFKHRWNIKMAVKN--LSKEIGGCFDQFDIEIIQRETTSWDPDCPV 428
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.520e-6
Identity = 22/56 (39.29%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:  124 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*NEYLVELVQRATAD 291
            L+  +CASP + H+VL+  + RWN+   V+  G+ A +GG  ++Y+++ +QRATA+
Sbjct:  423 LLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAE 478
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE1.240e-1566.673'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI3.250e-1366.673'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L7E8_9PHAE7.120e-1155.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS6_ECTSI4.560e-1076.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9U3_9PHAE2.400e-956.36Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP32_9PHAE4.780e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE8.770e-952.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE9.110e-952.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM2_9PHAE2.270e-642.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K811_9PHAE8.520e-639.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7745contigEcto-sp13_S_contig7745:4696..6184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size359
Hectar predicted targeting categoryother localisation
Exons3
Cds size249
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464044.5545967-CDS-Ecto-sp13_S_contig7745:4695..48051681464044.5545967-CDS-Ecto-sp13_S_contig7745:4695..4805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7745 4696..4805 +
1681464044.564239-CDS-Ecto-sp13_S_contig7745:5267..52911681464044.564239-CDS-Ecto-sp13_S_contig7745:5267..5291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7745 5268..5291 +
1681464044.5735946-CDS-Ecto-sp13_S_contig7745:5959..60741681464044.5735946-CDS-Ecto-sp13_S_contig7745:5959..6074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7745 5960..6074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464044.582863-UTR-Ecto-sp13_S_contig7745:6074..61841681464044.582863-UTR-Ecto-sp13_S_contig7745:6074..6184Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7745 6075..6184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7745.18980.1prot_Ecto-sp13_S_contig7745.18980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7745 4696..6074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7745.18980.1

>prot_Ecto-sp13_S_contig7745.18980.1 ID=prot_Ecto-sp13_S_contig7745.18980.1|Name=mRNA_Ecto-sp13_S_contig7745.18980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
LGKHNDCLPHHSSEHGWPSRLQQAVQVQREPRTRSGSSPAVLVLYYCASP
ALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*
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mRNA from alignment at Ecto-sp13_S_contig7745:4696..6184+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7745.18980.1 ID=mRNA_Ecto-sp13_S_contig7745.18980.1|Name=mRNA_Ecto-sp13_S_contig7745.18980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7745:4696..6184+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGGAAGCACAACGATTGCCTTCCCCACCACAGCAGTGAACATGGATG
GCCTTCCCGACTACAGCAAGCAGTACAGGTGCAGAGAGAGCCACGGACGA
GGTCAGGTAGGTGATGGGATTGATTGTATGCACTGTGCTGTCAACAAGCA
GCAGCTTGTTTCCGTGAACACAGGCCTGGATACGCTTGTGGATACATCTG
CTGTGTCTGTTACCTTTAGGCTACGGTAAGGCTACAGCAGTAGACAAAAG
GTGGCTACCGAGAAGGACGGTAGAGGGCCCTGGTAACGCGACAGTCTGTG
CCTGACGAATAGACAGGCAGGCGCTATTGTTCAGAGGGACCGGCGCTATT
CAAAGTGTACTGTAGTCTATCTACTTGTATGTTGTGATCAGTCTGTGCCC
AGCAAATCTCGCGCTACCGCAGTACACAGGGCCGCCGGCGTTATTCAACC
GGCGCTGAGAGCCCACTACTGTAGTAGTGTGGCATCTTGTCAAGCATGAT
TTGGAGGTTCTGAAGGCACGGGCGGTACAGGGTGTAGTCTATGTGGCAGT
ATGAGTGTCTTTACGTCAAGAGCAGTCCTGCCGTACTAGTGCTGTAGTCT
GACGGGTACATAGTCTAGTCTACGCTTCATCTTGCGGTACTTTGTAGCGA
TACCGCCCTTGCCCGACACATCGCCTGCGACATCTGGATGCTTTCTGGGG
CCCGTGATTTGGAATTTTTCGTGATCCCGTTTGTGTTGATGTTCCTTGGT
CCCTCTATTTGTCTCTTTGTACTGAAGGGCAAAATGCATCCTTGTAGACG
GCTGCTGGCCTATGCCCGCGGAGGGCATCCCCGTCAGTTGCACCAGCATG
GATACTGTATTTACTATTGAAGGCTTTTTATTCACGGCAAAACTCCGCAC
GCTGTTGAATTTTAGAGTTATGGGTGTGTTGTCTTCGTTTGCGAAGGTGT
GCGTAGAGGTAGTAGTATACAGGTCAACGCCTTGCATGCTGGTGGAGACC
AACCCCGACCACTGCTCTGTGCGACAAGTGGGACCGGATGTATGTCGCCC
AAAAAACTTCCAAGAGATGTGGCGTGCTTCGTTTGTGAATGCTGGGCGCC
CTTTAAGTTGTTGCCAAATTCAATTTAAGTCAACATCGCTTGCTTCAGCC
CCTTTTGGTTCTTCTGCAAAGAAAGGCTGCCACCCCTCTTGTCGCGTCCC
AACCGCTGTTTGTTCTCTTGGTACAACAGGGTTTTCGCCGATACTTGCAC
GCCCTGTTGGCCAGCTACTGCGCATCGCCAGCTCTAGCGCACTCGGTATT
GCTGGGAATCAGCCTCCGGTGGAACTTGAGGATGATGGTCAAGACCGGTG
GGTTGCCCGCGGCGCTGGGAGGGCACTAAAACGAATACCTTGTGGAACTG
GTCCAGCGGGCCACTGCGGACTGCGGGACGAGTTGCTCCATCCCCCGCAG
TATCCGGCCGCCATCGACCCCGTGGGCACGGGGGAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7745:4696..6184+

>mRNA_Ecto-sp13_S_contig7745.18980.1 ID=mRNA_Ecto-sp13_S_contig7745.18980.1|Name=mRNA_Ecto-sp13_S_contig7745.18980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7745:4696..6184+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGGGAAGCACAACGATTGCCTTCCCCACCACAGCAGTGAACATGGATG
GCCTTCCCGACTACAGCAAGCAGTACAGGTGCAGAGAGAGCCACGGACGA
GGTCAGGTAGCAGTCCTGCCGTACTAGTGCTGTACTACTGCGCATCGCCA
GCTCTAGCGCACTCGGTATTGCTGGGAATCAGCCTCCGGTGGAACTTGAG
GATGATGGTCAAGACCGGTGGGTTGCCCGCGGCGCTGGGAGGGCACTAA
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