prot_Ecto-sp13_S_contig7745.18980.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig7745.18980.1
Unique Nameprot_Ecto-sp13_S_contig7745.18980.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length83
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 7.180e-10
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 0 
Query:   42 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH 82
            L+  YCASP+LA SVLL  + RWNLRMM+K  GLPAALGGH
Sbjct:  669 LLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGH 709
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.210e-8
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:   42 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGGH 82
            L+  YCASPALA SVLL  + RWNL+MMVK  GLPA LG H
Sbjct:  713 LLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEH 753
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BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5KP32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP32_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.040e-6
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 0 
Query:   40 AVLVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALGG 81
            A+L+  YCASPALAHS+LL  + RWN++M VK   LP  +GG
Sbjct:   82 ALLLSTYCASPALAHSILLEFNHRWNIKMAVKNRNLPKEIGG 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5K9U3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9U3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.680e-6
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:   42 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALG 80
            L+  YCASPALAHSVLL  + RWN+RM VK  GLP  +G
Sbjct:   76 LLSSYCASPALAHSVLLEFNFRWNVRMAVKNRGLPREVG 114
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5JPK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 5.970e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:   42 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALG 80
            L+  YCASP+LAHSVLL  + RWN+RM VK  GLP  +G
Sbjct:  349 LLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVG 387
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Match: A0A6H5KLP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLP1_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.090e-6
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 0 
Query:   42 LVLYYCASPALAHSVLLGISLRWNLRMMVKTGGLPAALG 80
            L+  YCASP+LAHSVLL  + RWN+RM VK  GLP  +G
Sbjct:  346 LLSTYCASPSLAHSVLLEFNYRWNVRMAVKNRGLPREVG 384
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7745.18980.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRJ6_9PHAE7.180e-1070.733'-5' exonuclease domain-containing protein n=1 Ta... [more]
D7G3Q9_ECTSI2.210e-868.293'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KP32_9PHAE1.040e-657.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9U3_9PHAE1.680e-664.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPK9_9PHAE5.970e-661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLP1_9PHAE6.090e-661.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 43..62
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..42
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 63..82
NoneNo IPR availableTMHMMTMhelixcoord: 40..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7745contigEcto-sp13_S_contig7745:4696..6074 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7745.18980.1mRNA_Ecto-sp13_S_contig7745.18980.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig7745 4696..6184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig7745.18980.1 ID=prot_Ecto-sp13_S_contig7745.18980.1|Name=mRNA_Ecto-sp13_S_contig7745.18980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
LGKHNDCLPHHSSEHGWPSRLQQAVQVQREPRTRSGSSPAVLVLYYCASP
ALAHSVLLGISLRWNLRMMVKTGGLPAALGGH*
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